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revision 1.21, Mon Nov 16 20:05:41 2009 UTC revision 1.22, Mon Dec 7 21:11:52 2009 UTC
# Line 95  Line 95 
95      return $self->run_query('families_containing_peg', @ids);      return $self->run_query('families_containing_peg', @ids);
96  }  }
97    
 =head3 function_of  
   
     my $document = $ffObject->function_of(@ids);  
   
 Return the current functional assignment for each specified feature.  
   
 =over 4  
   
 =item ids  
   
 A list of FIG feature IDs.  
   
 =item RETURN  
   
 Returns a list of 2-tuples, each consisting of an incoming feature ID  
 followed by the feature's functional assignment, or an undefined value  
 if the feature is not found in the FIGfam database.  
   
 =back  
   
 =cut  
   
 sub function_of  
 {  
     my($self, @ids) = @_;  
     return $self->run_query('function_of', @ids);  
 }  
   
 =head3 org_of  
   
     my $document = $ffObject->org_of(@ids);  
   
 Return the name of the genome containing each specified feature.  
   
 =over 4  
   
 =item ids  
   
 A list of FIG feature IDs.  
   
 =item RETURN  
   
 Returns a list of 2-tuples, each consisting of an incoming feature ID  
 followed by the name of the genome containing the feature, or an undefined value  
 if the feature is not found in the FIGfam database.  
   
 =back  
   
 =cut  
   
 sub org_of  
 {  
     my($self, @ids) = @_;  
     return $self->run_query('org_of', @ids);  
 }  
   
 =head3 seq_of  
   
     my $document = $ffObject->seq_of(@ids);  
   
 Return the protein sequence for each specified feature.  
   
 =over 4  
   
 =item ids  
   
 A list of FIG feature IDs.  
   
 =item RETURN  
   
 Returns a list of 2-tuples, each consisting of an incoming feature ID  
 followed by the protein sequence for the feature, or an undefined value  
 if the feature is not found in the FIGfam database.  
   
 =back  
   
 =cut  
   
 sub seq_of  
 {  
     my($self, @ids) = @_;  
     return $self->run_query('seq_of', @ids);  
 }  
   
 =head3 aliases_of  
   
     my $document = $ffObject->aliases_of(@ids);  
   
 Return the aliases for each specified feature.  
   
 =over 4  
   
 =item ids  
   
 A list of FIG feature IDs.  
   
 =item RETURN  
   
 Returns a list of 2-tuples, each consisting of an incoming feature ID  
 followed by a comma-delimited list of the aliases for the feature, or an  
 undefined value if the feature is not found in the FIGfam database.  
   
 =back  
   
 =cut  
   
 sub aliases_of  
 {  
     my($self, @ids) = @_;  
     return $self->run_query('aliases_of', @ids);  
 }  
   
98  =head3 families_implementing_role  =head3 families_implementing_role
99    
100      my $document = $ffObject->families_implementing_role(@roles);      my $document = $ffObject->families_implementing_role(@roles);

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