[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.38  11 years  wilke  *** empty log message ***
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.7  11 years  overbeek  additions to support partitioning of sims
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.16  11 years  parrello  Fixed a bad URL.
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.23  11 years  arodri7  made changes to steps in decision procedures to make it faster
FFs.pm  1.30  11 years  arodri7  corrected function related to figfam webpage: division error
FIG.pm  1.748  11 years  bartels  bugfix
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.9  11 years  paczian  added the function "coupled_to_batch"
FIGMODEL.pm  1.8  11 years  chenry  *** empty log message ***
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.50  11 years  parrello  Moved in the crude-distance subroutine so it can be shared. Fixed an error in th...
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.78  11 years  olson  Cache contig info.
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.21  11 years  overbeek  fixes to seeing if two pieces can be glued together
FigFam.pm  1.76  11 years  arodri7  made changes to steps in decision procedures to make it faster
FigFams.pm  1.51  11 years  arodri7  added function for getting list of pegs from a family from a list of genomes
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.4  11 years  chenry  *** empty log message ***
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.3  11 years  olson  Fix database version of GenomeMeta's get_log output to match the old format, so ...
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.11  11 years  olson  attempt at fixing pod2html bug
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.76  11 years  gdpusch  Added GLIMMER-3 support, and enhanced ambig support.
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.15  11 years  paczian  added functional coupling pin
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.114  11 years  parrello  Fixed a bug in names_of_compound. Implemented find_role_in_org. Fixed some comme...
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.7  11 years  dejongh  Move get_hope_reactions_for_genome to model.pm
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SimFC.pm  1.2  11 years  overbeek  try
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.7  11 years  parrello  Changed to round floating-point stats to integer values.
Subsystem.pm  1.144  11 years  parrello  Added a new method-- all_functions-- that allows SproutSubsys to retrieve role i...
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.8  11 years  parrello  Fixed a comment.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.115  11 years  parrello  Added a method to dump an object to the trace file. Removed the idiotic tool-hea...
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.6  11 years  parrello  Refactored so that other objects can be created to render output in different fo...
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.18  11 years  overbeek  additions to support partitioning of sims
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.3  11 years  overbeek  updates from Gary
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.30  11 years  dejongh  debug msg
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2009_02_05
ACH.pm (dead) No revisions exist on rast_rel_2009_02_05
ACHserver.pm (dead) No revisions exist on rast_rel_2009_02_05
ALITRE.pm (dead) No revisions exist on rast_rel_2009_02_05
ALITREserver.pm (dead) No revisions exist on rast_rel_2009_02_05
ANNO.pm (dead) No revisions exist on rast_rel_2009_02_05
ANNOserver.pm (dead) No revisions exist on rast_rel_2009_02_05
AT.pm (dead) No revisions exist on rast_rel_2009_02_05
ATserver.pm (dead) No revisions exist on rast_rel_2009_02_05
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2009_02_05
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2009_02_05
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2009_02_05
AliTreeSims.pm (dead) No revisions exist on rast_rel_2009_02_05
AlignTree.pm (dead) No revisions exist on rast_rel_2009_02_05
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2009_02_05
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2009_02_05
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2009_02_05
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2009_02_05
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2009_02_05
BBasicLocation.pm (dead) No revisions exist on rast_rel_2009_02_05
BerkTable.pm (dead) No revisions exist on rast_rel_2009_02_05
Bin.pm (dead) No revisions exist on rast_rel_2009_02_05
BinningReports.pm (dead) No revisions exist on rast_rel_2009_02_05
Biochemistry.pm (dead) No revisions exist on rast_rel_2009_02_05
BlankSVP.pm (dead) No revisions exist on rast_rel_2009_02_05
BlastInterface.pm (dead) No revisions exist on rast_rel_2009_02_05
Boolean.pm (dead) No revisions exist on rast_rel_2009_02_05
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2009_02_05
CO.pm (dead) No revisions exist on rast_rel_2009_02_05
COserver.pm (dead) No revisions exist on rast_rel_2009_02_05
CallBlast.pm (dead) No revisions exist on rast_rel_2009_02_05
CallByProjection.pm (dead) No revisions exist on rast_rel_2009_02_05
CallScanner.pm (dead) No revisions exist on rast_rel_2009_02_05
Category.pm (dead) No revisions exist on rast_rel_2009_02_05
ClientThing.pm (dead) No revisions exist on rast_rel_2009_02_05
CloseGenomes.pm (dead) No revisions exist on rast_rel_2009_02_05
CloseStrains.pm (dead) No revisions exist on rast_rel_2009_02_05
ClusterPairs.pm (dead) No revisions exist on rast_rel_2009_02_05
Clustering.pm (dead) No revisions exist on rast_rel_2009_02_05
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2009_02_05
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2009_02_05
CommonCGI.pm (dead) No revisions exist on rast_rel_2009_02_05
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2009_02_05
Contigs.pm (dead) No revisions exist on rast_rel_2009_02_05
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2009_02_05
Correspondence.pm (dead) No revisions exist on rast_rel_2009_02_05
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2009_02_05
Corresponds.pm (dead) No revisions exist on rast_rel_2009_02_05
CountTransactions.pm (dead) No revisions exist on rast_rel_2009_02_05
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2009_02_05
Dlits.pm (dead) No revisions exist on rast_rel_2009_02_05
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2009_02_05
ErrorMessage.pm (dead) No revisions exist on rast_rel_2009_02_05
EvalCom.pm (dead) No revisions exist on rast_rel_2009_02_05
EvalCon.pm (dead) No revisions exist on rast_rel_2009_02_05
EvalHelper.pm (dead) No revisions exist on rast_rel_2009_02_05
ExpressionDir.pm (dead) No revisions exist on rast_rel_2009_02_05
FBAMODEL.pm (dead) No revisions exist on rast_rel_2009_02_05
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2009_02_05
FBasicLocation.pm (dead) No revisions exist on rast_rel_2009_02_05
FC.pm (dead) No revisions exist on rast_rel_2009_02_05
FFB3.pm (dead) No revisions exist on rast_rel_2009_02_05
FFserver.pm (dead) No revisions exist on rast_rel_2009_02_05
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2009_02_05
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2009_02_05
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2009_02_05
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2009_02_05
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2009_02_05
FIG_Config.pm (dead) No revisions exist on rast_rel_2009_02_05
FIG_Config.py (dead) No revisions exist on rast_rel_2009_02_05
FQUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
FastA.pm (dead) No revisions exist on rast_rel_2009_02_05
FastQ.pm (dead) No revisions exist on rast_rel_2009_02_05
FigSubsystem.pm (dead) No revisions exist on rast_rel_2009_02_05
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2009_02_05
Find_RNAs.pm (dead) No revisions exist on rast_rel_2009_02_05
FixTransactions.pm (dead) No revisions exist on rast_rel_2009_02_05
GEO.pm (dead) No revisions exist on rast_rel_2009_02_05
GPUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2009_02_05
GenerateClusters.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeChecker.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeSelector.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeSet.spec (dead) No revisions exist on rast_rel_2009_02_05
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2009_02_05
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2009_02_05
Hsp.pm (dead) No revisions exist on rast_rel_2009_02_05
IC50.pm (dead) No revisions exist on rast_rel_2009_02_05
IDclient.pm (dead) No revisions exist on rast_rel_2009_02_05
IS_Data.pm (dead) No revisions exist on rast_rel_2009_02_05
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2009_02_05
JulianDay.pm (dead) No revisions exist on rast_rel_2009_02_05
KBASE.pm (dead) No revisions exist on rast_rel_2009_02_05
KBIDUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
KBInvoke.pm (dead) No revisions exist on rast_rel_2009_02_05
KBRpcContext.pm (dead) No revisions exist on rast_rel_2009_02_05
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2009_02_05
KmerClassifier.pm (dead) No revisions exist on rast_rel_2009_02_05
KmerClient.pm (dead) No revisions exist on rast_rel_2009_02_05
KmerDb.pm (dead) No revisions exist on rast_rel_2009_02_05
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2009_02_05
KmerMgr.pm (dead) No revisions exist on rast_rel_2009_02_05
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2009_02_05
Kmers.pm (dead) No revisions exist on rast_rel_2009_02_05
Kmers2013.pm (dead) No revisions exist on rast_rel_2009_02_05
KmersOld.pm (dead) No revisions exist on rast_rel_2009_02_05
LinksUI.pm (dead) No revisions exist on rast_rel_2009_02_05
ListServerScripts.pm (dead) No revisions exist on rast_rel_2009_02_05
MD5Computer.pm (dead) No revisions exist on rast_rel_2009_02_05
MODELserv.pm (dead) No revisions exist on rast_rel_2009_02_05
MODELserv_client.pm (dead) No revisions exist on rast_rel_2009_02_05
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2009_02_05
MapToRef.pm (dead) No revisions exist on rast_rel_2009_02_05
MgRastSims.pm (dead) No revisions exist on rast_rel_2009_02_05
MinimalTracer.pm (dead) No revisions exist on rast_rel_2009_02_05
MissingRoles.pm (dead) No revisions exist on rast_rel_2009_02_05
MoveAliases.pm (dead) No revisions exist on rast_rel_2009_02_05
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2009_02_05
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2009_02_05
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2009_02_05
P3Contigs.pm (dead) No revisions exist on rast_rel_2009_02_05
P3DataAPI.pm (dead) No revisions exist on rast_rel_2009_02_05
P3Sequences.pm (dead) No revisions exist on rast_rel_2009_02_05
P3Signatures.pm (dead) No revisions exist on rast_rel_2009_02_05
P3Utils.pm (dead) No revisions exist on rast_rel_2009_02_05
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2009_02_05
PG.pm (dead) No revisions exist on rast_rel_2009_02_05
ParalogResolution.pm (dead) No revisions exist on rast_rel_2009_02_05
ParseDate.pm (dead) No revisions exist on rast_rel_2009_02_05
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2009_02_05
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2009_02_05
PersistentSets.pm (dead) No revisions exist on rast_rel_2009_02_05
Phage.pm (dead) No revisions exist on rast_rel_2009_02_05
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2009_02_05
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2009_02_05
Prodigal.pm (dead) No revisions exist on rast_rel_2009_02_05
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2009_02_05
ProtFamLite.pm (dead) No revisions exist on rast_rel_2009_02_05
ProtFams.pm (dead) No revisions exist on rast_rel_2009_02_05
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2009_02_05
ProtSims.pm (dead) No revisions exist on rast_rel_2009_02_05
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2009_02_05
RAST_submission.pm (dead) No revisions exist on rast_rel_2009_02_05
RASTlib.pm (dead) No revisions exist on rast_rel_2009_02_05
RASTserver.pm (dead) No revisions exist on rast_rel_2009_02_05
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2009_02_05
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_02_05
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2009_02_05
ReactionPath.pm (dead) No revisions exist on rast_rel_2009_02_05
RepGenome.pm (dead) No revisions exist on rast_rel_2009_02_05
RiboProtQC.pm (dead) No revisions exist on rast_rel_2009_02_05
RoleParse.pm (dead) No revisions exist on rast_rel_2009_02_05
RoleRule.pm (dead) No revisions exist on rast_rel_2009_02_05
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2009_02_05
SAP.pm (dead) No revisions exist on rast_rel_2009_02_05
SAPserver.pm (dead) No revisions exist on rast_rel_2009_02_05
SAPtutorial.pm (dead) No revisions exist on rast_rel_2009_02_05
SEED.spec (dead) No revisions exist on rast_rel_2009_02_05
SEEDClient.pm (dead) No revisions exist on rast_rel_2009_02_05
SEEDImpl.pm (dead) No revisions exist on rast_rel_2009_02_05
SEEDServer.pm (dead) No revisions exist on rast_rel_2009_02_05
SRAlib.pm (dead) No revisions exist on rast_rel_2009_02_05
SS.pm (dead) No revisions exist on rast_rel_2009_02_05
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2009_02_05
SSserver.pm (dead) No revisions exist on rast_rel_2009_02_05
SUP.pm (dead) No revisions exist on rast_rel_2009_02_05
SUPserver.pm (dead) No revisions exist on rast_rel_2009_02_05
SampleDir.pm (dead) No revisions exist on rast_rel_2009_02_05
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2009_02_05
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2009_02_05
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2009_02_05
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2009_02_05
ScriptThing.pm (dead) No revisions exist on rast_rel_2009_02_05
ScriptUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedAware.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedEnv.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedHTML.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedSearch.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedURLs.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
SeedV.pm (dead) No revisions exist on rast_rel_2009_02_05
SeqStore.pm (dead) No revisions exist on rast_rel_2009_02_05
ServComplex.pm (dead) No revisions exist on rast_rel_2009_02_05
ServFIGfam.pm (dead) No revisions exist on rast_rel_2009_02_05
ServFeature.pm (dead) No revisions exist on rast_rel_2009_02_05
ServGenome.pm (dead) No revisions exist on rast_rel_2009_02_05
ServIndex.pm (dead) No revisions exist on rast_rel_2009_02_05
ServOTU.pm (dead) No revisions exist on rast_rel_2009_02_05
ServReaction.pm (dead) No revisions exist on rast_rel_2009_02_05
ServRole.pm (dead) No revisions exist on rast_rel_2009_02_05
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2009_02_05
ServerScripts.pm (dead) No revisions exist on rast_rel_2009_02_05
ServerThing.pm (dead) No revisions exist on rast_rel_2009_02_05
ServicesUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
Signatures.pm (dead) No revisions exist on rast_rel_2009_02_05
Sim2.pm (dead) No revisions exist on rast_rel_2009_02_05
SimCompute.pm (dead) No revisions exist on rast_rel_2009_02_05
SimsTable.pm (dead) No revisions exist on rast_rel_2009_02_05
StrepRepeats.pm (dead) No revisions exist on rast_rel_2009_02_05
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2009_02_05
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2009_02_05
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2009_02_05
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
TBLstuff.pm (dead) No revisions exist on rast_rel_2009_02_05
TabFile.pm (dead) No revisions exist on rast_rel_2009_02_05
TableCell.pm (dead) No revisions exist on rast_rel_2009_02_05
TaxUtils.pm (dead) No revisions exist on rast_rel_2009_02_05
TetraMap.pm (dead) No revisions exist on rast_rel_2009_02_05
TetraProfile.pm (dead) No revisions exist on rast_rel_2009_02_05
TimeZone.pm (dead) No revisions exist on rast_rel_2009_02_05
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2009_02_05
TraceObject.pm (dead) No revisions exist on rast_rel_2009_02_05
TreeFC.pm (dead) No revisions exist on rast_rel_2009_02_05
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2009_02_05
UpdateServer.pm (dead) No revisions exist on rast_rel_2009_02_05
WriteEMBL.pm (dead) No revisions exist on rast_rel_2009_02_05
WriteGenbank.pm (dead) No revisions exist on rast_rel_2009_02_05
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2009_02_05
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2009_02_05
compare_coding.pm (dead) No revisions exist on rast_rel_2009_02_05
crispr.pm (dead) No revisions exist on rast_rel_2009_02_05
ffxtree.pm (dead) No revisions exist on rast_rel_2009_02_05
find_homologs.pm (dead) No revisions exist on rast_rel_2009_02_05
find_tRNAs.pm (dead) No revisions exist on rast_rel_2009_02_05
gd_tree_0.pm (dead) No revisions exist on rast_rel_2009_02_05
genome_frequencies.pm (dead) No revisions exist on rast_rel_2009_02_05
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2009_02_05
gjoavllib.pm (dead) No revisions exist on rast_rel_2009_02_05
gjocluster.pm (dead) No revisions exist on rast_rel_2009_02_05
gjocodonlib.pm (dead) No revisions exist on rast_rel_2009_02_05
gjocontigmap.pm (dead) No revisions exist on rast_rel_2009_02_05
gjocontigs.pm (dead) No revisions exist on rast_rel_2009_02_05
gjogenbank.pm (dead) No revisions exist on rast_rel_2009_02_05
gjogff.pm (dead) No revisions exist on rast_rel_2009_02_05
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2009_02_05
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2009_02_05
gjostat.pm (dead) No revisions exist on rast_rel_2009_02_05
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2009_02_05
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2009_02_05
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2009_02_05
match_to_axes.pm (dead) No revisions exist on rast_rel_2009_02_05
merge_families.pl (dead) No revisions exist on rast_rel_2009_02_05
overlap_resolution.pm (dead) No revisions exist on rast_rel_2009_02_05
pubmed.tt (dead) No revisions exist on rast_rel_2009_02_05

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