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revision 1.3, Wed Aug 17 12:24:43 2005 UTC revision 1.6, Thu Dec 22 00:52:43 2005 UTC
# Line 1  Line 1 
1    #
2    # Copyright (c) 2003-2006 University of Chicago and Fellowship
3    # for Interpretations of Genomes. All Rights Reserved.
4    #
5    # This file is part of the SEED Toolkit.
6    #
7    # The SEED Toolkit is free software. You can redistribute
8    # it and/or modify it under the terms of the SEED Toolkit
9    # Public License.
10    #
11    # You should have received a copy of the SEED Toolkit Public License
12    # along with this program; if not write to the University of Chicago
13    # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14    # Genomes at veronika@thefig.info or download a copy from
15    # http://www.theseed.org/LICENSE.TXT.
16    #
17    
18  package Assignments;  package Assignments;
19    
20  use Carp;  use Carp;
# Line 450  Line 467 
467      if (! $func)                                           { return "hypothetical protein" }      if (! $func)                                           { return "hypothetical protein" }
468      if ($func =~ /^hypothetical (\S+ )?protein .*$/i)      { return "hypothetical protein" }      if ($func =~ /^hypothetical (\S+ )?protein .*$/i)      { return "hypothetical protein" }
469      if ($func =~ /^[a-zA-Z]{1,2}\d{2,5}( protein)?$/i)     { return "hypothetical protein" }      if ($func =~ /^[a-zA-Z]{1,2}\d{2,5}( protein)?$/i)     { return "hypothetical protein" }
470        if ($func =~ /^similar to ORF\d+$/)                    { return "hypothetical protein" }
471        if ($func =~ /^(Alr|As|All|Tlr|Tll|Glr|Blr|Slr|SEW|pANL)\d+( protein)?$/i) { return "hypothetical protein" }
472        if ($func =~ /^\d{5}/)                                 { return "hypothetical protein" }
473        if ($func =~ /unknown protein/)                        { return "hypothetical protein" }
474    
475      return $func;      return $func;
476  }  }

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