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revision 1.20, Thu Oct 29 18:26:59 2009 UTC revision 1.21, Mon Nov 16 20:05:41 2009 UTC
# Line 319  Line 319 
319      return $self->run_query('get_subsystem_based_figfams');      return $self->run_query('get_subsystem_based_figfams');
320  }  }
321    
322  =head3 should_be_member  ##=head3 should_be_member
323    ##
324      my $document = $ffObject->should_be_member(@id_seq_pairs);  ##    my $document = $ffObject->should_be_member(@id_seq_pairs);
325    ##
326  Determine whether a particular protein sequence belongs in a particular  ##Determine whether a particular protein sequence belongs in a particular
327  FIGfam. This method takes as input multiple FIGfam/sequence pairs and  ##FIGfam. This method takes as input multiple FIGfam/sequence pairs and
328  performs a determination for each.  ##performs a determination for each.
329    ##
330  =over 4  ##=over 4
331    ##
332  =item id_seq_pairs  ##=item id_seq_pairs
333    ##
334  A list of 2-tuples, each consisting of a FIGfam ID followed  ##A list of 2-tuples, each consisting of a FIGfam ID followed
335  by a protein sequence string.  ##by a protein sequence string.
336    ##
337  =item RETURN  ##=item RETURN
338    ##
339  Returns a reference to a list of boolean flags, one per input pair. For each  ##Returns a reference to a list of boolean flags, one per input pair. For each
340  input pair, the flag will be C<1> if the sequence should be in the FIGfam and  ##input pair, the flag will be C<1> if the sequence should be in the FIGfam and
341  C<0> otherwise.  ##C<0> otherwise.
342    ##
343  =back  ##=back
344    ##
345  =cut  ##=cut
346    ##
347  sub should_be_member  ##sub should_be_member
348  {  ##{
349      my($self, @id_seq_pairs) = @_;  ##    my($self, @id_seq_pairs) = @_;
350      return $self->run_query('should_be_member', @id_seq_pairs);  ##    return $self->run_query('should_be_member', @id_seq_pairs);
351  }  ##}
352    
353  =head3 all_families  =head3 all_families
354    

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