[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.5  11 years  parrello  Added support for harvesting IDs from the annotation clearinghouse.
AnnoClearinghouse.pm  1.43  11 years  wilke  new method get_organism_name
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  13 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  13 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  11 years  overbeek  new Contigs.pm and compare_coding.pm
DBKernel.pm  1.55  11 years  parrello  Added last-insert-id support.
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.16  11 years  parrello  Fixed a bad URL.
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FC.pm  1.8  11 years  overbeek  basically debugged
FF.pm  1.29  11 years  overbeek  remove duplicate line
FFs.pm  1.34  11 years  arodri7  update to decision procedures
FIG.pm  1.757  11 years  paczian  added searching of alias column to search database function
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  11 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.12  11 years  dejongh  Moved variant code loading outside of for loop to speed up processing of multipl...
FIGMODEL.pm  1.13  11 years  chenry  *** empty log message ***
FIGMODELObject.pm  1.2  11 years  parrello  Minor changes in new-lines and tabs.
FIGMODELTable.pm  1.2  11 years  chenry  *** empty log message ***
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.51  11 years  parrello  Added a new method to clean up FASTA sequences.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.83  11 years  dejongh  Fix invocation of seqs_with_role; add check for FIGV genome to pegs_to_subsystem...
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.23  11 years  overbeek  fix to get rid of undefined value
FigFam.pm  1.77  11 years  arodri7  update to decision procedures
FigFams.pm  1.52  11 years  arodri7  update to decision procedures
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.7  11 years  chenry  *** empty log message ***
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.4  11 years  parrello  Fixed an error in the POD documentation. Fixed a compiler warning.
HTML.pm  1.130  11 years  arodri7  added links to set_prot_links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.11  11 years  olson  attempt at fixing pod2html bug
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.76  11 years  gdpusch  Added GLIMMER-3 support, and enhanced ambig support.
Observation.pm  1.76  11 years  arodri7  fixed link page in sims table
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PartitionSeqs.pm  1.2  11 years  overbeek  basically debugged
PinnedRegions.pm  1.19  11 years  paczian  fixed display of subsystems
ProtFamLite.pm  1.2  11 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  11 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  11 years  arodri7  added functions and made functions work
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.117  11 years  parrello  Added support for get_representative_genome and is_exchangable_subsystem.
SSU_rRNA_reps.pm  1.1  11 years  overbeek  fixes to support search for rRNAs
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.7  11 years  dejongh  Move get_hope_reactions_for_genome to model.pm
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SimFC.pm  1.3  11 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.7  11 years  parrello  Changed to round floating-point stats to integer values.
Subsystem.pm  1.144  11 years  parrello  Added a new method-- all_functions-- that allows SproutSubsys to retrieve role i...
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.8  11 years  parrello  Fixed a comment.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.116  11 years  parrello  Changed HTML tracing output to format multiple-line trace messages the same way ...
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.8  11 years  parrello  Fixed a glitch in list rendering.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
compare_coding.pm  1.1  11 years  overbeek  new Contigs.pm and compare_coding.pm
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_homologs.pm  1.3  11 years  overbeek  update from Gary
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.18  11 years  overbeek  additions to support partitioning of sims
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.5  11 years  overbeek  fix unitialized variable
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.14  11 years  overbeek  fixes to support search for rRNAs
model.pm  1.31  11 years  dejongh  Deleted checking for pegs in subsystem cells; only using seq_with_roles so it wo...
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.18  11 years  parrello  Added tracing support.
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2009_03_26
ACH.pm (dead) No revisions exist on rast_rel_2009_03_26
ACHserver.pm (dead) No revisions exist on rast_rel_2009_03_26
ALITRE.pm (dead) No revisions exist on rast_rel_2009_03_26
ALITREserver.pm (dead) No revisions exist on rast_rel_2009_03_26
ANNO.pm (dead) No revisions exist on rast_rel_2009_03_26
ANNOserver.pm (dead) No revisions exist on rast_rel_2009_03_26
AT.pm (dead) No revisions exist on rast_rel_2009_03_26
ATserver.pm (dead) No revisions exist on rast_rel_2009_03_26
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2009_03_26
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2009_03_26
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2009_03_26
AliTreeSims.pm (dead) No revisions exist on rast_rel_2009_03_26
AlignTree.pm (dead) No revisions exist on rast_rel_2009_03_26
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2009_03_26
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2009_03_26
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2009_03_26
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2009_03_26
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2009_03_26
BBasicLocation.pm (dead) No revisions exist on rast_rel_2009_03_26
BerkTable.pm (dead) No revisions exist on rast_rel_2009_03_26
Bin.pm (dead) No revisions exist on rast_rel_2009_03_26
BinningReports.pm (dead) No revisions exist on rast_rel_2009_03_26
Biochemistry.pm (dead) No revisions exist on rast_rel_2009_03_26
BlankSVP.pm (dead) No revisions exist on rast_rel_2009_03_26
BlastInterface.pm (dead) No revisions exist on rast_rel_2009_03_26
Boolean.pm (dead) No revisions exist on rast_rel_2009_03_26
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2009_03_26
CO.pm (dead) No revisions exist on rast_rel_2009_03_26
COserver.pm (dead) No revisions exist on rast_rel_2009_03_26
CallBlast.pm (dead) No revisions exist on rast_rel_2009_03_26
CallByProjection.pm (dead) No revisions exist on rast_rel_2009_03_26
CallScanner.pm (dead) No revisions exist on rast_rel_2009_03_26
Category.pm (dead) No revisions exist on rast_rel_2009_03_26
ClientThing.pm (dead) No revisions exist on rast_rel_2009_03_26
CloseGenomes.pm (dead) No revisions exist on rast_rel_2009_03_26
CloseStrains.pm (dead) No revisions exist on rast_rel_2009_03_26
ClusterPairs.pm (dead) No revisions exist on rast_rel_2009_03_26
Clustering.pm (dead) No revisions exist on rast_rel_2009_03_26
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2009_03_26
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2009_03_26
CommonCGI.pm (dead) No revisions exist on rast_rel_2009_03_26
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2009_03_26
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2009_03_26
Correspondence.pm (dead) No revisions exist on rast_rel_2009_03_26
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2009_03_26
Corresponds.pm (dead) No revisions exist on rast_rel_2009_03_26
CountTransactions.pm (dead) No revisions exist on rast_rel_2009_03_26
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2009_03_26
Dlits.pm (dead) No revisions exist on rast_rel_2009_03_26
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2009_03_26
ErrorMessage.pm (dead) No revisions exist on rast_rel_2009_03_26
EvalCom.pm (dead) No revisions exist on rast_rel_2009_03_26
EvalCon.pm (dead) No revisions exist on rast_rel_2009_03_26
EvalHelper.pm (dead) No revisions exist on rast_rel_2009_03_26
ExpressionDir.pm (dead) No revisions exist on rast_rel_2009_03_26
FBAMODEL.pm (dead) No revisions exist on rast_rel_2009_03_26
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2009_03_26
FBasicLocation.pm (dead) No revisions exist on rast_rel_2009_03_26
FFB3.pm (dead) No revisions exist on rast_rel_2009_03_26
FFserver.pm (dead) No revisions exist on rast_rel_2009_03_26
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2009_03_26
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2009_03_26
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2009_03_26
FIG_Config.pm (dead) No revisions exist on rast_rel_2009_03_26
FIG_Config.py (dead) No revisions exist on rast_rel_2009_03_26
FQUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
FastA.pm (dead) No revisions exist on rast_rel_2009_03_26
FastQ.pm (dead) No revisions exist on rast_rel_2009_03_26
FigSubsystem.pm (dead) No revisions exist on rast_rel_2009_03_26
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2009_03_26
Find_RNAs.pm (dead) No revisions exist on rast_rel_2009_03_26
FixTransactions.pm (dead) No revisions exist on rast_rel_2009_03_26
GEO.pm (dead) No revisions exist on rast_rel_2009_03_26
GPUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2009_03_26
GenerateClusters.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeChecker.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeSelector.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeSet.spec (dead) No revisions exist on rast_rel_2009_03_26
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2009_03_26
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2009_03_26
Hsp.pm (dead) No revisions exist on rast_rel_2009_03_26
IC50.pm (dead) No revisions exist on rast_rel_2009_03_26
IDclient.pm (dead) No revisions exist on rast_rel_2009_03_26
IS_Data.pm (dead) No revisions exist on rast_rel_2009_03_26
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2009_03_26
JulianDay.pm (dead) No revisions exist on rast_rel_2009_03_26
KBASE.pm (dead) No revisions exist on rast_rel_2009_03_26
KBIDUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
KBInvoke.pm (dead) No revisions exist on rast_rel_2009_03_26
KBRpcContext.pm (dead) No revisions exist on rast_rel_2009_03_26
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2009_03_26
KmerClassifier.pm (dead) No revisions exist on rast_rel_2009_03_26
KmerClient.pm (dead) No revisions exist on rast_rel_2009_03_26
KmerDb.pm (dead) No revisions exist on rast_rel_2009_03_26
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2009_03_26
KmerMgr.pm (dead) No revisions exist on rast_rel_2009_03_26
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2009_03_26
Kmers.pm (dead) No revisions exist on rast_rel_2009_03_26
Kmers2013.pm (dead) No revisions exist on rast_rel_2009_03_26
KmersOld.pm (dead) No revisions exist on rast_rel_2009_03_26
LinksUI.pm (dead) No revisions exist on rast_rel_2009_03_26
ListServerScripts.pm (dead) No revisions exist on rast_rel_2009_03_26
MD5Computer.pm (dead) No revisions exist on rast_rel_2009_03_26
MODELserv.pm (dead) No revisions exist on rast_rel_2009_03_26
MODELserv_client.pm (dead) No revisions exist on rast_rel_2009_03_26
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2009_03_26
MapToRef.pm (dead) No revisions exist on rast_rel_2009_03_26
MgRastSims.pm (dead) No revisions exist on rast_rel_2009_03_26
MinimalTracer.pm (dead) No revisions exist on rast_rel_2009_03_26
MissingRoles.pm (dead) No revisions exist on rast_rel_2009_03_26
MoveAliases.pm (dead) No revisions exist on rast_rel_2009_03_26
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2009_03_26
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2009_03_26
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2009_03_26
P3Contigs.pm (dead) No revisions exist on rast_rel_2009_03_26
P3DataAPI.pm (dead) No revisions exist on rast_rel_2009_03_26
P3Sequences.pm (dead) No revisions exist on rast_rel_2009_03_26
P3Signatures.pm (dead) No revisions exist on rast_rel_2009_03_26
P3Utils.pm (dead) No revisions exist on rast_rel_2009_03_26
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2009_03_26
PG.pm (dead) No revisions exist on rast_rel_2009_03_26
ParalogResolution.pm (dead) No revisions exist on rast_rel_2009_03_26
ParseDate.pm (dead) No revisions exist on rast_rel_2009_03_26
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2009_03_26
PersistentSets.pm (dead) No revisions exist on rast_rel_2009_03_26
Phage.pm (dead) No revisions exist on rast_rel_2009_03_26
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2009_03_26
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2009_03_26
Prodigal.pm (dead) No revisions exist on rast_rel_2009_03_26
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2009_03_26
ProtSims.pm (dead) No revisions exist on rast_rel_2009_03_26
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2009_03_26
RAST_submission.pm (dead) No revisions exist on rast_rel_2009_03_26
RASTlib.pm (dead) No revisions exist on rast_rel_2009_03_26
RASTserver.pm (dead) No revisions exist on rast_rel_2009_03_26
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2009_03_26
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_03_26
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_03_26
ReactionPath.pm (dead) No revisions exist on rast_rel_2009_03_26
RepGenome.pm (dead) No revisions exist on rast_rel_2009_03_26
RiboProtQC.pm (dead) No revisions exist on rast_rel_2009_03_26
RoleParse.pm (dead) No revisions exist on rast_rel_2009_03_26
RoleRule.pm (dead) No revisions exist on rast_rel_2009_03_26
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2009_03_26
SAP.pm (dead) No revisions exist on rast_rel_2009_03_26
SAPserver.pm (dead) No revisions exist on rast_rel_2009_03_26
SAPtutorial.pm (dead) No revisions exist on rast_rel_2009_03_26
SEED.spec (dead) No revisions exist on rast_rel_2009_03_26
SEEDClient.pm (dead) No revisions exist on rast_rel_2009_03_26
SEEDImpl.pm (dead) No revisions exist on rast_rel_2009_03_26
SEEDServer.pm (dead) No revisions exist on rast_rel_2009_03_26
SRAlib.pm (dead) No revisions exist on rast_rel_2009_03_26
SS.pm (dead) No revisions exist on rast_rel_2009_03_26
SSserver.pm (dead) No revisions exist on rast_rel_2009_03_26
SUP.pm (dead) No revisions exist on rast_rel_2009_03_26
SUPserver.pm (dead) No revisions exist on rast_rel_2009_03_26
SampleDir.pm (dead) No revisions exist on rast_rel_2009_03_26
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2009_03_26
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2009_03_26
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2009_03_26
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2009_03_26
ScriptThing.pm (dead) No revisions exist on rast_rel_2009_03_26
ScriptUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedAware.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedEnv.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedHTML.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedSearch.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedURLs.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
SeedV.pm (dead) No revisions exist on rast_rel_2009_03_26
SeqStore.pm (dead) No revisions exist on rast_rel_2009_03_26
ServComplex.pm (dead) No revisions exist on rast_rel_2009_03_26
ServFIGfam.pm (dead) No revisions exist on rast_rel_2009_03_26
ServFeature.pm (dead) No revisions exist on rast_rel_2009_03_26
ServGenome.pm (dead) No revisions exist on rast_rel_2009_03_26
ServIndex.pm (dead) No revisions exist on rast_rel_2009_03_26
ServOTU.pm (dead) No revisions exist on rast_rel_2009_03_26
ServReaction.pm (dead) No revisions exist on rast_rel_2009_03_26
ServRole.pm (dead) No revisions exist on rast_rel_2009_03_26
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2009_03_26
ServerScripts.pm (dead) No revisions exist on rast_rel_2009_03_26
ServerThing.pm (dead) No revisions exist on rast_rel_2009_03_26
ServicesUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
Signatures.pm (dead) No revisions exist on rast_rel_2009_03_26
Sim2.pm (dead) No revisions exist on rast_rel_2009_03_26
SimCompute.pm (dead) No revisions exist on rast_rel_2009_03_26
SimsTable.pm (dead) No revisions exist on rast_rel_2009_03_26
StrepRepeats.pm (dead) No revisions exist on rast_rel_2009_03_26
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2009_03_26
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2009_03_26
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2009_03_26
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
TBLstuff.pm (dead) No revisions exist on rast_rel_2009_03_26
TabFile.pm (dead) No revisions exist on rast_rel_2009_03_26
TableCell.pm (dead) No revisions exist on rast_rel_2009_03_26
TaxUtils.pm (dead) No revisions exist on rast_rel_2009_03_26
TetraMap.pm (dead) No revisions exist on rast_rel_2009_03_26
TetraProfile.pm (dead) No revisions exist on rast_rel_2009_03_26
TimeZone.pm (dead) No revisions exist on rast_rel_2009_03_26
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2009_03_26
TraceObject.pm (dead) No revisions exist on rast_rel_2009_03_26
TreeFC.pm (dead) No revisions exist on rast_rel_2009_03_26
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2009_03_26
UpdateServer.pm (dead) No revisions exist on rast_rel_2009_03_26
WriteEMBL.pm (dead) No revisions exist on rast_rel_2009_03_26
WriteGenbank.pm (dead) No revisions exist on rast_rel_2009_03_26
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2009_03_26
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2009_03_26
crispr.pm (dead) No revisions exist on rast_rel_2009_03_26
ffxtree.pm (dead) No revisions exist on rast_rel_2009_03_26
find_tRNAs.pm (dead) No revisions exist on rast_rel_2009_03_26
gd_tree_0.pm (dead) No revisions exist on rast_rel_2009_03_26
genome_frequencies.pm (dead) No revisions exist on rast_rel_2009_03_26
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2009_03_26
gjoavllib.pm (dead) No revisions exist on rast_rel_2009_03_26
gjocluster.pm (dead) No revisions exist on rast_rel_2009_03_26
gjocodonlib.pm (dead) No revisions exist on rast_rel_2009_03_26
gjocontigmap.pm (dead) No revisions exist on rast_rel_2009_03_26
gjocontigs.pm (dead) No revisions exist on rast_rel_2009_03_26
gjogenbank.pm (dead) No revisions exist on rast_rel_2009_03_26
gjogff.pm (dead) No revisions exist on rast_rel_2009_03_26
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2009_03_26
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2009_03_26
gjostat.pm (dead) No revisions exist on rast_rel_2009_03_26
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2009_03_26
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2009_03_26
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2009_03_26
match_to_axes.pm (dead) No revisions exist on rast_rel_2009_03_26
merge_families.pl (dead) No revisions exist on rast_rel_2009_03_26
overlap_resolution.pm (dead) No revisions exist on rast_rel_2009_03_26
pubmed.tt (dead) No revisions exist on rast_rel_2009_03_26

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