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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
ACHserver.pm  1.5  10 years  disz  FIxed bad run_query
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.9  10 years  parrello  Fixed the pattern for CMR IDs.
AnnoClearinghouse.pm  1.44  10 years  wilke  Modified sql query to ? syntax
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
COserver.pm  1.3  10 years  olson  server fixes
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  10 years  overbeek  new Contigs.pm and compare_coding.pm
DBKernel.pm  1.60  10 years  parrello  Removed connect_cached.
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.17  10 years  parrello  Fixed some bad links.
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FC.pm  1.14  10 years  overbeek  updates to co_occurrence rtns
FF.pm  1.32  10 years  arodri7  replaced backticks for reading files
FFs.pm  1.46  10 years  paczian  fixed rast figfam display
FFserver.pm  1.17  10 years  olson  fix call_genes
FIG.pm  1.791  10 years  olson  Make function_of() use sql parameters Sorted returns from keep a sort on the id...
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  10 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.16  10 years  paczian  added preference option for annotators to display aux roles on the annotation pa...
FIGMODEL.pm  1.21  10 years  chenry  *** empty log message ***
FIGMODELObject.pm  1.3  10 years  chenry  *** empty log message ***
FIGMODELTable.pm  1.6  10 years  chenry  *** empty log message ***
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.53  10 years  parrello  Fixed run-time warning in GetHopeReactions.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.90  10 years  paczian  fixed eol the right way in load_deleted_features_hash
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.24  10 years  overbeek  force frameshifts to be of longer chunks
FigFam.pm  1.78  10 years  arodri7  changed to check if is_deleted_fid in sub new
FigFams.pm  1.56  10 years  overbeek  fixes to support Kmer analysis
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.9  10 years  chenry  *** empty log message ***
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  11 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  11 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  11 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.4  10 years  parrello  Fixed an error in the POD documentation. Fixed a compiler warning.
HTML.pm  1.130  10 years  arodri7  added links to set_prot_links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
JulianDay.pm  1.1  10 years  chenry  *** empty log message ***
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
Kmers.pm  1.14  10 years  overbeek  minor fixes
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.12  10 years  parrello  Removed POD stuff.
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.4  10 years  olson  update to new metadata standard
NewGenome.pm  1.79  10 years  gdpusch  Fixed a bug in overlap removal.
Observation.pm  1.80  10 years  arodri7  added column to FIGfam table
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  12 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
ParalogResolution.pm  1.5  10 years  golsen  Modifications to support line-drawing character set in tree printer plots.
ParseDate.pm  1.1  10 years  chenry  *** empty log message ***
PartitionSeqs.pm  1.3  10 years  overbeek  return either scalar or list
PickFeatureSet.pm  1.2  10 years  overbeek  add .html to HTML files
PinnedRegions.pm  1.21  10 years  dsouza  Added sort display order of regions by similarity of pin to input peg
ProtFamLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  10 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  10 years  arodri7  added functions and made functions work
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SAP.pm  1.5  10 years  parrello  Additional functionality for sapling server.
SAPserver.pm  1.3  10 years  parrello  Additional functionality for sapling server.
SFXlate.pm  1.118  10 years  parrello  Changed the constructor to allow better interoperability with the other ERDB dat...
SSU_rRNA_reps.pm  1.1  11 years  overbeek  fixes to support search for rRNAs
SSserver.pm  1.7  10 years  disz  pegs_implementing_roles
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.8  10 years  parrello  Added a line to suppress spurious warnings.
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
SeedUtils.pm  1.2  10 years  parrello  Additional functionality for sapling server.
ServerThing.pm  1.2  10 years  parrello  Additional functionality for sapling server.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SimFC.pm  1.3  10 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.8  10 years  parrello  Added a method to extract saved messages.
Subsystem.pm  1.144  11 years  parrello  Added a new method-- all_functions-- that allows SproutSubsys to retrieve role i...
TBLstuff.pm  1.2  10 years  overbeek  minor fixes
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.10  10 years  parrello  Added new functions to support the seed viewer debug console.
TimeZone.pm  1.1  10 years  chenry  *** empty log message ***
ToCall.pm  1.11  10 years  gdpusch  Major rewrite to prevent already-found PEGs from being re-called by every stage ...
Tracer.pm  1.122  10 years  parrello  Added Google Analytics.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.8  10 years  paczian  added method color_to_rgb to convert html color names to rgb values
WikiTools.pm  1.8  10 years  parrello  Fixed a glitch in list rendering.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.3  10 years  golsen  New super duper ala Peter T. Hooper paralog resolution interface.
collect_related_sequences.pm  1.5  12 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
compare_coding.pm  1.9  10 years  overbeek  gene calling stuff
display_related_genomes.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_homologs.pm  1.3  11 years  overbeek  update from Gary
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gd_tree_0.pm  1.2  10 years  golsen  Add PNG format trees to fid_checked.cgi. Add support elsewhere. Some code clea...
gjoalign2html.pm  1.3  10 years  golsen  Add PNG format trees to fid_checked.cgi. Add support elsewhere. Some code clea...
gjoalignment.pm  1.26  10 years  golsen  Changes mostly in add_to_alignment.
gjocolorlib.pm  1.3  10 years  golsen  Added more named colors from X11, but these are almost certainly based on a diff...
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.14  10 years  golsen  Improved tree printer-plot graphics. Total redesign.
gjoparseblast.pm  1.6  10 years  golsen  Fix to bug that caused failure in reading alignments with an entire row of gaps....
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.15  10 years  golsen  Improve the comments and descriptions of functions.
model.pm  1.32  10 years  parrello  Fixed a bunch of compiler warnings.
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  11 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  12 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  11 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.18  10 years  parrello  Added tracing support.
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2009_07_09
ACH.pm (dead) No revisions exist on rast_rel_2009_07_09
ALITRE.pm (dead) No revisions exist on rast_rel_2009_07_09
ALITREserver.pm (dead) No revisions exist on rast_rel_2009_07_09
ANNO.pm (dead) No revisions exist on rast_rel_2009_07_09
ANNOserver.pm (dead) No revisions exist on rast_rel_2009_07_09
AT.pm (dead) No revisions exist on rast_rel_2009_07_09
ATserver.pm (dead) No revisions exist on rast_rel_2009_07_09
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2009_07_09
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2009_07_09
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2009_07_09
AliTreeSims.pm (dead) No revisions exist on rast_rel_2009_07_09
AlignTree.pm (dead) No revisions exist on rast_rel_2009_07_09
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2009_07_09
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2009_07_09
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2009_07_09
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2009_07_09
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2009_07_09
BBasicLocation.pm (dead) No revisions exist on rast_rel_2009_07_09
BerkTable.pm (dead) No revisions exist on rast_rel_2009_07_09
Bin.pm (dead) No revisions exist on rast_rel_2009_07_09
BinningReports.pm (dead) No revisions exist on rast_rel_2009_07_09
Biochemistry.pm (dead) No revisions exist on rast_rel_2009_07_09
BlankSVP.pm (dead) No revisions exist on rast_rel_2009_07_09
BlastInterface.pm (dead) No revisions exist on rast_rel_2009_07_09
Boolean.pm (dead) No revisions exist on rast_rel_2009_07_09
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2009_07_09
CO.pm (dead) No revisions exist on rast_rel_2009_07_09
CallBlast.pm (dead) No revisions exist on rast_rel_2009_07_09
CallByProjection.pm (dead) No revisions exist on rast_rel_2009_07_09
CallScanner.pm (dead) No revisions exist on rast_rel_2009_07_09
Category.pm (dead) No revisions exist on rast_rel_2009_07_09
ClientThing.pm (dead) No revisions exist on rast_rel_2009_07_09
CloseGenomes.pm (dead) No revisions exist on rast_rel_2009_07_09
CloseStrains.pm (dead) No revisions exist on rast_rel_2009_07_09
ClusterPairs.pm (dead) No revisions exist on rast_rel_2009_07_09
Clustering.pm (dead) No revisions exist on rast_rel_2009_07_09
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2009_07_09
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2009_07_09
CommonCGI.pm (dead) No revisions exist on rast_rel_2009_07_09
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2009_07_09
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2009_07_09
Correspondence.pm (dead) No revisions exist on rast_rel_2009_07_09
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2009_07_09
Corresponds.pm (dead) No revisions exist on rast_rel_2009_07_09
CountTransactions.pm (dead) No revisions exist on rast_rel_2009_07_09
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2009_07_09
Dlits.pm (dead) No revisions exist on rast_rel_2009_07_09
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2009_07_09
ErrorMessage.pm (dead) No revisions exist on rast_rel_2009_07_09
EvalCom.pm (dead) No revisions exist on rast_rel_2009_07_09
EvalCon.pm (dead) No revisions exist on rast_rel_2009_07_09
EvalHelper.pm (dead) No revisions exist on rast_rel_2009_07_09
ExpressionDir.pm (dead) No revisions exist on rast_rel_2009_07_09
FBAMODEL.pm (dead) No revisions exist on rast_rel_2009_07_09
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2009_07_09
FBasicLocation.pm (dead) No revisions exist on rast_rel_2009_07_09
FFB3.pm (dead) No revisions exist on rast_rel_2009_07_09
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2009_07_09
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2009_07_09
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2009_07_09
FIG_Config.pm (dead) No revisions exist on rast_rel_2009_07_09
FIG_Config.py (dead) No revisions exist on rast_rel_2009_07_09
FQUtils.pm (dead) No revisions exist on rast_rel_2009_07_09
FastA.pm (dead) No revisions exist on rast_rel_2009_07_09
FastQ.pm (dead) No revisions exist on rast_rel_2009_07_09
FigSubsystem.pm (dead) No revisions exist on rast_rel_2009_07_09
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2009_07_09
Find_RNAs.pm (dead) No revisions exist on rast_rel_2009_07_09
FixTransactions.pm (dead) No revisions exist on rast_rel_2009_07_09
GEO.pm (dead) No revisions exist on rast_rel_2009_07_09
GPUtils.pm (dead) No revisions exist on rast_rel_2009_07_09
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2009_07_09
GenerateClusters.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeChecker.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeSelector.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeSet.spec (dead) No revisions exist on rast_rel_2009_07_09
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2009_07_09
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2009_07_09
Hsp.pm (dead) No revisions exist on rast_rel_2009_07_09
IC50.pm (dead) No revisions exist on rast_rel_2009_07_09
IDclient.pm (dead) No revisions exist on rast_rel_2009_07_09
IS_Data.pm (dead) No revisions exist on rast_rel_2009_07_09
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2009_07_09
KBASE.pm (dead) No revisions exist on rast_rel_2009_07_09
KBIDUtils.pm (dead) No revisions exist on rast_rel_2009_07_09
KBInvoke.pm (dead) No revisions exist on rast_rel_2009_07_09
KBRpcContext.pm (dead) No revisions exist on rast_rel_2009_07_09
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2009_07_09
KmerClassifier.pm (dead) No revisions exist on rast_rel_2009_07_09
KmerClient.pm (dead) No revisions exist on rast_rel_2009_07_09
KmerDb.pm (dead) No revisions exist on rast_rel_2009_07_09
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2009_07_09
KmerMgr.pm (dead) No revisions exist on rast_rel_2009_07_09
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2009_07_09
Kmers2013.pm (dead) No revisions exist on rast_rel_2009_07_09
KmersOld.pm (dead) No revisions exist on rast_rel_2009_07_09
LinksUI.pm (dead) No revisions exist on rast_rel_2009_07_09
ListServerScripts.pm (dead) No revisions exist on rast_rel_2009_07_09
MD5Computer.pm (dead) No revisions exist on rast_rel_2009_07_09
MODELserv.pm (dead) No revisions exist on rast_rel_2009_07_09
MODELserv_client.pm (dead) No revisions exist on rast_rel_2009_07_09
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2009_07_09
MapToRef.pm (dead) No revisions exist on rast_rel_2009_07_09
MgRastSims.pm (dead) No revisions exist on rast_rel_2009_07_09
MinimalTracer.pm (dead) No revisions exist on rast_rel_2009_07_09
MissingRoles.pm (dead) No revisions exist on rast_rel_2009_07_09
MoveAliases.pm (dead) No revisions exist on rast_rel_2009_07_09
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2009_07_09
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2009_07_09
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2009_07_09
P3Contigs.pm (dead) No revisions exist on rast_rel_2009_07_09
P3DataAPI.pm (dead) No revisions exist on rast_rel_2009_07_09
P3Sequences.pm (dead) No revisions exist on rast_rel_2009_07_09
P3Signatures.pm (dead) No revisions exist on rast_rel_2009_07_09
P3Utils.pm (dead) No revisions exist on rast_rel_2009_07_09
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2009_07_09
PG.pm (dead) No revisions exist on rast_rel_2009_07_09
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2009_07_09
PersistentSets.pm (dead) No revisions exist on rast_rel_2009_07_09
Phage.pm (dead) No revisions exist on rast_rel_2009_07_09
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2009_07_09
Prodigal.pm (dead) No revisions exist on rast_rel_2009_07_09
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2009_07_09
ProtSims.pm (dead) No revisions exist on rast_rel_2009_07_09
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2009_07_09
RAST_submission.pm (dead) No revisions exist on rast_rel_2009_07_09
RASTlib.pm (dead) No revisions exist on rast_rel_2009_07_09
RASTserver.pm (dead) No revisions exist on rast_rel_2009_07_09
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2009_07_09
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_07_09
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_07_09
ReactionPath.pm (dead) No revisions exist on rast_rel_2009_07_09
RepGenome.pm (dead) No revisions exist on rast_rel_2009_07_09
RiboProtQC.pm (dead) No revisions exist on rast_rel_2009_07_09
RoleParse.pm (dead) No revisions exist on rast_rel_2009_07_09
RoleRule.pm (dead) No revisions exist on rast_rel_2009_07_09
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2009_07_09
SAPtutorial.pm (dead) No revisions exist on rast_rel_2009_07_09
SEED.spec (dead) No revisions exist on rast_rel_2009_07_09
SEEDClient.pm (dead) No revisions exist on rast_rel_2009_07_09
SEEDImpl.pm (dead) No revisions exist on rast_rel_2009_07_09
SEEDServer.pm (dead) No revisions exist on rast_rel_2009_07_09
SRAlib.pm (dead) No revisions exist on rast_rel_2009_07_09
SS.pm (dead) No revisions exist on rast_rel_2009_07_09
SUP.pm (dead) No revisions exist on rast_rel_2009_07_09
SUPserver.pm (dead) No revisions exist on rast_rel_2009_07_09
SampleDir.pm (dead) No revisions exist on rast_rel_2009_07_09
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2009_07_09
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2009_07_09
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2009_07_09
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2009_07_09
ScriptThing.pm (dead) No revisions exist on rast_rel_2009_07_09
ScriptUtils.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedAware.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedEnv.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedHTML.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedSearch.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedURLs.pm (dead) No revisions exist on rast_rel_2009_07_09
SeedV.pm (dead) No revisions exist on rast_rel_2009_07_09
SeqStore.pm (dead) No revisions exist on rast_rel_2009_07_09
ServComplex.pm (dead) No revisions exist on rast_rel_2009_07_09
ServFIGfam.pm (dead) No revisions exist on rast_rel_2009_07_09
ServFeature.pm (dead) No revisions exist on rast_rel_2009_07_09
ServGenome.pm (dead) No revisions exist on rast_rel_2009_07_09
ServIndex.pm (dead) No revisions exist on rast_rel_2009_07_09
ServOTU.pm (dead) No revisions exist on rast_rel_2009_07_09
ServReaction.pm (dead) No revisions exist on rast_rel_2009_07_09
ServRole.pm (dead) No revisions exist on rast_rel_2009_07_09
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2009_07_09
ServerScripts.pm (dead) No revisions exist on rast_rel_2009_07_09
ServicesUtils.pm (dead) No revisions exist on rast_rel_2009_07_09
Signatures.pm (dead) No revisions exist on rast_rel_2009_07_09
Sim2.pm (dead) No revisions exist on rast_rel_2009_07_09
SimCompute.pm (dead) No revisions exist on rast_rel_2009_07_09
SimsTable.pm (dead) No revisions exist on rast_rel_2009_07_09
StrepRepeats.pm (dead) No revisions exist on rast_rel_2009_07_09
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2009_07_09
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2009_07_09
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2009_07_09
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2009_07_09
TabFile.pm (dead) No revisions exist on rast_rel_2009_07_09
TableCell.pm (dead) No revisions exist on rast_rel_2009_07_09
TaxUtils.pm (dead) No revisions exist on rast_rel_2009_07_09
TetraMap.pm (dead) No revisions exist on rast_rel_2009_07_09
TetraProfile.pm (dead) No revisions exist on rast_rel_2009_07_09
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2009_07_09
TraceObject.pm (dead) No revisions exist on rast_rel_2009_07_09
TreeFC.pm (dead) No revisions exist on rast_rel_2009_07_09
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2009_07_09
UpdateServer.pm (dead) No revisions exist on rast_rel_2009_07_09
WriteEMBL.pm (dead) No revisions exist on rast_rel_2009_07_09
WriteGenbank.pm (dead) No revisions exist on rast_rel_2009_07_09
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2009_07_09
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2009_07_09
crispr.pm (dead) No revisions exist on rast_rel_2009_07_09
ffxtree.pm (dead) No revisions exist on rast_rel_2009_07_09
find_tRNAs.pm (dead) No revisions exist on rast_rel_2009_07_09
genome_frequencies.pm (dead) No revisions exist on rast_rel_2009_07_09
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2009_07_09
gjoavllib.pm (dead) No revisions exist on rast_rel_2009_07_09
gjocluster.pm (dead) No revisions exist on rast_rel_2009_07_09
gjocodonlib.pm (dead) No revisions exist on rast_rel_2009_07_09
gjocontigmap.pm (dead) No revisions exist on rast_rel_2009_07_09
gjocontigs.pm (dead) No revisions exist on rast_rel_2009_07_09
gjogenbank.pm (dead) No revisions exist on rast_rel_2009_07_09
gjogff.pm (dead) No revisions exist on rast_rel_2009_07_09
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2009_07_09
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2009_07_09
gjostat.pm (dead) No revisions exist on rast_rel_2009_07_09
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2009_07_09
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2009_07_09
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2009_07_09
match_to_axes.pm (dead) No revisions exist on rast_rel_2009_07_09
merge_families.pl (dead) No revisions exist on rast_rel_2009_07_09
overlap_resolution.pm (dead) No revisions exist on rast_rel_2009_07_09
pubmed.tt (dead) No revisions exist on rast_rel_2009_07_09

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