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File Rev. Age Author Last log entry
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ACH.pm  1.7  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
ACHserver.pm  1.16  10 years  parrello  Removed from the SAS distribution.
ANNO.pm  1.8  9 years  olson  kmer info changes
ANNOserver.pm  1.20  9 years  parrello  Fixed a POD error.
AT.pm  1.5  9 years  fangfang  always return psiblast search history
ATserver.pm  1.2  9 years  fangfang  default url set to biobig
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.11  9 years  parrello  Updates for single-genome loader.
AlignTree.pm  1.24  9 years  fangfang  update default values
AnnoClearinghouse.pm  1.44  10 years  wilke  Modified sql query to ? syntax
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.19  10 years  parrello  Updated to Sapling Server for Berkeley.
BerkTable.pm  1.2  9 years  olson  fix arg
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
CO.pm  1.6  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
COPYING.TXT  1.1  14 years  olson  add license file
COserver.pm  1.13  10 years  parrello  Removed from the SAS distribution.
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClientThing.pm  1.18  9 years  parrello  Support for local SQLite servers.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
Clustering.pm  1.6  9 years  overbeek  added double and triple linkage
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  10 years  overbeek  new Contigs.pm and compare_coding.pm
CorrTableEntry.pm  1.4  9 years  olson  Add num_matching_functions for column 19
Correspondence.pm  1.4  9 years  overbeek  correct the identity check
CorrespondenceCache.pm  1.1  9 years  parrello  Updates for new expression-data method.
DBKernel.pm  1.65  9 years  olson  Caching / FCGI speedup modifications.
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.17  10 years  parrello  Fixed some bad links.
DocUtils.pm  1.18  10 years  parrello  Added documentation functions to the Sapling server.
ErrorMessage.pm  1.2  9 years  olson  remove unused use CGI.
ExpressionDir.pm  1.5  9 years  olson  update
FC.pm  1.21  10 years  parrello  Fixed a bug in "co_occurrence_evidence".
FF.pm  1.35  9 years  disz  FigFam 6 digit fix
FFs.pm  1.49  9 years  olson  Clean up errors.
FFserver.pm  1.23  10 years  parrello  Removed from the SAS distribution.
FIG.pm  1.824  9 years  gdpusch  Hack to prevent GC=1 from blowing up.
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  10 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.18  9 years  olson  Add FIGV and FIGM function_of_bulk
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.54  10 years  olson  Optimize to_structured_english.
FIGStatisticalModels.pm  1.7  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.96  9 years  gdpusch  Modified to gracefully handle Organism directories with no or empty Subsystems/ ...
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.33  9 years  gdpusch  Removed duplicate declaration line.
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.4  9 years  olson  Changes for DesktopRast. CVHnS: ------------------------------------------------...
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.25  10 years  parrello  Added a method to compute the total location length.
GenoGraphics.pm  1.24  10 years  golsen  Back pedal on the attempt to diagnose jpeg and png availability in GenoGraphics
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.16  10 years  olson  Add lock retries; probably not needed now that I think I've fixed FileLocking bu...
GenomeMetaDB.pm  1.5  10 years  jared  added update_path
GenomeMetaDatabase.pm  1.1  10 years  jared  *** empty log message ***
HTML.pm  1.130  10 years  arodri7  added links to set_prot_links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
Kmers.pm  1.28  9 years  olson  fix off-by-one
KmersOld.pm  1.1  10 years  olson  version of Kmers.pm before the argument changes; made to go with figfam_server_2...
ListServerScripts.pm  1.1  9 years  parrello  Added to support server script listing.
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.13  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
MgRastSims.pm  1.1  10 years  redwards  a new package for getting sims for the mg-rast
MinimalTracer.pm  1.1  9 years  olson  More FS_RAST modes & supporting code for SAS use.
NCBI_genetic_code.pm  1.3  9 years  olson  add SAS header
NCBI_taxonomy.pm  1.3  9 years  golsen  Change LineageShort to LineageAbbrev, to better match NCBI terminology.
NRTools.pm  1.4  10 years  olson  update to new metadata standard
NewGenome.pm  1.80  10 years  parrello  Protected a "new FIG" in open code with an eval. THIS MUST BE FIXED.
Observation.pm  1.82  10 years  paczian  fixed hit and query length (cannot be null)
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.15  10 years  overbeek  switch from clustalw to muscle
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
ParalogResolution.pm  1.5  10 years  golsen  Modifications to support line-drawing character set in tree printer plots.
PartitionSeqs.pm  1.3  10 years  overbeek  return either scalar or list
Phage.pm  1.3  9 years  redwards  minor correction
PickFeatureSet.pm  1.2  10 years  overbeek  add .html to HTML files
PinnedRegions.pm  1.34  9 years  olson  fix unlink here too
ProtFamLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  10 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtSims.pm  1.19  9 years  overbeek  turn off debugging print
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RAST_submission.pm  1.28  9 years  olson  typofix
RASTserver.pm  1.23  9 years  gdpusch  Fixed bugs in and added more support for Viral and Euk jobs.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SAP.pm  1.126  9 years  parrello  Added some support for the SQLite stuff.
SAPserver.pm  1.14  9 years  parrello  Support for local SQLite servers.
SAPtutorial.pm  1.10  10 years  parrello  Fixed some errors in examples of ID types.
SFXlate.pm  1.119  10 years  parrello  Added "families_containing_peg".
SS.pm  1.13  10 years  parrello  More documentation cleanup.
SSU_rRNA_reps.pm  1.3  9 years  golsen  Adjust end of one reference sequence by padding it slightly.
SSserver.pm  1.17  10 years  parrello  Removed from the SAS distribution.
SUP.pm  1.2  9 years  parrello  New methods for alignment data.
SUPserver.pm  1.1  9 years  parrello  New Sapling update support.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
SampleDir.pm  1.4  9 years  olson  More analysis fixes; user-agent setting.
SapCompareRegions.pm  1.2  9 years  parrello  New compare-regions support.
Scenario.pm  1.10  9 years  dejongh  change scenario handling to use path_info.txt
ScriptThing.pm  1.8  9 years  parrello  Expression vector support methods.
SeedAware.pm  1.6  9 years  golsen  Add a path search function to executable_for(), so that it returns undef if the ...
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedEnv.pm  1.3  10 years  parrello  Added ANNOserver. Removed deprecated servers.
SeedHTML.pm  1.3  10 years  olson  More distro fixes.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
SeedUtils.pm  1.59  9 years  golsen  Remove the "shebang".
SeedV.pm  1.9  9 years  gdpusch  Changed a debugging line to print to STDERR, not STDOUT; print only if VERBOSE.
ServerScripts.pm  1.5  9 years  overbeek  add summarize_MG_output
ServerThing.pm  1.59  9 years  parrello  Fix to reduce Sapling dependence.
Signatures.pm  1.2  9 years  parrello  Various POD fixes.
Sim.pm  1.14  10 years  olson  Distro fixups
SimFC.pm  1.3  10 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.8  10 years  parrello  Added a method to extract saved messages.
Subsystem.pm  1.147  9 years  overbeek  minor fix
TBLstuff.pm  1.2  10 years  overbeek  minor fixes
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.11  10 years  parrello  Fixed display glitch for pure white space.
ToCall.pm  1.11  10 years  gdpusch  Major rewrite to prevent already-found PEGs from being re-called by every stage ...
Tracer.pm  1.131  9 years  parrello  Changed a "die" to a "confess".
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.15  9 years  chenry  Updating ModelSEED scripts with suuport for new PPO DB
WikiTools.pm  1.8  10 years  parrello  Fixed a glitch in list rendering.
WriteGenbank.pm  1.1  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.3  10 years  golsen  New super duper ala Peter T. Hooper paralog resolution interface.
collect_related_sequences.pm  1.6  9 years  golsen  Update to use SeedAware.pm (and do some general clean-up).
compare_coding.pm  1.10  9 years  golsen  Integrate use of SeedAware.pm
display_related_genomes.pm  1.2  9 years  golsen  Minor documentation changes in code.
fastDNAml.pm  1.2  14 years  olson  Added license words.
ffxtree.pm  1.13  9 years  fangfang  update
find_homologs.pm  1.4  9 years  golsen  use SeedAware Many changes in details of code.
find_special_proteins.pm  1.12  9 years  olson  typod the declaration
gd_tree_0.pm  1.5  9 years  golsen  Extensive reworking of color management.
gjoalign2html.pm  1.5  9 years  fangfang  SAS component
gjoalignandtree.pm  1.14  9 years  fangfang  update options
gjoalignment.pm  1.36  9 years  golsen  Cleaner handling of external binary programs.
gjocolorlib.pm  1.7  9 years  golsen  Added support for luma (HSY color definitions). Changed all code so that html co...
gjogenbank.pm  1.7  9 years  golsen  Add support for writing GenBank entries. A few bug fixes to reading entries. Cle...
gjogff.pm  1.1  9 years  golsen  Some basic code for reading gff files. Details will almost certainly change.
gjolib.pm  1.3  10 years  olson  Add more modules to the SAS toolkit.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.25  9 years  golsen  Change behavior of reroot_tree() to ignore distance if there is only one node.
gjoparseblast.pm  1.8  9 years  golsen  Fix two minor typographical errors in the documentation.
gjophylip.pm  1.9  9 years  golsen  Fix a cosmetic issue in the cleaning of sequences for PHYLIP.
gjoseqlib.pm  1.24  9 years  golsen  Some minor changes to translation with user codes (saving the ambiguous codon tr...
gjostat.pm  1.3  9 years  golsen  Convert die to confess.
model.pm  1.36  9 years  dejongh  change scenario handling to use path_info.txt
proml.pm  1.9  10 years  golsen  Minor updates to SEED awareness.
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  11 years  redwards  adding a randomizer function
representative_sequences.pm  1.17  9 years  golsen  Many updates to make better use of SeedAware.pm.
selenoprotein_ref_seq.pm  1.5  10 years  golsen  Add some reference sequences and replace ; with @ in functions.
set_utilities.pm  1.3  10 years  overbeek  make SAS components
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.20  10 years  olson  Add more modules to the SAS toolkit.
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2011_0119
ALITRE.pm (dead) No revisions exist on rast_rel_2011_0119
ALITREserver.pm (dead) No revisions exist on rast_rel_2011_0119
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2011_0119
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2011_0119
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2011_0119
AliTreeSims.pm (dead) No revisions exist on rast_rel_2011_0119
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2011_0119
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2011_0119
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2011_0119
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2011_0119
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2011_0119
BBasicLocation.pm (dead) No revisions exist on rast_rel_2011_0119
Bin.pm (dead) No revisions exist on rast_rel_2011_0119
BinningReports.pm (dead) No revisions exist on rast_rel_2011_0119
Biochemistry.pm (dead) No revisions exist on rast_rel_2011_0119
BlankSVP.pm (dead) No revisions exist on rast_rel_2011_0119
BlastInterface.pm (dead) No revisions exist on rast_rel_2011_0119
Boolean.pm (dead) No revisions exist on rast_rel_2011_0119
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2011_0119
CallBlast.pm (dead) No revisions exist on rast_rel_2011_0119
CallByProjection.pm (dead) No revisions exist on rast_rel_2011_0119
CallScanner.pm (dead) No revisions exist on rast_rel_2011_0119
Category.pm (dead) No revisions exist on rast_rel_2011_0119
CloseGenomes.pm (dead) No revisions exist on rast_rel_2011_0119
CloseStrains.pm (dead) No revisions exist on rast_rel_2011_0119
ClusterPairs.pm (dead) No revisions exist on rast_rel_2011_0119
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2011_0119
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2011_0119
CommonCGI.pm (dead) No revisions exist on rast_rel_2011_0119
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2011_0119
Corresponds.pm (dead) No revisions exist on rast_rel_2011_0119
CountTransactions.pm (dead) No revisions exist on rast_rel_2011_0119
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2011_0119
Dlits.pm (dead) No revisions exist on rast_rel_2011_0119
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2011_0119
EvalCom.pm (dead) No revisions exist on rast_rel_2011_0119
EvalCon.pm (dead) No revisions exist on rast_rel_2011_0119
EvalHelper.pm (dead) No revisions exist on rast_rel_2011_0119
FBAMODEL.pm (dead) No revisions exist on rast_rel_2011_0119
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2011_0119
FBasicLocation.pm (dead) No revisions exist on rast_rel_2011_0119
FFB3.pm (dead) No revisions exist on rast_rel_2011_0119
FIGMODEL.pm (dead) No revisions exist on rast_rel_2011_0119
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2011_0119
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2011_0119
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2011_0119
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2011_0119
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2011_0119
FIG_Config.pm (dead) No revisions exist on rast_rel_2011_0119
FIG_Config.py (dead) No revisions exist on rast_rel_2011_0119
FQUtils.pm (dead) No revisions exist on rast_rel_2011_0119
FastA.pm (dead) No revisions exist on rast_rel_2011_0119
FastQ.pm (dead) No revisions exist on rast_rel_2011_0119
FigFam.pm (dead) No revisions exist on rast_rel_2011_0119
FigFams.pm (dead) No revisions exist on rast_rel_2011_0119
FigSubsystem.pm (dead) No revisions exist on rast_rel_2011_0119
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2011_0119
FileIOFunctions.pm (dead) No revisions exist on rast_rel_2011_0119
Find_RNAs.pm (dead) No revisions exist on rast_rel_2011_0119
FixTransactions.pm (dead) No revisions exist on rast_rel_2011_0119
GEO.pm (dead) No revisions exist on rast_rel_2011_0119
GPUtils.pm (dead) No revisions exist on rast_rel_2011_0119
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2011_0119
GenerateClusters.pm (dead) No revisions exist on rast_rel_2011_0119
GenomeChecker.pm (dead) No revisions exist on rast_rel_2011_0119
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2011_0119
GenomeSelector.pm (dead) No revisions exist on rast_rel_2011_0119
GenomeSet.spec (dead) No revisions exist on rast_rel_2011_0119
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2011_0119
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2011_0119
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2011_0119
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2011_0119
Hsp.pm (dead) No revisions exist on rast_rel_2011_0119
IC50.pm (dead) No revisions exist on rast_rel_2011_0119
IDclient.pm (dead) No revisions exist on rast_rel_2011_0119
IS_Data.pm (dead) No revisions exist on rast_rel_2011_0119
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2011_0119
JobScheduler.pm (dead) No revisions exist on rast_rel_2011_0119
JulianDay.pm (dead) No revisions exist on rast_rel_2011_0119
KBASE.pm (dead) No revisions exist on rast_rel_2011_0119
KBIDUtils.pm (dead) No revisions exist on rast_rel_2011_0119
KBInvoke.pm (dead) No revisions exist on rast_rel_2011_0119
KBRpcContext.pm (dead) No revisions exist on rast_rel_2011_0119
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2011_0119
KmerClassifier.pm (dead) No revisions exist on rast_rel_2011_0119
KmerClient.pm (dead) No revisions exist on rast_rel_2011_0119
KmerDb.pm (dead) No revisions exist on rast_rel_2011_0119
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2011_0119
KmerMgr.pm (dead) No revisions exist on rast_rel_2011_0119
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2011_0119
Kmers2013.pm (dead) No revisions exist on rast_rel_2011_0119
LinksUI.pm (dead) No revisions exist on rast_rel_2011_0119
MD5Computer.pm (dead) No revisions exist on rast_rel_2011_0119
MODELserv.pm (dead) No revisions exist on rast_rel_2011_0119
MODELserv_client.pm (dead) No revisions exist on rast_rel_2011_0119
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2011_0119
MapToRef.pm (dead) No revisions exist on rast_rel_2011_0119
MissingRoles.pm (dead) No revisions exist on rast_rel_2011_0119
MoveAliases.pm (dead) No revisions exist on rast_rel_2011_0119
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2011_0119
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2011_0119
P3Contigs.pm (dead) No revisions exist on rast_rel_2011_0119
P3DataAPI.pm (dead) No revisions exist on rast_rel_2011_0119
P3Sequences.pm (dead) No revisions exist on rast_rel_2011_0119
P3Signatures.pm (dead) No revisions exist on rast_rel_2011_0119
P3Utils.pm (dead) No revisions exist on rast_rel_2011_0119
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2011_0119
PG.pm (dead) No revisions exist on rast_rel_2011_0119
ParseDate.pm (dead) No revisions exist on rast_rel_2011_0119
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2011_0119
PersistentSets.pm (dead) No revisions exist on rast_rel_2011_0119
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2011_0119
Prodigal.pm (dead) No revisions exist on rast_rel_2011_0119
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2011_0119
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2011_0119
RASTlib.pm (dead) No revisions exist on rast_rel_2011_0119
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2011_0119
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2011_0119
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2011_0119
ReactionPath.pm (dead) No revisions exist on rast_rel_2011_0119
RepGenome.pm (dead) No revisions exist on rast_rel_2011_0119
RiboProtQC.pm (dead) No revisions exist on rast_rel_2011_0119
RoleParse.pm (dead) No revisions exist on rast_rel_2011_0119
RoleRule.pm (dead) No revisions exist on rast_rel_2011_0119
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2011_0119
SEED.spec (dead) No revisions exist on rast_rel_2011_0119
SEEDClient.pm (dead) No revisions exist on rast_rel_2011_0119
SEEDImpl.pm (dead) No revisions exist on rast_rel_2011_0119
SEEDServer.pm (dead) No revisions exist on rast_rel_2011_0119
SRAlib.pm (dead) No revisions exist on rast_rel_2011_0119
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2011_0119
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2011_0119
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2011_0119
ScriptUtils.pm (dead) No revisions exist on rast_rel_2011_0119
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2011_0119
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2011_0119
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2011_0119
SeedSearch.pm (dead) No revisions exist on rast_rel_2011_0119
SeedURLs.pm (dead) No revisions exist on rast_rel_2011_0119
SeqStore.pm (dead) No revisions exist on rast_rel_2011_0119
ServComplex.pm (dead) No revisions exist on rast_rel_2011_0119
ServFIGfam.pm (dead) No revisions exist on rast_rel_2011_0119
ServFeature.pm (dead) No revisions exist on rast_rel_2011_0119
ServGenome.pm (dead) No revisions exist on rast_rel_2011_0119
ServIndex.pm (dead) No revisions exist on rast_rel_2011_0119
ServOTU.pm (dead) No revisions exist on rast_rel_2011_0119
ServReaction.pm (dead) No revisions exist on rast_rel_2011_0119
ServRole.pm (dead) No revisions exist on rast_rel_2011_0119
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2011_0119
ServicesUtils.pm (dead) No revisions exist on rast_rel_2011_0119
Sim2.pm (dead) No revisions exist on rast_rel_2011_0119
SimCompute.pm (dead) No revisions exist on rast_rel_2011_0119
SimsTable.pm (dead) No revisions exist on rast_rel_2011_0119
StrepRepeats.pm (dead) No revisions exist on rast_rel_2011_0119
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2011_0119
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2011_0119
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2011_0119
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2011_0119
TabFile.pm (dead) No revisions exist on rast_rel_2011_0119
TableCell.pm (dead) No revisions exist on rast_rel_2011_0119
TaxUtils.pm (dead) No revisions exist on rast_rel_2011_0119
TetraMap.pm (dead) No revisions exist on rast_rel_2011_0119
TetraProfile.pm (dead) No revisions exist on rast_rel_2011_0119
TimeZone.pm (dead) No revisions exist on rast_rel_2011_0119
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2011_0119
TraceObject.pm (dead) No revisions exist on rast_rel_2011_0119
TreeFC.pm (dead) No revisions exist on rast_rel_2011_0119
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2011_0119
UpdateServer.pm (dead) No revisions exist on rast_rel_2011_0119
WriteEMBL.pm (dead) No revisions exist on rast_rel_2011_0119
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2011_0119
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2011_0119
crispr.pm (dead) No revisions exist on rast_rel_2011_0119
find_tRNAs.pm (dead) No revisions exist on rast_rel_2011_0119
genome_frequencies.pm (dead) No revisions exist on rast_rel_2011_0119
gjoavllib.pm (dead) No revisions exist on rast_rel_2011_0119
gjocluster.pm (dead) No revisions exist on rast_rel_2011_0119
gjocodonlib.pm (dead) No revisions exist on rast_rel_2011_0119
gjocontigmap.pm (dead) No revisions exist on rast_rel_2011_0119
gjocontigs.pm (dead) No revisions exist on rast_rel_2011_0119
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2011_0119
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2011_0119
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2011_0119
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2011_0119
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2011_0119
match_to_axes.pm (dead) No revisions exist on rast_rel_2011_0119
merge_families.pl (dead) No revisions exist on rast_rel_2011_0119
overlap_resolution.pm (dead) No revisions exist on rast_rel_2011_0119
pubmed.tt (dead) No revisions exist on rast_rel_2011_0119

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