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revision 1.7, Thu Jan 26 03:36:47 2006 UTC revision 1.8, Wed Feb 15 22:12:26 2006 UTC
# Line 51  Line 51 
51  external        sp      4  external        sp      4
52  external        uni     1.3  external        uni     1.3
53  external        kegg    1  external        kegg    1
54  subsystems      trusted 8  subsystems      trusted 20
 2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone_and_other_bacterial_morphogens      master:OlgaV  
55  ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1) master:MattC  ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1) master:MattC
56  ABC_transporter_arabinose_(TC_3.A.1.2.2)        master:MattC  ABC_transporter_arabinose_(TC_3.A.1.2.2)        master:MattC
57  ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)        master:MattC  ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)        master:MattC
# Line 66  Line 65 
65  ABC_transporter_heme_(TC3.A.1.107.1)    master:MattC  ABC_transporter_heme_(TC3.A.1.107.1)    master:MattC
66  ABC_transporter_histidine_lysine_arginine_ornithine_(TC_3.A.1.3.1)      master:MattC  ABC_transporter_histidine_lysine_arginine_ornithine_(TC_3.A.1.3.1)      master:MattC
67  ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1)     master:MattC  ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1)     master:MattC
68    ABC_transporter_Iron_(II)_and_Manganese master:JenZ
69  ABC_transporter_L-proline_glycine_betaine_(TC_3.A.1.12.1)       master:MattC  ABC_transporter_L-proline_glycine_betaine_(TC_3.A.1.12.1)       master:MattC
70  ABC_transporter_macrolide       master:MattC  ABC_transporter_macrolide       master:MattC
71  ABC_transporter_maltose master:MattC  ABC_transporter_maltose master:MattC
# Line 79  Line 79 
79  ABC_transporter_ribose_(TC_3.A.1.2.1)   master:MattC  ABC_transporter_ribose_(TC_3.A.1.2.1)   master:MattC
80  ABC_transporter_tungstate_(TC_3.A.1.6.2)        master:gjo  ABC_transporter_tungstate_(TC_3.A.1.6.2)        master:gjo
81  Accessory_Gene_Regulator        master:jcassat  Accessory_Gene_Regulator        master:jcassat
82  Acetogenesis_from_Pyruvate      master:LienC_UCSD  Adhesion_of_Campylobacter       master:OlgaZ
83    Aerobactin_siderophore_biosynthesis     master:JenZ
84  Alanine_Biosynthesis    master:Straw  Alanine_Biosynthesis    master:Straw
 Alkaloid_biosynthesis_from_L-lysine     master:OlgaV  
 Alkaloid_biosynthesis_from_putrescine   master:OlgaV  
 Alkaloid_biosynthesis_from_tyrosine     master:OlgaV  
85  Alkanesulfonate_assimilation    master:OlgaV  Alkanesulfonate_assimilation    master:OlgaV
86  Alkanesulfonates_Utilization    master:RobE  Alkanesulfonates_Utilization    master:RobE
87  Allantoin_degradation   master:MattC  Allantoin_degradation   master:MattC
88  Ammonia_assimilation    master:EdF  Ammonia_assimilation    master:EdF
 Anaerobic_benzoate_metabolism   master:MatthewH_UFL  
89  Anaerobic_respiratory_reductases        master:OlgaV  Anaerobic_respiratory_reductases        master:OlgaV
 Anthocyanin_biosynthesis        master:OlgaV  
90  Anthracycline_biosynthesis      master:OlgaV  Anthracycline_biosynthesis      master:OlgaV
91  Apigenin_derivatives    master:OlgaV  Archease        master:gjo
92  Archaeal_Flagellum      master:RickS  Arginine_Biosynthesis   master:RickS
 Arginine_Biosynthesis   RickS  
93  Arginine_Putrescine_and_4-aminobutyrate_degradation     master:MattC  Arginine_Putrescine_and_4-aminobutyrate_degradation     master:MattC
94  Aromatic_Amin_Catabolism        master:OlgaV  Aromatic_Amin_Catabolism        master:OlgaV
95  Aromatic_amino_acid_degradation master:OlgaV  Aromatic_amino_acid_degradation master:OlgaV
96    Arsenic_resistance      master:JenZ
97  Asp-Glu-tRNA(Asn-Gln)_transamidation    master:gjo  Asp-Glu-tRNA(Asn-Gln)_transamidation    master:gjo
 Auxin_biosynthesis      master:OlgaV  
 Auxin_degradation       master:OlgaV  
 Bacterial_Apoptosis     master:KaitlynH  
98  Bacterial_Cell_Division master:RickS  Bacterial_Cell_Division master:RickS
99  Bacterial_Chemotaxis    master:RickS  Bacterial_Chemotaxis    master:RickS
100  Bacterial_motility:Gliding      master:OlgaV  Bacteriocin-like_peptides_Blp   master:RamyA
 Benzoate_catabolism     master:changhaobi-ufl  
101  Benzoate_degradation    master:OlgaV  Benzoate_degradation    master:OlgaV
102  Betaine_biosynthesis    master:MattC  Betaine_biosynthesis    master:MattC
103  Biflavanoid_biosynthesis        master:OlgaV  Biogenesis_of_c-type_cytochromes        master:SvetaG
104  Bilin_Biosynthesis      master:OlgaZ  Biogenesis_of_cbb3-type_cytochrome_c_oxidases   master:SvetaG
105  Biotin_biosynthesis     master:rodionov  Biotin_biosynthesis     master:rodionov
106  Biphenyl_Degradation    master:OlgaV  Biphenyl_Degradation    master:OlgaV
 Bis-_and_Tris-Indole_alkaloids  master:OlgaV  
107  Branched-Chain_Amino_Acid_Biosynthesis  master:RossO  Branched-Chain_Amino_Acid_Biosynthesis  master:RossO
108  Bsub-Spore-Coat master:RickS  Butanol_Biosynthesis    master:RickS
109  Butyrate_and_Butanol_Acetone_fermentation       master:SouravB_UCSD  Campylobacter_Iron_Metabolism   master:OlgaZ
 Caffeic_acid_derivatives        master:OlgaV  
 Calvin-Benson_cycle     master:SvetaG  
 Cannabinoid_biosynthesis        master:OlgaV  
110  Capsular_heptose_biosynthesis   master:OlgaZ  Capsular_heptose_biosynthesis   master:OlgaZ
111  Capsular_polysaccharide_biosynthesis_in_Staphylococcus  master:JenZ  Capsular_polysaccharide_biosynthesis_in_Staphylococcus  master:JenZ
112    Capsular_Polysaccharide_Biosynthesis_in_Vibrio  master:JenZ
113  Capsular_surface_virulence_antigen_loci master:JenZ  Capsular_surface_virulence_antigen_loci master:JenZ
114  Carbon_monoxide_dehydrogenases  master:rodionov  Carbon_monoxide_dehydrogenases  master:rodionov
 Carboxysome     master:MalgorzataG_UFL  
115  carnitine_metabolism    master:MattC  carnitine_metabolism    master:MattC
 Carotenoids     master:OlgaV  
116  Catechol_branch_of_beta-ketoadipate_pathway     master:OlgaV  Catechol_branch_of_beta-ketoadipate_pathway     master:OlgaV
117  CbiQO-type_ABC_transporter_systems      master:rodionov  CbiQO-type_ABC_transporter_systems      master:rodionov
118  Central_meta-cleavage_pathway_of_aromatic_compound_degradation  master:OlgaV  Central_meta-cleavage_pathway_of_aromatic_compound_degradation  master:OlgaV
119  Chloroaromatic_degradation_pathway      master:OlgaV  Chloroaromatic_degradation_pathway      master:OlgaV
 Chlorophyll_Biosynthesis        master:VeronikaV  
 Chlorophyll_Degradation master:SvetaG  
120  Cholera_toxin   master:VeronikaV  Cholera_toxin   master:VeronikaV
121  Choline_Transport       master:RobE  Choline_Transport       master:RobE
122  Chorismate_Synthesis    master:VeronikaV  Chorismate_Synthesis    master:VeronikaV
 Citrate_Metabolism,_Transport,_and_Regulation   master:JenZ  
123  Clavulanic_acid_biosynthesis    master:OlgaV  Clavulanic_acid_biosynthesis    master:OlgaV
124  CMP-N-acetylneuraminate_Biosynthesis    master:OlgaZ  CMP-N-acetylneuraminate_Biosynthesis    master:OlgaZ
125    Coagulation_cascade     master:rodionov
126  Cobalamin_synthesis     master:gjo  Cobalamin_synthesis     master:gjo
127    CobW    master:vcrecy
128  Coenzyme_A_Biosynthesis master:AndreiO  Coenzyme_A_Biosynthesis master:AndreiO
 Coenzyme_A_Biosynthesis_in_Pathogens    master:AndreiO  
129  Coenzyme_F420-H2_dehydrogenase_(methanophenazine)       master:gjo  Coenzyme_F420-H2_dehydrogenase_(methanophenazine)       master:gjo
130  Coenzyme_F420_hydrogenase       master:gjo  Coenzyme_F420_hydrogenase       master:gjo
131  Coenzyme_F420_synthesis master:gjo  Coenzyme_F420_synthesis master:gjo
 coenzyme_M_biosynthesis master:AdamF  
132  Coenzyme_PQQ_synthesis  master:gjo  Coenzyme_PQQ_synthesis  master:gjo
133  Colanic_acid_biosynthesis       master:JenZ  Colanic_acid_biosynthesis       master:JenZ
134  Coumarin_biosynthesis   master:OlgaV  Cyanate_hydrolysis      master:gjo
135  Cyanobacterial_Circadian_Clock  master:OlgaZ  Cyanobacterial_Circadian_Clock  master:OlgaZ
136  Cyanobacterial_CO2_uptake       master:OlgaV  Cytochrome_B6-F_complex master:SvetaG
 Cyanophycin_metabolism  master:MikeR  
 cysteine_biosynthesis   master:RobE  
 Cytochrome_B6-F_complex master:Sveta  
 Cytochrome_oxidase_assembly_factors     master:SvetaG  
137  Cytolethal_distending_toxin_of_Campylobacter_jejuni     master:OlgaZ  Cytolethal_distending_toxin_of_Campylobacter_jejuni     master:OlgaZ
138  Cytoskeleton    master:JenZ  Cytolysin_and_Lipase_operon_in_Vibrio   master:JenZ
 Cytotoxic_Polyacetylenes        master:OlgaV  
139  D-alanyl_lipoteichoic_acid_Biosynthesis master:OlgaZ  D-alanyl_lipoteichoic_acid_Biosynthesis master:OlgaZ
140  D-arabinose_degradation master:MattC  D-arabinose_degradation master:MattC
141  D-galactarate_degradation       master:MattC  D-galactarate_degradation       master:MattC
142  D-galacturonate_degradation     master:MattC  D-galacturonate_degradation     master:MattC
 D-glucarate_degradation master:MattC  
143  D-tyrosyl-tRNA(Tyr)_deacylase   master:gjo  D-tyrosyl-tRNA(Tyr)_deacylase   master:gjo
144  De_Novo_Purine_Biosynthesis     master:RossO  De_Novo_Purine_Biosynthesis     master:RossO
145  De_Novo_Pyrimidine_Synthesis    master:RossO  De_Novo_Pyrimidine_Synthesis    master:RossO
 Dehydrogenase_complexes master:VeronikaV  
146  Denitrification master:rodionov  Denitrification master:rodionov
147  Differentiation_in_bacteria:transcription_factors_and_signaling_systems master:OlgaV  Di-Inositol-Phosphate_biosynthesis      master:rodionov
148  DNA-replication master:RickS  DNA-replication master:RickS
149  DNA_repair,_bacterial   master:gjo  DNA_repair,_bacterial   master:gjo
150  DNA_repair_and_recombination_eukaryotic master:gjo  DNA_repair_and_recombination_eukaryotic master:gjo
151  DNA_Repair_Base_Excision        master:MikeK  DNA_replication,_archaeal       master:gjo
152    DNA_structural_proteins,_bacterial      master:gjo
153    DNA_topoisomerases      master:gjo
154    DNA_topoisomerases,_Type_I,_ATP-independent     master:gjo
155    DNA_topoisomerases,_Type_II,_ATP-dependent      master:gjo
156  dTDP-rhamnose_synthesis master:MikeK  dTDP-rhamnose_synthesis master:MikeK
157  Embden-Meyerhof_and_Gluconeogenesis     master:SvetaG  Embden-Meyerhof_and_Gluconeogenesis     master:SvetaG
158  Embden-Meyerhof_and_Gluconeogenesis_Archaeal    master:SvetaG  Energy-conserving_hydrogenase_(ferredoxin)      master:gjo
159  Entner-Doudoroff_Pathway        master:SvetaG  Entner-Doudoroff_Pathway        master:SvetaG
160    ESAT-6_proteins_secretion_system_in_Actinobacteria      master:SvetaG
161    ESAT-6_proteins_secretion_system_in_Firmicutes  master:SvetaG
162  Ethanolamine_utilization        master:gjo  Ethanolamine_utilization        master:gjo
163  F0F1-type_ATP_synthase  master:RickS  F0F1-type_ATP_synthase  master:RickS
164  Fatty_Acid_Biosynthesis_FASII   master:AndreiO  Fatty_Acid_Biosynthesis_FASII   master:AndreiO
 fatty_acid_metabolism   master:MattC  
 fatty_acid_oxidation_pathway    master:MattC  
165  Fe-S_cluster_assembly   master:rodionov  Fe-S_cluster_assembly   master:rodionov
166  Fermentations:_Lactate  master:SvetaG  Fermentations:_Lactate  master:SvetaG
167  Fermentations:_Mixed_acid       master:SvetaG  Fermentations:_Mixed_acid       master:SvetaG
168  Flagellum       master:RickS  Flagellum       master:RickS
169  Flavanone_biosynthesis  master:OlgaV  Flagellum_in_Campylobacter      master:JenZ
170  FMN_and_FAD_biosynthesis        master:AndreiO  FMN_and_FAD_biosynthesis        master:AndreiO
 FMN_and_FAD_biosynthesis_in_pathogens   master:AndreiO  
171  Folate_Biosynthesis     master:vcrecy  Folate_Biosynthesis     master:vcrecy
172    Formaldehyde_assimilation:_Ribulose_monophosphate_pathway       master:SvetaG
173  Formate_dehydrogenase   master:gjo  Formate_dehydrogenase   master:gjo
174  Formate_hydrogenase     master:OlgaV  Formate_hydrogenase     master:OlgaV
 Fructose-bisphosphate_aldolase_protein_family   master:SvetaG  
 Fucose_and_rhamnose_degradation master:MattC  
 Fungal_cytostatics      master:OlgaV  
 Fungal_differentiation_factors  master:OlgaV  
 Galactitol_degradation  master:MattC  
 Galactose_degradation   master:MattC  
 General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)      master:MattC  
 Glutamate,_aspartate_and_asparagine_biosynthesis        master:MattC  
 Glutamate_biosynthesis  master:MattC  
 Glutamyl_peptidase?     master:RamyA  
 Glutathione_Redox_Metabolism    master:Neema_UCSD  
175  Glycerol_fermenation_to_1,3-propanediol master:gjo  Glycerol_fermenation_to_1,3-propanediol master:gjo
 Glycerol_Metabolism     master:MattC  
176  Glycerolipid_and_glycerphospholipid_metabolism  master:VasiliyP_UCSD  Glycerolipid_and_glycerphospholipid_metabolism  master:VasiliyP_UCSD
 Glycine_cleavage_system master:MattC  
177  Glycine_reductase,_sarcosine_reductase_and_betaine_reductase    master:gjo  Glycine_reductase,_sarcosine_reductase_and_betaine_reductase    master:gjo
178  Glycine_synthesis       master:MikeK  Glycine_synthesis       master:MikeK
 glyoxylate_degradation  master:MattC  
179  Glyoxylate_Synthesis    master:RickS  Glyoxylate_Synthesis    master:RickS
 Gram-Positive_Extracellular_Nucleases   master:RamyA  
 gram_plus_late_competence       master:alexS  
180  GroEL_GroES     master:MikeK  GroEL_GroES     master:MikeK
 Heavy_metal_ion_sensors_and_exporters   master:JenZ  
181  Heme-bound_Iron_Scavenge_Pathway        master:RickS  Heme-bound_Iron_Scavenge_Pathway        master:RickS
182  Hexitol_degradation     master:MattC  Hfl_operon      master:gjo
183  Histidine_Biosynthesis  master:RossO  Histidine_Biosynthesis  master:RossO
184  Histidine_Degradation   master:RossO  Histidine_Degradation   master:RossO
185  HMG_CoA_Synthesis       master:VeronikaV  HMG_CoA_Synthesis       master:VeronikaV
186  Homogentisate_pathway_of_aromatic_compound_degradation  master:OlgaV  Homogentisate_pathway_of_aromatic_compound_degradation  master:OlgaV
187  hpa_catabolic_pathway   master:YakovK  Hydantoin_metabolism    master:OlgaV
188  Hydrogenases    master:OlgaV  Hydrogenases    master:OlgaV
189  Inorganic_Sulfur_Assimilation   master:ChristianR  Hyperosmotic_ectoine_biosynthesis       master:JenZ
190  Inositol_catabolism     master:VeronikaV  Inositol_catabolism     master:VeronikaV
191  Intercellular_adhesion_SA       master:MattC  Inteins master:gjo
 Isoleucine_degradation  master:OlgaZ  
192  Isoprenoid_Biosynthesis master:OlgaZ  Isoprenoid_Biosynthesis master:OlgaZ
193  KDO2-Lipid_A_biosynthesis       master:OlgaZ  KDO2-Lipid_A_biosynthesis       master:OlgaZ
194  Ketogluconate_metabolism        master:MattC  L-ascorbate_utilization_(and_related_gene_clusters)     master:SvetaG
195  L-ascorbate_degradation master:MattC  Lactate_utilization     master:rodionov
196  Lactose_degradation     master:MattC  Lactose_utilization     master:gjo
 Leucine_Biosynthesis_v2 master:AdamF  
197  Leucine_Degradation_and_HMG-CoA_Metabolism      master:VeronikaV  Leucine_Degradation_and_HMG-CoA_Metabolism      master:VeronikaV
 Lignine_biosynthesis    master:OlgaV  
 linker_unit-arabinogalactan_synthesis   master:NJ  
 Lipid_A_biosynthesis    master:OlgaZ  
 Lipid_A_modifications   master:OlgaZ  
198  Lipoic_acid_metabolism  master:gjo  Lipoic_acid_metabolism  master:gjo
199  Lipoteichoic_acid_biosynthesis  master:RamyA  Lipopolysaccharide_biosynthesis_2       master:OlgaV
200  Listeria_Pathogenicity_Island_LIPI-1_extended   master:SvetaG  Listeria_Pathogenicity_Island_LIPI-1_extended   master:SvetaG
201  Listeria_surface_proteins:_Internalin-like_proteins     master:SvetaG  Listeria_surface_proteins:_Internalin-like_proteins     master:SvetaG
202  Listeria_surface_proteins:_LPXTG_motif  master:SvetaG  Listeria_surface_proteins:_LPXTG_motif  master:SvetaG
# Line 249  Line 207 
207  Malonate_decarboxylase  master:VeronikaV  Malonate_decarboxylase  master:VeronikaV
208  Mannose-sensitive_hemagglutinin_type_4_pilus    master:RobE  Mannose-sensitive_hemagglutinin_type_4_pilus    master:RobE
209  Mannose_and_fructose_metabolism master:HanYuC_UCSD  Mannose_and_fructose_metabolism master:HanYuC_UCSD
 mannose_and_GDP-mannose_metabolism      master:MattC  
210  Membrane-bound_Ni,_Fe-hydrogenase       master:rodionov  Membrane-bound_Ni,_Fe-hydrogenase       master:rodionov
 Menaquinone_and_Phylloquinone_Biosynthesis      master:OlgaZ  
 Menaquinone_Biosynthesis        master:RickS  
211  Mercury_resistance_operon       master:JenZ  Mercury_resistance_operon       master:JenZ
 Methane_metabolism      master:MikeR  
212  Methanogenesis  master:gjo  Methanogenesis  master:gjo
213  Methanogenesis_from_methylated_compounds        master:gjo  Methanogenesis_from_methylated_compounds        master:gjo
214  Methanophenazine_hydrogenase    master:gjo  Methanophenazine_hydrogenase    master:gjo
215  methanopterin_biosynthesis      master:AdamF  Methicillin_resistance_in_Staphylococci master:SvetaG
216  Methionine_Biosynthesis master:rodionov  Methionine_Biosynthesis master:rodionov
217  Methionine_Salvage      master:gjo  Methionine_Salvage      master:gjo
 Methylcitrate_cycle     master:MattC  
 Methylglyoxal_Metabolism        master:OlgaZ  
218  MLST    master:RobE  MLST    master:RobE
219  Molybdopterin_biosynthesis      master:JenZ  Molybdopterin_biosynthesis      master:JenZ
220  mycolic_acid_synthesis  master:NJ  Motility_of_Campylobacter       master:OlgaZ
221  N-Acetyl-D-Glucosamine_Utilization      master:OlgaZ  N-Acetyl-D-Glucosamine_Utilization      master:OlgaZ
 N-heterocyclic_aromatic_compound_degradation    master:OlgaV  
222  N-linked_Glycosylation_in_Bacteria      master:OlgaZ  N-linked_Glycosylation_in_Bacteria      master:OlgaZ
223  n-Phenylalkanoic_acid_degradation       master:OlgaV  n-Phenylalkanoic_acid_degradation       master:OlgaV
224  Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes      master:OlgaV  Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes      master:OlgaV
225  NAD_and_NADP_cofactor_biosynthesis_global       master:AndreiO  NAD_and_NADP_cofactor_biosynthesis_global       master:AndreiO
226  NAD_and_NADP_cofactor_biosynthesis_in_pathogens master:AndreiO  NAG_short       master:rodionov
 NAD_and_NADP_paper      master:SvetaG  
 NAD_and_NADP_tutorial_10        master:AndreiO  
 Naphtalene_and_antracene_degradation    master:OlgaV  
227  NiFe_hydrogenase_maturation     master:gjo  NiFe_hydrogenase_maturation     master:gjo
228  Nitrate_and_nitrite_ammonification      master:rodionov  Nitrate_and_nitrite_ammonification      master:rodionov
229  Nitrosative_stress      master:rodionov  Nitrosative_stress      master:rodionov
230    Nudix_proteins_(nucleoside_triphosphate_hydrolases)     master:gjo
231  NusA-TFII_Cluster       master:gjo  NusA-TFII_Cluster       master:gjo
232  O-linked_flagella_Glycosylation master:OlgaZ  One-carbon_metabolism_by_tetrahydropterines     master:OlgaV
 Octadecanoids   master:OlgaV  
233  Osmotically_activated_L-carnitine_ABC_transporter_in_Listeria   master:JenZ  Osmotically_activated_L-carnitine_ABC_transporter_in_Listeria   master:JenZ
234  Oxidative_stress        master:OlgaV  Oxidative_stress        master:OlgaV
 Oxidative_stress_(animal_systems)       master:OlgaV  
 Oxidative_stress_in_bacteria    master:OlgaV  
235  p-Hydroxybenzoate_degradation   master:OlgaV  p-Hydroxybenzoate_degradation   master:OlgaV
 P-type_ATPase_transporter_potassium_(TC_3.A.3.7.1)      master:MattC  
 P_uptake_(cyanobacteria)        master:acm_at_mit  
236  Pentose_phosphate_pathway       master:SvetaG  Pentose_phosphate_pathway       master:SvetaG
237  Peptidoglycan_Biosynthesis      master:RickS  Peptidoglycan_Biosynthesis      master:RickS
238    Peptidyl-prolyl_cis-trans_isomerase     master:gjo
239  Phenylacetate_pathway_of_aromatic_compound_degradation  master:OlgaV  Phenylacetate_pathway_of_aromatic_compound_degradation  master:OlgaV
240  Phenylalanine_synthesis master:MikeK  Phenylalanine_synthesis master:MikeK
 Phenylpropanoid_compound_degradation    master:OlgaV  
 Phenylpropanoids_general_biosynthesis   master:OlgaV  
241  Phenylpropionate_Degradation    master:OlgaV  Phenylpropionate_Degradation    master:OlgaV
242  Phosphoglycerate_mutase_protein_family  master:SvetaG  Phosphorylcholine_incorporation_in_LPS  master:OlgaZ
243  Phosphotransferase_enzyme_II_-_Glucose_class_permease   master:JenZ  Phosphotransferase_enzyme_II_-_Glucose_class_permease   master:JenZ
244  Phosphotransferase_enzyme_II_-_Lactose_class_permease   master:JenZ  Phosphotransferase_enzyme_II_-_Lactose_class_permease   master:JenZ
245  Phosphotransferase_enzyme_II_-_Mannitol_class_permease  master:JenZ  Phosphotransferase_enzyme_II_-_Mannitol_class_permease  master:JenZ
246  Phosphotransferase_enzyme_II_-_Mannose_family_permease  master:JenZ  Phosphotransferase_enzyme_II_-_Mannose_family_permease  master:JenZ
247  Photosystem_I   master:SvetaG  Photosystem_I   master:SvetaG
248  Photosystem_II  master:SvetaG  Photosystem_II  master:SvetaG
249  Phycobilisome   master:OlgaZ  PnuC-like_transporters  master:rodionov
 Phytoalexin_biosynthesis        master:OlgaV  
 Phytochromes    master:OlgaZ  
 Phytosterol_biosynthesis        master:OlgaV  
 Plastoquinone_Biosynthesis      master:OlgaZ  
250  Polyadenylation_bacterial       master:gjo  Polyadenylation_bacterial       master:gjo
251  Polyamine_Metabolism    master:InesT_UCSD  Polyhydroxybutyrate_metabolism  master:OlgaV
 polyisoprenoid_biosynthesis     master:MattC  
 polyprenyl_synthesis    master:NJ  
252  Porphyrin,_Heme,_and_Siroheme_Biosynthesis      master:SvetaG  Porphyrin,_Heme,_and_Siroheme_Biosynthesis      master:SvetaG
253  ppGpp_biosynthesis      master:MikeK  ppGpp_biosynthesis      master:MikeK
254  Proline_Catabolism      master:laszloC  Proline_reductase       master:gjo
 Proline_degradation     master:unknown  
 Proline_degradation1    master:unknown  
255  Proline_Synthesis       master:RickS  Proline_Synthesis       master:RickS
256  Propanediol_utilization master:gjo  Propanediol_utilization master:gjo
257  Prophage-encoded_Exotoxins      master:RamyA  Prophage-encoded_Exotoxins      master:RamyA
 Prophage_lysogenic_conversion_modules   master:RamyA  
258  Proteasome_archaeal     master:gjo  Proteasome_archaeal     master:gjo
259  Proteasome_eukaryotic   master:gjo  Proteasome_eukaryotic   master:gjo
 Protection_from_Reactive_Oxygen_Species master:MikeK  
 Protein_Acetylation_and_Deacetylation_in_Bacteria       master:AndreiO  
260  Protein_degradation     master:gjo  Protein_degradation     master:gjo
 Proteolysis_in_bacteria,_ATP-dependent  master:OlgaZ  
261  Protocatechuate_branch_of_beta-ketoadipate_pathway      master:OlgaV  Protocatechuate_branch_of_beta-ketoadipate_pathway      master:OlgaV
 Protozoan_cytostatics_and_differentiation_factors       master:OlgaV  
262  Pterin_biosynthesis     master:vcrecy  Pterin_biosynthesis     master:vcrecy
263  Purine_conversions      master:OlgaV  Purine_conversions      master:OlgaV
264  pyrimidine_conversions  master:RossO  Purine_Utilization      master:OlgaV
265  Pyrroloquinoline_Quinone_biosynthesis   master:OlgaZ  Putative_sulfate_assimilation_cluster   master:OlgaV
266    Pyridoxin_(Vitamin_B6)_Biosynthesis     master:OlgaZ
267  Pyruvate:ferredoxin_oxidoreductase      master:SvetaG  Pyruvate:ferredoxin_oxidoreductase      master:SvetaG
268  Pyruvate_Alanine_Serine_Interconversions        master:JasonS_UCSD  Pyruvate_Alanine_Serine_Interconversions        master:JasonS_UCSD
269  Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP       master:SvetaG  Pyruvate_metabolism_I:_anaplerotic_reactions,_PEP       master:SvetaG
270    Pyruvate_metabolism_II:_acetyl-CoA,_acetogenesis_from_pyruvate  master:SvetaG
271  Queuosine-Archaeosine_Biosynthesis      master:vcrecy  Queuosine-Archaeosine_Biosynthesis      master:vcrecy
 Quinate_degradation     master:OlgaV  
 Quinolinic_acid_and_its_derivatives     master:OlgaV  
272  Quorum_Sensing:_Autoinducer-2_Synthesis master:AndrewJ  Quorum_Sensing:_Autoinducer-2_Synthesis master:AndrewJ
 Redox-dependent_regulation_of_nucleus_processes master:OlgaV  
 Resistance_to_fluoroquinolones  master:MattC  
 Resistance_to_Vancomycin        master:MattC  
273  Respiratory_Complex_I   master:OlgaV  Respiratory_Complex_I   master:OlgaV
274  Respiratory_dehydrogenases_1    master:OlgaV  Respiratory_dehydrogenases_1    master:OlgaV
275  Riboflavin_metabolism   master:rodionov  Riboflavin_metabolism   master:rodionov
276  Ribonuclease_P_archaeal_and_eukaryal    master:gjo  Ribonuclease_P_archaeal_and_eukaryal    master:gjo
277  Ribonucleotide_reduction        master:rodionov  Ribonucleotide_reduction        master:rodionov
 Ribose_and_deoxyribose_phosphate_metabolism     master:MattC  
278  Ribosome_biogenesis_bacterial   master:gjo  Ribosome_biogenesis_bacterial   master:gjo
279  Ribosome_LSU_bacterial  master:gjo  Ribosome_LSU_bacterial  master:gjo
280  Ribosome_LSU_chloroplast        master:gjo  Ribosome_LSU_chloroplast        master:gjo
# Line 358  Line 284 
284  Ribosome_SSU_chloroplast        master:gjo  Ribosome_SSU_chloroplast        master:gjo
285  Ribosome_SSU_eukaryotic_and_archaeal    master:gjo  Ribosome_SSU_eukaryotic_and_archaeal    master:gjo
286  Ribosome_SSU_mitochondrial      master:gjo  Ribosome_SSU_mitochondrial      master:gjo
287    RNA_3'-terminal_phosphate_cyclase       master:gjo
288  RNA_polymerase_archaeal master:gjo  RNA_polymerase_archaeal master:gjo
289  RNA_polymerase_archaeal_initiation_factors      master:gjo  RNA_polymerase_archaeal_initiation_factors      master:gjo
290  RNA_polymerase_bacterial        master:gjo  RNA_polymerase_bacterial        master:gjo
# Line 367  Line 294 
294  RNA_polymerase_II_initiation_factors    master:gjo  RNA_polymerase_II_initiation_factors    master:gjo
295  RNA_polymerase_III      master:gjo  RNA_polymerase_III      master:gjo
296  Rrf2_family_transcriptional_regulators  master:rodionov  Rrf2_family_transcriptional_regulators  master:rodionov
297    SA:14-24        master:RossO
298  Salicylate_ester_degradation    master:OlgaV  Salicylate_ester_degradation    master:OlgaV
 Salicylic_acid_biosynthesis1    master:OlgaV  
299  Selenocysteine_metabolism       master:gjo  Selenocysteine_metabolism       master:gjo
300    Serine-glyoxylate_cycle master:OlgaV
301  Serine_Biosynthesis     master:MikeK  Serine_Biosynthesis     master:MikeK
302  Siderophore_Aerobactin_and_Ferrichrome_Biosynthesis     master:MikeK  Sialic_Acid_Metabolism  master:OlgaZ
 Siderophore_enterobactin_biosynthesis   master:MattC  
 Siderophore_enterobactin_biosynthesis_and_ferric_enterbactin_transport  master:MattC  
 Siderophore_Yersiniabactin_Biosynthesis master:MikeK  
 SLO-NADGH_Locus master:RamyA  
303  Sodium_Hydrogen_Antiporter      master:JenZ  Sodium_Hydrogen_Antiporter      master:JenZ
304  Soluble_cytochromes_and_functionally_related_electron_carriers  master:OlgaV  Soluble_cytochromes_and_functionally_related_electron_carriers  master:OlgaV
305  SpeB-SpeF_extended_regulon      master:RamyA  SpeB-SpeF_extended_regulon      master:RamyA
 Sphingolipid_biosynthesis       master:JorgeF  
306  Spliceosome     master:gjo  Spliceosome     master:gjo
307  Spore_Coat      master:RickS  Spore_Coat      master:RickS
 Steroid_sulfates        master:OlgaV  
 Streptococcal_Hyaluronic_Acid_Capsule   master:RamyA  
308  Streptococcal_Mga_Regulon       master:RamyA  Streptococcal_Mga_Regulon       master:RamyA
309  Streptococcus_pyogenes_Transcription_Regulators master:RamyA  Streptococcus_pneumoniae_Vancomycin_Tolerance_Locus     master:RamyA
310    Streptococcus_pyogenes_recombinatorial_zone     master:RamyA
311  Streptococcus_pyogenes_Virulome master:RamyA  Streptococcus_pyogenes_Virulome master:RamyA
312  Streptolysin_S_Biosynthesis_and_Transport       master:RamyA  Streptolysin_S_Biosynthesis_and_Transport       master:RamyA
313  Streptomycin_biosynthesis       master:OlgaV  Streptomycin_biosynthesis       master:OlgaV
 Suberine_biosynthesis   master:OlgaV  
314  Succinate_dehydrogenase master:OlgaV  Succinate_dehydrogenase master:OlgaV
315  Sucrose_Metabolism      master:MattC  Sugar-phosphate_stress_regulation       master:gjo
 Sulfate_assimilation    master:MattC  
316  Sulfate_to_Sulfide      master:RobE  Sulfate_to_Sulfide      master:RobE
 Sulfur_Metabolism       master:RobE  
 Tannin_biosynthesis     master:OlgaV  
317  Taurine_Utilization     master:RobE  Taurine_Utilization     master:RobE
318  TCA_Cycle       master:OlgaV  TCA_Cycle       master:OlgaV
319  Teichoic_acid_Biosynthesis      master:OlgaZ  Teichoic_and_lipoteichoic_acids_biosynthesis    master:OlgaV
320    Teichuronic_acid_biosynthesis   master:OlgaV
321  Terminal_cytochrome_C_oxidases  master:OlgaV  Terminal_cytochrome_C_oxidases  master:OlgaV
322  Terminal_cytochrome_oxidases    master:OlgaV  Terminal_cytochrome_oxidases    master:OlgaV
323  Terpen_biosynthesis     master:OlgaV  Tetrathionate_respiration       master:gjo
324  The_Tartronate_Semialdehyde_Hub master:RossO  The_Tartronate_Semialdehyde_Hub master:RossO
325  Thiamin_biosynthesis    master:rodionov  Thiamin_biosynthesis    master:rodionov
326  Thioredoxin-disulfide_reductase master:gjo  Thioredoxin-disulfide_reductase master:gjo
327  Threonine_degradation   master:OlgaV  Threonine_degradation   master:OlgaV
328  Threonine_synthesis     master:MikeK  Threonine_synthesis     master:MikeK
 Tocopherol_Biosynthesis master:OlgaZ  
 Toluene_degradation     master:OlgaV  
329  Transcription_factors_bacterial master:gjo  Transcription_factors_bacterial master:gjo
330  Transcription_factors_cyanobacterial_RpoD-like_sigma_factors    master:gjo  Transcription_factors_cyanobacterial_RpoD-like_sigma_factors    master:gjo
331  Translation_elongation_factors_eukaryotic_and_archaeal  master:gjo  Translation_elongation_factors_eukaryotic_and_archaeal  master:gjo
332  Translation_factors_bacterial   master:gjo  Translation_factors_bacterial   master:gjo
333  Translation_initiation_factors_eukaryotic_and_archaeal  master:gjo  Translation_initiation_factors_eukaryotic_and_archaeal  master:gjo
334  Transport_of_Nickel_and_Cobalt  master:rodionov  Transport_of_Nickel_and_Cobalt  master:rodionov
 Trehalose_biosynthesis  master:MattC  
 Triacylglycerol_biosynthesis    master:unknown  
 Triacylglycerol_degradation     master:unknown  
335  Tricarballylate_Utilization     master:RossO  Tricarballylate_Utilization     master:RossO
336  tRNA_aminoacylation     master:gjo  tRNA_aminoacylation     master:gjo
337  tRNA_aminoacylation,_mitochondrial      master:gjo  tRNA_aminoacylation,_mitochondrial      master:gjo
338  tRNA_processing master:gjo  tRNA_processing master:gjo
339  tRNA_splicing   master:gjo  tRNA_splicing   master:gjo
340  Tryptophan_synthesis    master:VeronikaV  Tryptophan_synthesis    master:VeronikaV
341    Two-component_regulatory_systems_in_Campylobacter       master:OlgaZ
342  Tyrosine_synthesis      master:MikeK  Tyrosine_synthesis      master:MikeK
343  Ubiquinone_Biosynthesis master:OlgaZ  Ubiquinone_Biosynthesis master:OlgaZ
344  Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes master:OlgaV  Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes master:OlgaV
# Line 432  Line 347 
347  Urea_decomposition      master:rodionov  Urea_decomposition      master:rodionov
348  Utilization_of_glutathione_as_a_sulphur_source  master:OlgaV  Utilization_of_glutathione_as_a_sulphur_source  master:OlgaV
349  V-Type_ATP_synthase     master:RickS  V-Type_ATP_synthase     master:RickS
350  Valine_Biosynthesis     master:Straw  Vibrio_pathogenicity_island     master:JenZ
351  Valine_degradation      master:OlgaZ  Wyeosine-MimG_Biosynthesis      master:vcrecy
352  Vibrio_Experimental_Type_III_secretion_system   master:JanelleT  Xylose_utilization      master:rodionov
353    yrdC    master:vcrecy
354  //  //
355  END  END
356  ;  ;
# Line 617  Line 533 
533          }          }
534          foreach $tuple ($fig->mapped_prot_ids($peg))          foreach $tuple ($fig->mapped_prot_ids($peg))
535          {          {
536              if ($tuple->[0] =~ /^fig\|/)              if (($tuple->[0] =~ /^fig\|/) && $fig->is_real_feature($tuple->[0]))
537              {              {
538                  $pegs{$tuple->[0]} = 1;                  $pegs{$tuple->[0]} = 1;
539              }              }

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