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Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 29 20:01:30 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.18: +2 -2 lines
Diff to previous 1.18
update comments

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 29 19:50:04 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.17: +37 -18 lines
Diff to previous 1.17
update options for psiblast_search

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 23:44:11 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.16: +15 -4 lines
Diff to previous 1.16
support bootstrapped tree

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 00:43:15 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.15: +1 -0 lines
Diff to previous 1.15
print psiblast history to STDERR

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 00:25:37 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.14: +108 -2 lines
Diff to previous 1.14
add incremental_psiblast_search

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 24 04:06:02 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.13: +2 -5 lines
Diff to previous 1.13
change psiblast database name

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 20:17:07 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.12: +8 -4 lines
Diff to previous 1.12
use statements adjustment

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 19:42:55 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.11: +2 -2 lines
Diff to previous 1.11
support for make_tree

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 16:58:18 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.10: +50 -3 lines
Diff to previous 1.10
add make_tree

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 16 22:53:28 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.9: +3 -2 lines
Diff to previous 1.9
change organism directory

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 12 14:27:28 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.8: +4 -2 lines
Diff to previous 1.8
temporary psiblast db

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 11 07:40:20 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.7: +279 -172 lines
Diff to previous 1.7
add support for psiblast search

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 10 17:31:40 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
change default alignment tool to Clustal

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 10 16:54:47 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.5: +234 -13 lines
Diff to previous 1.5
Updates and bug fixes

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 28 13:13:34 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.4: +1 -0 lines
Diff to previous 1.4
bug fix

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 21:17:15 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.3: +2 -0 lines
Diff to previous 1.3
bug fix

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 21:06:39 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.2: +7 -2 lines
Diff to previous 1.2
options for e-value and min-identity cutoff

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 20:41:18 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.1: +70 -1 lines
Diff to previous 1.1
add psiblast profile search

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 20:05:30 2010 UTC (9 years ago) by fangfang
Branch: MAIN
module for local alignment and tree routines

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