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Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 26 15:14:15 2009 UTC (10 years, 1 month ago) by parrello
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928
Changes since 1.20: +13 -7 lines
Diff to previous 1.20
Fixed a bug in "co_occurrence_evidence".

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 26 03:46:11 2009 UTC (10 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.19: +1 -1 lines
Diff to previous 1.19
remove space that Bruce noticed

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 27 19:42:21 2009 UTC (10 years, 3 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2009_0925
Changes since 1.18: +76 -84 lines
Diff to previous 1.18
Converted co-occurrence server to new technology.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 20 19:38:17 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.17: +1 -1 lines
Diff to previous 1.17
peg1:peg2 for homologs causes graceful do nothing

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 19 17:01:06 2009 UTC (10 years, 3 months ago) by parrello
Branch: MAIN
Changes since 1.16: +73 -38 lines
Diff to previous 1.16
Added some documentation, changed warnings to trace messages for FCupdate.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Aug 16 02:11:46 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.15: +42 -42 lines
Diff to previous 1.15
removed duplicate co_occurrence_evidence

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 11 20:28:01 2009 UTC (10 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.14: +80 -0 lines
Diff to previous 1.14
add co-occurs stuff

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 8 21:24:38 2009 UTC (10 years, 7 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2009_05_18, rast_rel_2009_07_09
Changes since 1.13: +6 -4 lines
Diff to previous 1.13
updates to co_occurrence rtns

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 7 20:24:26 2009 UTC (10 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.12: +2 -2 lines
Diff to previous 1.12
add parameter to co_occurs

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 7 16:35:27 2009 UTC (10 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +30 -0 lines
Diff to previous 1.11
add co-occurrence of FIGfams

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 6 22:31:12 2009 UTC (10 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +6 -5 lines
Diff to previous 1.10
return score with clusters

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 6 22:24:50 2009 UTC (10 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +1 -1 lines
Diff to previous 1.9
change blast cutoff

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 6 20:42:35 2009 UTC (10 years, 7 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +35 -0 lines
Diff to previous 1.8
add clustering stuff

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 14 10:54:43 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2009_03_26
Changes since 1.7: +130 -36 lines
Diff to previous 1.7
basically debugged

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 11 02:02:49 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +42 -15 lines
Diff to previous 1.6
version going to Bruce

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 10 23:57:14 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +2 -2 lines
Diff to previous 1.5
minor fixes

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 10 03:35:23 2009 UTC (10 years, 9 months ago) by parrello
Branch: MAIN
Changes since 1.4: +31 -9 lines
Diff to previous 1.4
Completed update methods.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 9 14:42:27 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +12 -0 lines
Diff to previous 1.3
define some primitives that Bruce will fill in

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 8 18:38:39 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +249 -2 lines
Diff to previous 1.2
not completely debugged co-occurrence code

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 7 14:22:18 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +25 -2 lines
Diff to previous 1.1
updates relating to functional coupling and evidence

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 7 00:10:41 2009 UTC (10 years, 9 months ago) by overbeek
Branch: MAIN
code to compute estimates of functional coupling

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