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Index of /FigKernelPackages

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File (rev) Rev. Age Author Last log entry
 Parent Directory        
tests/        
Export/        
tree_utilities.pm  1.4  15 years  overbeek  minor fixes to subsys.cgi and tree_utilities.pm
set_utilities.pm  1.1.1.1  16 years  efrank   import
raelib.pm  1.20  14 years  redwards  minor changes to pir.cgi
raedraw.pm  1.8  14 years  redwards  changed tag/value pairs completely. Ooops!
gjoseqlib.pm  1.1.1.1  16 years  efrank   import
gjolib.pm  1.1.1.1  16 years  efrank   import
gjoalignment.pm  1.1  14 years  golsen  Add a module with some routines for adding sequences to alignments.
fastDNAml.pm  1.1  15 years  overbeek  add tree manipulation utilities
__init__.py  1.1  15 years  olson  New file needed to make this a python module.
UserDB.pm  1.1  15 years  olson  Simple user database. Initializes state from assignments and annotations existin...
Tracer.pm  1.11  14 years  parrello  Added OpenDir method for reading directories. Enhanced Open to allow return on e...
Subsystem.pm  1.54  14 years  overbeek  major change to BBHs (use precomputed)
SproutSearch.pm  1.7  14 years  olson  Use $FIG_Config::sproutData instead of FIG_Config::fig/SproutData
SproutFIG.pm  1.8  15 years  olson  sprout debugging
Sim.pm  1.4  14 years  parrello  *** empty log message ***
SeedDas.pm  1.16  14 years  redwards  changed tag/value pairs completely. Ooops!
SameFunc.pm  1.6  14 years  overbeek  add assign_to_close_strains
SFXlate.pm  1.23  14 years  parrello  *** empty log message ***
README  1.1.1.1  16 years  efrank   import
RC.pm  1.1.1.1  16 years  efrank   import
PageBuilder.pm  1.1  14 years  parrello  *** empty log message ***
P2Pupdate.pm  1.47  14 years  olson   Add install-anno-from gff routine (first cut). Fix mismatched brace.
P2P.pm  1.30  14 years  olson  Move P2PQueue and JobQueue out of FIG/Data into FIG/var.
Makefile  1.7  15 years  olson  Fix makefiles for change in releasetools.
JobScheduler.pm  1.4  14 years  olson  Bundle of misc bob changes, including sim computation code and search-for-substr...
InterfaceRoutines.pm  1.1  14 years  overbeek  interface routines hack
HTML.py  1.5  14 years  olson  anther dumb typo
HTML.pm  1.42  14 years  olson  add %options to the compute_page_header routine
GenoGraphics.pm  1.12  14 years  golsen  Heavy workover of generate_html to support: Pop-up tool tips when there is n...
FigGFF.pm  1.12  14 years  olson  Fix up format stuff.
FIGtree.pm  1.1  15 years  golsen   G Rendon
FIGrpc.pm  1.2  15 years  olson  Don't need to create a new fig at the toplevel; it was breaking import
FIGnet.pm  1.1.1.1  16 years  efrank   import
FIGjs.pm  1.5  14 years  redwards  real fix to javascript
FIGRules.pm  1.1  15 years  olson  Move this here from Sprout.
FIGGenDB.pm  1.4  15 years  olson  GenDB changes.
FIGAttributes.pm  1.1  15 years  olson  Code to support annotation of FIG API.
FIG2.py  1.1  15 years  olson  First cut at python FIG module that uses the CallPerl direct call interface.
FIG.py  1.11  14 years  olson  Added helper stuff for new clearing house interface.
FIG.pm  1.293  14 years  overbeek  Ross change commit after cleanup
DocUtils.pm  1.2  14 years  parrello  *** empty log message ***
DBrtns.pm  1.19  14 years  olson  Add support for specification of a database host.
DBKernel.pm  1.4  14 years  olson  Feh. host specifier for DBI is different in mysql and postgres.
Construct.pm  1.1  15 years  olson  add higher-level construct support
ClusterWorker.pm  1.1  14 years  olson  Split the Cluster::Worker package out to its own file so it can be used on hosts...
Cluster.pm  1.10  14 years  olson  More cluster fixes.
Clearinghouse.py  1.9  14 years  olson  Feh. host specifier for DBI is different in mysql and postgres.
Clearinghouse.pm  1.2  15 years  olson  Add capability for :scalar :list :remote annotations to FIG interface. This work...
Blast.pm  1.2  15 years  olson  Force blastall and formatdb to be run using a full path to $FIG_Config::ext_bin....
Assignments.pm  1.1  14 years  overbeek  clean up of auto assignments routines

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