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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
ACHserver.pm  1.5  11 years  disz  FIxed bad run_query
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.9  11 years  parrello  Fixed the pattern for CMR IDs.
AnnoClearinghouse.pm  1.44  11 years  wilke  Modified sql query to ? syntax
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.19  10 years  parrello  Updated to Sapling Server for Berkeley.
BinarySearch.pm  1.1  13 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
CO.pm  1.2  10 years  parrello  Fixed some documentation errors.
COPYING.TXT  1.1  14 years  olson  add license file
COserver.pm  1.3  11 years  olson  server fixes
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  11 years  overbeek  new Contigs.pm and compare_coding.pm
DBKernel.pm  1.60  11 years  parrello  Removed connect_cached.
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.17  11 years  parrello  Fixed some bad links.
DocUtils.pm  1.18  10 years  parrello  Added documentation functions to the Sapling server.
FC.pm  1.19  10 years  parrello  Converted co-occurrence server to new technology.
FF.pm  1.32  11 years  arodri7  replaced backticks for reading files
FFs.pm  1.46  11 years  paczian  fixed rast figfam display
FFserver.pm  1.19  10 years  olson  increase request size in non-blast case so we don't drown in overhead.
FIG.pm  1.804  10 years  olson  Add rewrite-loop breaking to the role rewrite process.
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  11 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.17  10 years  olson  Support for Seedviewer Subsystems.pm speedups.
FIGMODEL.pm  1.36  10 years  devoid  Added functions get_role_id, get_role_name, deprecate_role for converting functi...
FIGMODELObject.pm  1.3  11 years  chenry  *** empty log message ***
FIGMODELTable.pm  1.10  10 years  chenry  Added html_print function to simplify the printing of FIGMODELTables in webpages...
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.54  10 years  olson  Optimize to_structured_english.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.92  10 years  olson  Support for Seedviewer Subsystems.pm speedups.
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.24  11 years  overbeek  force frameshifts to be of longer chunks
FigFam.pm  1.78  11 years  arodri7  changed to check if is_deleted_fid in sub new
FigFams.pm  1.56  11 years  overbeek  fixes to support Kmer analysis
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.10  10 years  chenry  *** empty log message ***
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.5  10 years  jared  added update_path
HTML.pm  1.130  11 years  arodri7  added links to set_prot_links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
JulianDay.pm  1.1  11 years  chenry  *** empty log message ***
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
Kmers.pm  1.15  10 years  olson  Add assign_functions_to_prot_set. Use ProtSims::blastP instead of blast for prot...
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.12  11 years  parrello  Removed POD stuff.
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
MgRastSims.pm  1.1  10 years  redwards  a new package for getting sims for the mg-rast
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.4  11 years  olson  update to new metadata standard
NewGenome.pm  1.80  10 years  parrello  Protected a "new FIG" in open code with an eval. THIS MUST BE FIXED.
Observation.pm  1.82  10 years  paczian  fixed hit and query length (cannot be null)
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.15  10 years  overbeek  switch from clustalw to muscle
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
ParalogResolution.pm  1.5  11 years  golsen  Modifications to support line-drawing character set in tree printer plots.
ParseDate.pm  1.1  11 years  chenry  *** empty log message ***
PartitionSeqs.pm  1.3  11 years  overbeek  return either scalar or list
PickFeatureSet.pm  1.2  11 years  overbeek  add .html to HTML files
PinnedRegions.pm  1.28  10 years  paczian  added location for artificial features
ProtFamLite.pm  1.2  11 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  11 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  11 years  arodri7  added functions and made functions work
ProtSims.pm  1.7  10 years  overbeek  condensing sets of hits against a sequence
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SAP.pm  1.16  10 years  parrello  Added "genes_in_region" method.
SAPserver.pm  1.8  10 years  parrello  Changed to allow specification of 'localhost" for the server URL. When this is d...
SAPtutorial.pm  1.7  10 years  parrello  Converted to use leading "-" in parameters.
SFXlate.pm  1.119  10 years  parrello  Added "families_containing_peg".
SS.pm  1.1  10 years  parrello  Converted subsystem server to new technology.
SSU_rRNA_reps.pm  1.1  11 years  overbeek  fixes to support search for rRNAs
SSserver.pm  1.10  10 years  parrello  Converted subsystem server to new technology.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.8  11 years  parrello  Added a line to suppress spurious warnings.
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
SeedUtils.pm  1.8  10 years  parrello  Added "verify_dir".
ServerThing.pm  1.7  10 years  parrello  Fixed CSS link.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SimFC.pm  1.3  11 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.8  11 years  parrello  Added a method to extract saved messages.
Subsystem.pm  1.145  10 years  redwards  moving error messages from STDOUT to STDERR
TBLstuff.pm  1.2  11 years  overbeek  minor fixes
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.10  11 years  parrello  Added new functions to support the seed viewer debug console.
TimeZone.pm  1.1  11 years  chenry  *** empty log message ***
ToCall.pm  1.11  11 years  gdpusch  Major rewrite to prevent already-found PEGs from being re-called by every stage ...
Tracer.pm  1.124  10 years  parrello  Added ability to turn off automatic CGI parm trace in ETracing method.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.11  10 years  devoid  Added functions for converting colors from RGB values to HSL values.
WikiTools.pm  1.8  11 years  parrello  Fixed a glitch in list rendering.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.3  11 years  golsen  New super duper ala Peter T. Hooper paralog resolution interface.
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
compare_coding.pm  1.9  11 years  overbeek  gene calling stuff
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_homologs.pm  1.3  11 years  overbeek  update from Gary
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gd_tree_0.pm  1.2  11 years  golsen  Add PNG format trees to fid_checked.cgi. Add support elsewhere. Some code clea...
gjoalign2html.pm  1.4  10 years  golsen  Fix problem with line wrap in the alignment. Change all #abc colors to #aabbcc f...
gjoalignment.pm  1.27  10 years  golsen  Add and/or update routines to support bootstrapping and bootstrap consensus tree...
gjocolorlib.pm  1.3  11 years  golsen  Added more named colors from X11, but these are almost certainly based on a diff...
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.16  10 years  golsen  Add ability to put internal node labels in printer plot trees. (requires dy >= 2...
gjoparseblast.pm  1.6  11 years  golsen  Fix to bug that caused failure in reading alignments with an entire row of gaps....
gjophylip.pm  1.2  10 years  golsen  Add and/or update routines to support bootstrapping and bootstrap consensus tree...
gjoseqlib.pm  1.15  11 years  golsen  Improve the comments and descriptions of functions.
model.pm  1.32  11 years  parrello  Fixed a bunch of compiler warnings.
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.18  11 years  parrello  Added tracing support.
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2009_0925
ACH.pm (dead) No revisions exist on rast_rel_2009_0925
ALITRE.pm (dead) No revisions exist on rast_rel_2009_0925
ALITREserver.pm (dead) No revisions exist on rast_rel_2009_0925
ANNO.pm (dead) No revisions exist on rast_rel_2009_0925
ANNOserver.pm (dead) No revisions exist on rast_rel_2009_0925
AT.pm (dead) No revisions exist on rast_rel_2009_0925
ATserver.pm (dead) No revisions exist on rast_rel_2009_0925
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2009_0925
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2009_0925
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2009_0925
AliTreeSims.pm (dead) No revisions exist on rast_rel_2009_0925
AlignTree.pm (dead) No revisions exist on rast_rel_2009_0925
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2009_0925
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2009_0925
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2009_0925
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2009_0925
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2009_0925
BBasicLocation.pm (dead) No revisions exist on rast_rel_2009_0925
BerkTable.pm (dead) No revisions exist on rast_rel_2009_0925
Bin.pm (dead) No revisions exist on rast_rel_2009_0925
BinningReports.pm (dead) No revisions exist on rast_rel_2009_0925
Biochemistry.pm (dead) No revisions exist on rast_rel_2009_0925
BlankSVP.pm (dead) No revisions exist on rast_rel_2009_0925
BlastInterface.pm (dead) No revisions exist on rast_rel_2009_0925
Boolean.pm (dead) No revisions exist on rast_rel_2009_0925
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2009_0925
CallBlast.pm (dead) No revisions exist on rast_rel_2009_0925
CallByProjection.pm (dead) No revisions exist on rast_rel_2009_0925
CallScanner.pm (dead) No revisions exist on rast_rel_2009_0925
Category.pm (dead) No revisions exist on rast_rel_2009_0925
ClientThing.pm (dead) No revisions exist on rast_rel_2009_0925
CloseGenomes.pm (dead) No revisions exist on rast_rel_2009_0925
CloseStrains.pm (dead) No revisions exist on rast_rel_2009_0925
ClusterPairs.pm (dead) No revisions exist on rast_rel_2009_0925
Clustering.pm (dead) No revisions exist on rast_rel_2009_0925
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2009_0925
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2009_0925
CommonCGI.pm (dead) No revisions exist on rast_rel_2009_0925
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2009_0925
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2009_0925
Correspondence.pm (dead) No revisions exist on rast_rel_2009_0925
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2009_0925
Corresponds.pm (dead) No revisions exist on rast_rel_2009_0925
CountTransactions.pm (dead) No revisions exist on rast_rel_2009_0925
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2009_0925
Dlits.pm (dead) No revisions exist on rast_rel_2009_0925
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2009_0925
ErrorMessage.pm (dead) No revisions exist on rast_rel_2009_0925
EvalCom.pm (dead) No revisions exist on rast_rel_2009_0925
EvalCon.pm (dead) No revisions exist on rast_rel_2009_0925
EvalHelper.pm (dead) No revisions exist on rast_rel_2009_0925
ExpressionDir.pm (dead) No revisions exist on rast_rel_2009_0925
FBAMODEL.pm (dead) No revisions exist on rast_rel_2009_0925
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2009_0925
FBasicLocation.pm (dead) No revisions exist on rast_rel_2009_0925
FFB3.pm (dead) No revisions exist on rast_rel_2009_0925
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2009_0925
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2009_0925
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2009_0925
FIG_Config.pm (dead) No revisions exist on rast_rel_2009_0925
FIG_Config.py (dead) No revisions exist on rast_rel_2009_0925
FQUtils.pm (dead) No revisions exist on rast_rel_2009_0925
FastA.pm (dead) No revisions exist on rast_rel_2009_0925
FastQ.pm (dead) No revisions exist on rast_rel_2009_0925
FigSubsystem.pm (dead) No revisions exist on rast_rel_2009_0925
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2009_0925
Find_RNAs.pm (dead) No revisions exist on rast_rel_2009_0925
FixTransactions.pm (dead) No revisions exist on rast_rel_2009_0925
GEO.pm (dead) No revisions exist on rast_rel_2009_0925
GPUtils.pm (dead) No revisions exist on rast_rel_2009_0925
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2009_0925
GenerateClusters.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeChecker.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeSelector.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeSet.spec (dead) No revisions exist on rast_rel_2009_0925
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2009_0925
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2009_0925
Hsp.pm (dead) No revisions exist on rast_rel_2009_0925
IC50.pm (dead) No revisions exist on rast_rel_2009_0925
IDclient.pm (dead) No revisions exist on rast_rel_2009_0925
IS_Data.pm (dead) No revisions exist on rast_rel_2009_0925
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2009_0925
KBASE.pm (dead) No revisions exist on rast_rel_2009_0925
KBIDUtils.pm (dead) No revisions exist on rast_rel_2009_0925
KBInvoke.pm (dead) No revisions exist on rast_rel_2009_0925
KBRpcContext.pm (dead) No revisions exist on rast_rel_2009_0925
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2009_0925
KmerClassifier.pm (dead) No revisions exist on rast_rel_2009_0925
KmerClient.pm (dead) No revisions exist on rast_rel_2009_0925
KmerDb.pm (dead) No revisions exist on rast_rel_2009_0925
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2009_0925
KmerMgr.pm (dead) No revisions exist on rast_rel_2009_0925
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2009_0925
Kmers2013.pm (dead) No revisions exist on rast_rel_2009_0925
KmersOld.pm (dead) No revisions exist on rast_rel_2009_0925
LinksUI.pm (dead) No revisions exist on rast_rel_2009_0925
ListServerScripts.pm (dead) No revisions exist on rast_rel_2009_0925
MD5Computer.pm (dead) No revisions exist on rast_rel_2009_0925
MODELserv.pm (dead) No revisions exist on rast_rel_2009_0925
MODELserv_client.pm (dead) No revisions exist on rast_rel_2009_0925
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2009_0925
MapToRef.pm (dead) No revisions exist on rast_rel_2009_0925
MinimalTracer.pm (dead) No revisions exist on rast_rel_2009_0925
MissingRoles.pm (dead) No revisions exist on rast_rel_2009_0925
MoveAliases.pm (dead) No revisions exist on rast_rel_2009_0925
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2009_0925
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2009_0925
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2009_0925
P3Contigs.pm (dead) No revisions exist on rast_rel_2009_0925
P3DataAPI.pm (dead) No revisions exist on rast_rel_2009_0925
P3Sequences.pm (dead) No revisions exist on rast_rel_2009_0925
P3Signatures.pm (dead) No revisions exist on rast_rel_2009_0925
P3Utils.pm (dead) No revisions exist on rast_rel_2009_0925
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2009_0925
PG.pm (dead) No revisions exist on rast_rel_2009_0925
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2009_0925
PersistentSets.pm (dead) No revisions exist on rast_rel_2009_0925
Phage.pm (dead) No revisions exist on rast_rel_2009_0925
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2009_0925
Prodigal.pm (dead) No revisions exist on rast_rel_2009_0925
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2009_0925
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2009_0925
RAST_submission.pm (dead) No revisions exist on rast_rel_2009_0925
RASTlib.pm (dead) No revisions exist on rast_rel_2009_0925
RASTserver.pm (dead) No revisions exist on rast_rel_2009_0925
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2009_0925
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_0925
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_0925
ReactionPath.pm (dead) No revisions exist on rast_rel_2009_0925
RepGenome.pm (dead) No revisions exist on rast_rel_2009_0925
RiboProtQC.pm (dead) No revisions exist on rast_rel_2009_0925
RoleParse.pm (dead) No revisions exist on rast_rel_2009_0925
RoleRule.pm (dead) No revisions exist on rast_rel_2009_0925
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2009_0925
SEED.spec (dead) No revisions exist on rast_rel_2009_0925
SEEDClient.pm (dead) No revisions exist on rast_rel_2009_0925
SEEDImpl.pm (dead) No revisions exist on rast_rel_2009_0925
SEEDServer.pm (dead) No revisions exist on rast_rel_2009_0925
SRAlib.pm (dead) No revisions exist on rast_rel_2009_0925
SUP.pm (dead) No revisions exist on rast_rel_2009_0925
SUPserver.pm (dead) No revisions exist on rast_rel_2009_0925
SampleDir.pm (dead) No revisions exist on rast_rel_2009_0925
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2009_0925
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2009_0925
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2009_0925
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2009_0925
ScriptThing.pm (dead) No revisions exist on rast_rel_2009_0925
ScriptUtils.pm (dead) No revisions exist on rast_rel_2009_0925
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2009_0925
SeedAware.pm (dead) No revisions exist on rast_rel_2009_0925
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2009_0925
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2009_0925
SeedEnv.pm (dead) No revisions exist on rast_rel_2009_0925
SeedHTML.pm (dead) No revisions exist on rast_rel_2009_0925
SeedSearch.pm (dead) No revisions exist on rast_rel_2009_0925
SeedURLs.pm (dead) No revisions exist on rast_rel_2009_0925
SeedV.pm (dead) No revisions exist on rast_rel_2009_0925
SeqStore.pm (dead) No revisions exist on rast_rel_2009_0925
ServComplex.pm (dead) No revisions exist on rast_rel_2009_0925
ServFIGfam.pm (dead) No revisions exist on rast_rel_2009_0925
ServFeature.pm (dead) No revisions exist on rast_rel_2009_0925
ServGenome.pm (dead) No revisions exist on rast_rel_2009_0925
ServIndex.pm (dead) No revisions exist on rast_rel_2009_0925
ServOTU.pm (dead) No revisions exist on rast_rel_2009_0925
ServReaction.pm (dead) No revisions exist on rast_rel_2009_0925
ServRole.pm (dead) No revisions exist on rast_rel_2009_0925
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2009_0925
ServerScripts.pm (dead) No revisions exist on rast_rel_2009_0925
ServicesUtils.pm (dead) No revisions exist on rast_rel_2009_0925
Signatures.pm (dead) No revisions exist on rast_rel_2009_0925
Sim2.pm (dead) No revisions exist on rast_rel_2009_0925
SimCompute.pm (dead) No revisions exist on rast_rel_2009_0925
SimsTable.pm (dead) No revisions exist on rast_rel_2009_0925
StrepRepeats.pm (dead) No revisions exist on rast_rel_2009_0925
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2009_0925
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2009_0925
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2009_0925
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2009_0925
TabFile.pm (dead) No revisions exist on rast_rel_2009_0925
TableCell.pm (dead) No revisions exist on rast_rel_2009_0925
TaxUtils.pm (dead) No revisions exist on rast_rel_2009_0925
TetraMap.pm (dead) No revisions exist on rast_rel_2009_0925
TetraProfile.pm (dead) No revisions exist on rast_rel_2009_0925
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2009_0925
TraceObject.pm (dead) No revisions exist on rast_rel_2009_0925
TreeFC.pm (dead) No revisions exist on rast_rel_2009_0925
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2009_0925
UpdateServer.pm (dead) No revisions exist on rast_rel_2009_0925
WriteEMBL.pm (dead) No revisions exist on rast_rel_2009_0925
WriteGenbank.pm (dead) No revisions exist on rast_rel_2009_0925
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2009_0925
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2009_0925
crispr.pm (dead) No revisions exist on rast_rel_2009_0925
ffxtree.pm (dead) No revisions exist on rast_rel_2009_0925
find_tRNAs.pm (dead) No revisions exist on rast_rel_2009_0925
genome_frequencies.pm (dead) No revisions exist on rast_rel_2009_0925
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2009_0925
gjoavllib.pm (dead) No revisions exist on rast_rel_2009_0925
gjocluster.pm (dead) No revisions exist on rast_rel_2009_0925
gjocodonlib.pm (dead) No revisions exist on rast_rel_2009_0925
gjocontigmap.pm (dead) No revisions exist on rast_rel_2009_0925
gjocontigs.pm (dead) No revisions exist on rast_rel_2009_0925
gjogenbank.pm (dead) No revisions exist on rast_rel_2009_0925
gjogff.pm (dead) No revisions exist on rast_rel_2009_0925
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2009_0925
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2009_0925
gjostat.pm (dead) No revisions exist on rast_rel_2009_0925
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2009_0925
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2009_0925
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2009_0925
match_to_axes.pm (dead) No revisions exist on rast_rel_2009_0925
merge_families.pl (dead) No revisions exist on rast_rel_2009_0925
overlap_resolution.pm (dead) No revisions exist on rast_rel_2009_0925
pubmed.tt (dead) No revisions exist on rast_rel_2009_0925

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