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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
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ACH.pm  1.7  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
ACHserver.pm  1.16  10 years  parrello  Removed from the SAS distribution.
ANNO.pm  1.4  10 years  parrello  Updates for glimmer training and special-protein finder.
ANNOserver.pm  1.16  10 years  parrello  Fixed a POD error.
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.10  10 years  parrello  Fixed the LocusTag match pattern.
AnnoClearinghouse.pm  1.44  11 years  wilke  Modified sql query to ? syntax
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.19  10 years  parrello  Updated to Sapling Server for Berkeley.
BinarySearch.pm  1.1  13 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
CO.pm  1.6  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
COPYING.TXT  1.1  14 years  olson  add license file
COserver.pm  1.13  10 years  parrello  Removed from the SAS distribution.
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClientThing.pm  1.13  10 years  parrello  Fixed to produce a less ugly message when there is no response content from a se...
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
Clustering.pm  1.4  10 years  overbeek  make SAS components
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  13 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  11 years  overbeek  new Contigs.pm and compare_coding.pm
DBKernel.pm  1.63  10 years  parrello  Server database recovery fix.
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.17  11 years  parrello  Fixed some bad links.
DocUtils.pm  1.18  10 years  parrello  Added documentation functions to the Sapling server.
ErrorMessage.pm  1.2  10 years  olson  remove unused use CGI.
FBAMODEL.pm  1.7  10 years  chenry  Corrected bugs in the FBA classify function.
FBAMODELserver.pm  1.2  10 years  parrello  *** empty log message ***
FC.pm  1.21  10 years  parrello  Fixed a bug in "co_occurrence_evidence".
FF.pm  1.33  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
FFs.pm  1.47  10 years  bartels  added a function
FFserver.pm  1.23  10 years  parrello  Removed from the SAS distribution.
FIG.pm  1.813  10 years  overbeek  turn off recognition of locks
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  11 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.17  10 years  olson  Support for Seedviewer Subsystems.pm speedups.
FIGMODEL.pm  1.51  10 years  chenry  More bug fixes for the model viewer.
FIGMODELObject.pm  1.4  10 years  chenry  Implemented new function to change the name of a date header.
FIGMODELTable.pm  1.14  10 years  chenry  A small number of new functions were introduced to support improved database acc...
FIGMODELdatabase.pm  1.9  10 years  chenry  Bug fixes and reorganization for model viewer.
FIGMODELmodel.pm  1.12  10 years  chenry  Minor corrections.
FIGMODELweb.pm  1.4  10 years  chenry  Reoganization of model viewer.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.54  10 years  olson  Optimize to_structured_english.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.92  10 years  olson  Support for Seedviewer Subsystems.pm speedups.
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.24  11 years  overbeek  force frameshifts to be of longer chunks
FigFam.pm  1.78  11 years  arodri7  changed to check if is_deleted_fid in sub new
FigFams.pm  1.57  10 years  bartels  added a function
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.12  10 years  chenry  Removed some functions that were placed in FIGMODEL instead.
FileLocking.pm  1.3  10 years  olson  Add support for File::FcntlLock
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.25  10 years  parrello  Added a method to compute the total location length.
GenoGraphics.pm  1.24  10 years  golsen  Back pedal on the attempt to diagnose jpeg and png availability in GenoGraphics
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.16  10 years  olson  Add lock retries; probably not needed now that I think I've fixed FileLocking bu...
GenomeMetaDB.pm  1.5  10 years  jared  added update_path
GenomeMetaDatabase.pm  1.1  10 years  jared  *** empty log message ***
HTML.pm  1.130  11 years  arodri7  added links to set_prot_links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
JulianDay.pm  1.1  11 years  chenry  *** empty log message ***
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
Kmers.pm  1.19  10 years  olson  Support constructor that takes friDB/setIDB/table.binary instead of a kmers dir....
KmersOld.pm  1.1  10 years  olson  version of Kmers.pm before the argument changes; made to go with figfam_server_2...
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.12  11 years  parrello  Removed POD stuff.
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
MgRastSims.pm  1.1  10 years  redwards  a new package for getting sims for the mg-rast
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.4  11 years  olson  update to new metadata standard
NewGenome.pm  1.80  11 years  parrello  Protected a "new FIG" in open code with an eval. THIS MUST BE FIXED.
Observation.pm  1.82  10 years  paczian  fixed hit and query length (cannot be null)
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.15  10 years  overbeek  switch from clustalw to muscle
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
ParalogResolution.pm  1.5  11 years  golsen  Modifications to support line-drawing character set in tree printer plots.
ParseDate.pm  1.1  11 years  chenry  *** empty log message ***
PartitionSeqs.pm  1.3  11 years  overbeek  return either scalar or list
PickFeatureSet.pm  1.2  11 years  overbeek  add .html to HTML files
PinnedRegions.pm  1.31  10 years  olson  use bulk lookups
ProtFamLite.pm  1.2  11 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  11 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  11 years  arodri7  added functions and made functions work
ProtSims.pm  1.12  10 years  overbeek  allow use of just blast
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RAST_submission.pm  1.24  10 years  olson  Allow anyone with access to the job to be able to upload data. Unlink the spoole...
RASTserver.pm  1.19  10 years  olson  Add chunked upload and directory support.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SAP.pm  1.86  10 years  parrello  Added "all_proteins" method.
SAPserver.pm  1.11  10 years  parrello  Changed to use the default URL if an empty string is specified, for compatibilit...
SAPtutorial.pm  1.10  10 years  parrello  Fixed some errors in examples of ID types.
SFXlate.pm  1.119  11 years  parrello  Added "families_containing_peg".
SS.pm  1.13  10 years  parrello  More documentation cleanup.
SSU_rRNA_reps.pm  1.2  10 years  golsen  Update to the variable names (for more universal application).
SSserver.pm  1.17  10 years  parrello  Removed from the SAS distribution.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.9  10 years  dejongh  new methods
ScriptThing.pm  1.3  10 years  parrello  Added a column parameter to GetBatch.
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedEnv.pm  1.3  10 years  parrello  Added ANNOserver. Removed deprecated servers.
SeedHTML.pm  1.3  10 years  olson  More distro fixes.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
SeedUtils.pm  1.35  10 years  parrello  Changed boundaries_of to allow comma-delimited strings.
SeedV.pm  1.2  10 years  olson  remove Tracer ref
ServerScripts.pm  1.3  10 years  parrello  Updated the POD.
ServerThing.pm  1.51  10 years  parrello  *** empty log message ***
Sim.pm  1.14  10 years  olson  Distro fixups
SimFC.pm  1.3  11 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.8  11 years  parrello  Added a method to extract saved messages.
Subsystem.pm  1.147  10 years  overbeek  minor fix
TBLstuff.pm  1.2  11 years  overbeek  minor fixes
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.11  10 years  parrello  Fixed display glitch for pure white space.
TimeZone.pm  1.1  11 years  chenry  *** empty log message ***
ToCall.pm  1.11  11 years  gdpusch  Major rewrite to prevent already-found PEGs from being re-called by every stage ...
Tracer.pm  1.129  10 years  parrello  Fixed race condition while checking the emergency tracing file.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.12  10 years  dejongh  add many_except_gray and rgb_to_hex
WikiTools.pm  1.8  11 years  parrello  Fixed a glitch in list rendering.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.3  11 years  golsen  New super duper ala Peter T. Hooper paralog resolution interface.
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
compare_coding.pm  1.9  11 years  overbeek  gene calling stuff
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_homologs.pm  1.3  11 years  overbeek  update from Gary
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gd_tree_0.pm  1.5  10 years  golsen  Extensive reworking of color management.
gjoalign2html.pm  1.4  10 years  golsen  Fix problem with line wrap in the alignment. Change all #abc colors to #aabbcc f...
gjoalignandtree.pm  1.2  10 years  fangfang  fixed a small bug in representative_for_profile()
gjoalignment.pm  1.28  10 years  overbeek  mark as SAS component
gjocolorlib.pm  1.3  11 years  golsen  Added more named colors from X11, but these are almost certainly based on a diff...
gjolib.pm  1.3  10 years  olson  Add more modules to the SAS toolkit.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.19  10 years  golsen  Fixed bug introduced yesterday (a spurious newline).
gjoparseblast.pm  1.7  10 years  overbeek  add as SAS components
gjophylip.pm  1.2  10 years  golsen  Add and/or update routines to support bootstrapping and bootstrap consensus tree...
gjoseqlib.pm  1.17  10 years  golsen  Add new function for assessing similarity of aligned sequences. Fix a bug in pri...
gjostat.pm  1.1  10 years  golsen  Adding a library of useful statistical functions.
model.pm  1.34  10 years  dejongh  fix reference
proml.pm  1.9  10 years  golsen  Minor updates to SEED awareness.
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.12  10 years  fangfang  check if formatdb and blastall exist in $FIG_Config::ext_bin
selenoprotein_ref_seq.pm  1.5  10 years  golsen  Add some reference sequences and replace ; with @ in functions.
set_utilities.pm  1.3  10 years  overbeek  make SAS components
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.20  10 years  olson  Add more modules to the SAS toolkit.
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2010_0526
ALITRE.pm (dead) No revisions exist on rast_rel_2010_0526
ALITREserver.pm (dead) No revisions exist on rast_rel_2010_0526
AT.pm (dead) No revisions exist on rast_rel_2010_0526
ATserver.pm (dead) No revisions exist on rast_rel_2010_0526
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2010_0526
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2010_0526
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2010_0526
AliTreeSims.pm (dead) No revisions exist on rast_rel_2010_0526
AlignTree.pm (dead) No revisions exist on rast_rel_2010_0526
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2010_0526
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2010_0526
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2010_0526
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2010_0526
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2010_0526
BBasicLocation.pm (dead) No revisions exist on rast_rel_2010_0526
BerkTable.pm (dead) No revisions exist on rast_rel_2010_0526
Bin.pm (dead) No revisions exist on rast_rel_2010_0526
BinningReports.pm (dead) No revisions exist on rast_rel_2010_0526
Biochemistry.pm (dead) No revisions exist on rast_rel_2010_0526
BlankSVP.pm (dead) No revisions exist on rast_rel_2010_0526
BlastInterface.pm (dead) No revisions exist on rast_rel_2010_0526
Boolean.pm (dead) No revisions exist on rast_rel_2010_0526
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2010_0526
CallBlast.pm (dead) No revisions exist on rast_rel_2010_0526
CallByProjection.pm (dead) No revisions exist on rast_rel_2010_0526
CallScanner.pm (dead) No revisions exist on rast_rel_2010_0526
Category.pm (dead) No revisions exist on rast_rel_2010_0526
CloseGenomes.pm (dead) No revisions exist on rast_rel_2010_0526
CloseStrains.pm (dead) No revisions exist on rast_rel_2010_0526
ClusterPairs.pm (dead) No revisions exist on rast_rel_2010_0526
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2010_0526
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2010_0526
CommonCGI.pm (dead) No revisions exist on rast_rel_2010_0526
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2010_0526
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2010_0526
Correspondence.pm (dead) No revisions exist on rast_rel_2010_0526
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2010_0526
Corresponds.pm (dead) No revisions exist on rast_rel_2010_0526
CountTransactions.pm (dead) No revisions exist on rast_rel_2010_0526
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2010_0526
Dlits.pm (dead) No revisions exist on rast_rel_2010_0526
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2010_0526
EvalCom.pm (dead) No revisions exist on rast_rel_2010_0526
EvalCon.pm (dead) No revisions exist on rast_rel_2010_0526
EvalHelper.pm (dead) No revisions exist on rast_rel_2010_0526
ExpressionDir.pm (dead) No revisions exist on rast_rel_2010_0526
FBasicLocation.pm (dead) No revisions exist on rast_rel_2010_0526
FFB3.pm (dead) No revisions exist on rast_rel_2010_0526
FIG_Config.pm (dead) No revisions exist on rast_rel_2010_0526
FIG_Config.py (dead) No revisions exist on rast_rel_2010_0526
FQUtils.pm (dead) No revisions exist on rast_rel_2010_0526
FastA.pm (dead) No revisions exist on rast_rel_2010_0526
FastQ.pm (dead) No revisions exist on rast_rel_2010_0526
FigSubsystem.pm (dead) No revisions exist on rast_rel_2010_0526
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2010_0526
Find_RNAs.pm (dead) No revisions exist on rast_rel_2010_0526
FixTransactions.pm (dead) No revisions exist on rast_rel_2010_0526
GEO.pm (dead) No revisions exist on rast_rel_2010_0526
GPUtils.pm (dead) No revisions exist on rast_rel_2010_0526
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2010_0526
GenerateClusters.pm (dead) No revisions exist on rast_rel_2010_0526
GenomeChecker.pm (dead) No revisions exist on rast_rel_2010_0526
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2010_0526
GenomeSelector.pm (dead) No revisions exist on rast_rel_2010_0526
GenomeSet.spec (dead) No revisions exist on rast_rel_2010_0526
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2010_0526
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2010_0526
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2010_0526
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2010_0526
Hsp.pm (dead) No revisions exist on rast_rel_2010_0526
IC50.pm (dead) No revisions exist on rast_rel_2010_0526
IDclient.pm (dead) No revisions exist on rast_rel_2010_0526
IS_Data.pm (dead) No revisions exist on rast_rel_2010_0526
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2010_0526
KBASE.pm (dead) No revisions exist on rast_rel_2010_0526
KBIDUtils.pm (dead) No revisions exist on rast_rel_2010_0526
KBInvoke.pm (dead) No revisions exist on rast_rel_2010_0526
KBRpcContext.pm (dead) No revisions exist on rast_rel_2010_0526
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2010_0526
KmerClassifier.pm (dead) No revisions exist on rast_rel_2010_0526
KmerClient.pm (dead) No revisions exist on rast_rel_2010_0526
KmerDb.pm (dead) No revisions exist on rast_rel_2010_0526
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2010_0526
KmerMgr.pm (dead) No revisions exist on rast_rel_2010_0526
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2010_0526
Kmers2013.pm (dead) No revisions exist on rast_rel_2010_0526
LinksUI.pm (dead) No revisions exist on rast_rel_2010_0526
ListServerScripts.pm (dead) No revisions exist on rast_rel_2010_0526
MD5Computer.pm (dead) No revisions exist on rast_rel_2010_0526
MODELserv.pm (dead) No revisions exist on rast_rel_2010_0526
MODELserv_client.pm (dead) No revisions exist on rast_rel_2010_0526
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2010_0526
MapToRef.pm (dead) No revisions exist on rast_rel_2010_0526
MinimalTracer.pm (dead) No revisions exist on rast_rel_2010_0526
MissingRoles.pm (dead) No revisions exist on rast_rel_2010_0526
MoveAliases.pm (dead) No revisions exist on rast_rel_2010_0526
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2010_0526
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2010_0526
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2010_0526
P3Contigs.pm (dead) No revisions exist on rast_rel_2010_0526
P3DataAPI.pm (dead) No revisions exist on rast_rel_2010_0526
P3Sequences.pm (dead) No revisions exist on rast_rel_2010_0526
P3Signatures.pm (dead) No revisions exist on rast_rel_2010_0526
P3Utils.pm (dead) No revisions exist on rast_rel_2010_0526
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2010_0526
PG.pm (dead) No revisions exist on rast_rel_2010_0526
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2010_0526
PersistentSets.pm (dead) No revisions exist on rast_rel_2010_0526
Phage.pm (dead) No revisions exist on rast_rel_2010_0526
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2010_0526
Prodigal.pm (dead) No revisions exist on rast_rel_2010_0526
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2010_0526
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2010_0526
RASTlib.pm (dead) No revisions exist on rast_rel_2010_0526
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2010_0526
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2010_0526
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2010_0526
ReactionPath.pm (dead) No revisions exist on rast_rel_2010_0526
RepGenome.pm (dead) No revisions exist on rast_rel_2010_0526
RiboProtQC.pm (dead) No revisions exist on rast_rel_2010_0526
RoleParse.pm (dead) No revisions exist on rast_rel_2010_0526
RoleRule.pm (dead) No revisions exist on rast_rel_2010_0526
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2010_0526
SEED.spec (dead) No revisions exist on rast_rel_2010_0526
SEEDClient.pm (dead) No revisions exist on rast_rel_2010_0526
SEEDImpl.pm (dead) No revisions exist on rast_rel_2010_0526
SEEDServer.pm (dead) No revisions exist on rast_rel_2010_0526
SRAlib.pm (dead) No revisions exist on rast_rel_2010_0526
SUP.pm (dead) No revisions exist on rast_rel_2010_0526
SUPserver.pm (dead) No revisions exist on rast_rel_2010_0526
SampleDir.pm (dead) No revisions exist on rast_rel_2010_0526
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2010_0526
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2010_0526
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2010_0526
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2010_0526
ScriptUtils.pm (dead) No revisions exist on rast_rel_2010_0526
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2010_0526
SeedAware.pm (dead) No revisions exist on rast_rel_2010_0526
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2010_0526
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2010_0526
SeedSearch.pm (dead) No revisions exist on rast_rel_2010_0526
SeedURLs.pm (dead) No revisions exist on rast_rel_2010_0526
SeqStore.pm (dead) No revisions exist on rast_rel_2010_0526
ServComplex.pm (dead) No revisions exist on rast_rel_2010_0526
ServFIGfam.pm (dead) No revisions exist on rast_rel_2010_0526
ServFeature.pm (dead) No revisions exist on rast_rel_2010_0526
ServGenome.pm (dead) No revisions exist on rast_rel_2010_0526
ServIndex.pm (dead) No revisions exist on rast_rel_2010_0526
ServOTU.pm (dead) No revisions exist on rast_rel_2010_0526
ServReaction.pm (dead) No revisions exist on rast_rel_2010_0526
ServRole.pm (dead) No revisions exist on rast_rel_2010_0526
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2010_0526
ServicesUtils.pm (dead) No revisions exist on rast_rel_2010_0526
Signatures.pm (dead) No revisions exist on rast_rel_2010_0526
Sim2.pm (dead) No revisions exist on rast_rel_2010_0526
SimCompute.pm (dead) No revisions exist on rast_rel_2010_0526
SimsTable.pm (dead) No revisions exist on rast_rel_2010_0526
StrepRepeats.pm (dead) No revisions exist on rast_rel_2010_0526
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2010_0526
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2010_0526
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2010_0526
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2010_0526
TabFile.pm (dead) No revisions exist on rast_rel_2010_0526
TableCell.pm (dead) No revisions exist on rast_rel_2010_0526
TaxUtils.pm (dead) No revisions exist on rast_rel_2010_0526
TetraMap.pm (dead) No revisions exist on rast_rel_2010_0526
TetraProfile.pm (dead) No revisions exist on rast_rel_2010_0526
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2010_0526
TraceObject.pm (dead) No revisions exist on rast_rel_2010_0526
TreeFC.pm (dead) No revisions exist on rast_rel_2010_0526
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2010_0526
UpdateServer.pm (dead) No revisions exist on rast_rel_2010_0526
WriteEMBL.pm (dead) No revisions exist on rast_rel_2010_0526
WriteGenbank.pm (dead) No revisions exist on rast_rel_2010_0526
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2010_0526
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2010_0526
crispr.pm (dead) No revisions exist on rast_rel_2010_0526
ffxtree.pm (dead) No revisions exist on rast_rel_2010_0526
find_tRNAs.pm (dead) No revisions exist on rast_rel_2010_0526
genome_frequencies.pm (dead) No revisions exist on rast_rel_2010_0526
gjoavllib.pm (dead) No revisions exist on rast_rel_2010_0526
gjocluster.pm (dead) No revisions exist on rast_rel_2010_0526
gjocodonlib.pm (dead) No revisions exist on rast_rel_2010_0526
gjocontigmap.pm (dead) No revisions exist on rast_rel_2010_0526
gjocontigs.pm (dead) No revisions exist on rast_rel_2010_0526
gjogenbank.pm (dead) No revisions exist on rast_rel_2010_0526
gjogff.pm (dead) No revisions exist on rast_rel_2010_0526
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2010_0526
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2010_0526
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2010_0526
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2010_0526
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2010_0526
match_to_axes.pm (dead) No revisions exist on rast_rel_2010_0526
merge_families.pl (dead) No revisions exist on rast_rel_2010_0526
overlap_resolution.pm (dead) No revisions exist on rast_rel_2010_0526
pubmed.tt (dead) No revisions exist on rast_rel_2010_0526

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