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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  13 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.6  11 years  parrello  Changed to avoid an unnecessary creation of the FIG object at load time.
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.16  11 years  parrello  Fixed a bad URL.
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.741  11 years  olson  LRU cache used for get_subsystem(). Add clearinghouse_ping()
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.8  11 years  paczian  added subsystems_for_peg_complete added protein_subsystem_to_roles
FIGMODEL.pm  1.5  11 years  chenry  *** empty log message ***
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.48  11 years  paczian  moved encoded_annotation_to_natural_english to this module to be self contained
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.76  11 years  paczian  added subsystems_for_peg_complete added protein_subsystem_to_roles
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.19  11 years  overbeek  fixes to detecting consistent fragments
FigFam.pm  1.75  12 years  arodri7  updated and corrected sub new
FigFams.pm  1.48  11 years  gdpusch  Added POD block listing the methods within this module.
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.2  11 years  chenry  *** empty log message ***
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.3  11 years  olson  Fix database version of GenomeMeta's get_log output to match the old format, so ...
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.11  11 years  olson  attempt at fixing pod2html bug
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.76  11 years  gdpusch  Added GLIMMER-3 support, and enhanced ambig support.
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.15  11 years  paczian  added functional coupling pin
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.113  11 years  dejongh  fix scenario_directory to work for All
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.7  11 years  dejongh  Move get_hope_reactions_for_genome to model.pm
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.7  11 years  parrello  Changed to round floating-point stats to integer values.
Subsystem.pm  1.143  11 years  dejongh  removed copy_hope_info
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.7  11 years  parrello  Quoted values in string comparisons to avoid an error when working with sim obje...
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.114  11 years  olson  When tracing CGIs run at the command line, make the tracing code honor the TRACI...
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.17  11 years  golsen  Fixed a bug introduced into align_with_clustal() that caused it to return [ id, ...
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.3  11 years  overbeek  updates from Gary
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.30  11 years  dejongh  debug msg
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_12_18
ACH.pm (dead) No revisions exist on rast_rel_2008_12_18
ACHserver.pm (dead) No revisions exist on rast_rel_2008_12_18
ALITRE.pm (dead) No revisions exist on rast_rel_2008_12_18
ALITREserver.pm (dead) No revisions exist on rast_rel_2008_12_18
ANNO.pm (dead) No revisions exist on rast_rel_2008_12_18
ANNOserver.pm (dead) No revisions exist on rast_rel_2008_12_18
AT.pm (dead) No revisions exist on rast_rel_2008_12_18
ATserver.pm (dead) No revisions exist on rast_rel_2008_12_18
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2008_12_18
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2008_12_18
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2008_12_18
AliTreeSims.pm (dead) No revisions exist on rast_rel_2008_12_18
AlignTree.pm (dead) No revisions exist on rast_rel_2008_12_18
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2008_12_18
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2008_12_18
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2008_12_18
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2008_12_18
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2008_12_18
BBasicLocation.pm (dead) No revisions exist on rast_rel_2008_12_18
BerkTable.pm (dead) No revisions exist on rast_rel_2008_12_18
Bin.pm (dead) No revisions exist on rast_rel_2008_12_18
BinningReports.pm (dead) No revisions exist on rast_rel_2008_12_18
Biochemistry.pm (dead) No revisions exist on rast_rel_2008_12_18
BlankSVP.pm (dead) No revisions exist on rast_rel_2008_12_18
BlastInterface.pm (dead) No revisions exist on rast_rel_2008_12_18
Boolean.pm (dead) No revisions exist on rast_rel_2008_12_18
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2008_12_18
CO.pm (dead) No revisions exist on rast_rel_2008_12_18
COserver.pm (dead) No revisions exist on rast_rel_2008_12_18
CallBlast.pm (dead) No revisions exist on rast_rel_2008_12_18
CallByProjection.pm (dead) No revisions exist on rast_rel_2008_12_18
CallScanner.pm (dead) No revisions exist on rast_rel_2008_12_18
Category.pm (dead) No revisions exist on rast_rel_2008_12_18
ClientThing.pm (dead) No revisions exist on rast_rel_2008_12_18
CloseGenomes.pm (dead) No revisions exist on rast_rel_2008_12_18
CloseStrains.pm (dead) No revisions exist on rast_rel_2008_12_18
ClusterPairs.pm (dead) No revisions exist on rast_rel_2008_12_18
Clustering.pm (dead) No revisions exist on rast_rel_2008_12_18
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2008_12_18
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2008_12_18
CommonCGI.pm (dead) No revisions exist on rast_rel_2008_12_18
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2008_12_18
Contigs.pm (dead) No revisions exist on rast_rel_2008_12_18
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2008_12_18
Correspondence.pm (dead) No revisions exist on rast_rel_2008_12_18
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2008_12_18
Corresponds.pm (dead) No revisions exist on rast_rel_2008_12_18
CountTransactions.pm (dead) No revisions exist on rast_rel_2008_12_18
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2008_12_18
Dlits.pm (dead) No revisions exist on rast_rel_2008_12_18
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2008_12_18
ErrorMessage.pm (dead) No revisions exist on rast_rel_2008_12_18
EvalCom.pm (dead) No revisions exist on rast_rel_2008_12_18
EvalCon.pm (dead) No revisions exist on rast_rel_2008_12_18
EvalHelper.pm (dead) No revisions exist on rast_rel_2008_12_18
ExpressionDir.pm (dead) No revisions exist on rast_rel_2008_12_18
FBAMODEL.pm (dead) No revisions exist on rast_rel_2008_12_18
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2008_12_18
FBasicLocation.pm (dead) No revisions exist on rast_rel_2008_12_18
FC.pm (dead) No revisions exist on rast_rel_2008_12_18
FFB3.pm (dead) No revisions exist on rast_rel_2008_12_18
FFserver.pm (dead) No revisions exist on rast_rel_2008_12_18
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2008_12_18
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2008_12_18
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2008_12_18
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2008_12_18
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2008_12_18
FIG_Config.pm (dead) No revisions exist on rast_rel_2008_12_18
FIG_Config.py (dead) No revisions exist on rast_rel_2008_12_18
FQUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
FastA.pm (dead) No revisions exist on rast_rel_2008_12_18
FastQ.pm (dead) No revisions exist on rast_rel_2008_12_18
FigSubsystem.pm (dead) No revisions exist on rast_rel_2008_12_18
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2008_12_18
Find_RNAs.pm (dead) No revisions exist on rast_rel_2008_12_18
FixTransactions.pm (dead) No revisions exist on rast_rel_2008_12_18
GEO.pm (dead) No revisions exist on rast_rel_2008_12_18
GPUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2008_12_18
GenerateClusters.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeChecker.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeSelector.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeSet.spec (dead) No revisions exist on rast_rel_2008_12_18
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2008_12_18
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2008_12_18
Hsp.pm (dead) No revisions exist on rast_rel_2008_12_18
IC50.pm (dead) No revisions exist on rast_rel_2008_12_18
IDclient.pm (dead) No revisions exist on rast_rel_2008_12_18
IS_Data.pm (dead) No revisions exist on rast_rel_2008_12_18
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2008_12_18
JulianDay.pm (dead) No revisions exist on rast_rel_2008_12_18
KBASE.pm (dead) No revisions exist on rast_rel_2008_12_18
KBIDUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
KBInvoke.pm (dead) No revisions exist on rast_rel_2008_12_18
KBRpcContext.pm (dead) No revisions exist on rast_rel_2008_12_18
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2008_12_18
KmerClassifier.pm (dead) No revisions exist on rast_rel_2008_12_18
KmerClient.pm (dead) No revisions exist on rast_rel_2008_12_18
KmerDb.pm (dead) No revisions exist on rast_rel_2008_12_18
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2008_12_18
KmerMgr.pm (dead) No revisions exist on rast_rel_2008_12_18
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2008_12_18
Kmers.pm (dead) No revisions exist on rast_rel_2008_12_18
Kmers2013.pm (dead) No revisions exist on rast_rel_2008_12_18
KmersOld.pm (dead) No revisions exist on rast_rel_2008_12_18
LinksUI.pm (dead) No revisions exist on rast_rel_2008_12_18
ListServerScripts.pm (dead) No revisions exist on rast_rel_2008_12_18
MD5Computer.pm (dead) No revisions exist on rast_rel_2008_12_18
MODELserv.pm (dead) No revisions exist on rast_rel_2008_12_18
MODELserv_client.pm (dead) No revisions exist on rast_rel_2008_12_18
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2008_12_18
MapToRef.pm (dead) No revisions exist on rast_rel_2008_12_18
MgRastSims.pm (dead) No revisions exist on rast_rel_2008_12_18
MinimalTracer.pm (dead) No revisions exist on rast_rel_2008_12_18
MissingRoles.pm (dead) No revisions exist on rast_rel_2008_12_18
MoveAliases.pm (dead) No revisions exist on rast_rel_2008_12_18
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2008_12_18
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2008_12_18
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2008_12_18
P3Contigs.pm (dead) No revisions exist on rast_rel_2008_12_18
P3DataAPI.pm (dead) No revisions exist on rast_rel_2008_12_18
P3Sequences.pm (dead) No revisions exist on rast_rel_2008_12_18
P3Signatures.pm (dead) No revisions exist on rast_rel_2008_12_18
P3Utils.pm (dead) No revisions exist on rast_rel_2008_12_18
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2008_12_18
PG.pm (dead) No revisions exist on rast_rel_2008_12_18
ParalogResolution.pm (dead) No revisions exist on rast_rel_2008_12_18
ParseDate.pm (dead) No revisions exist on rast_rel_2008_12_18
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2008_12_18
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2008_12_18
PersistentSets.pm (dead) No revisions exist on rast_rel_2008_12_18
Phage.pm (dead) No revisions exist on rast_rel_2008_12_18
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2008_12_18
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2008_12_18
Prodigal.pm (dead) No revisions exist on rast_rel_2008_12_18
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2008_12_18
ProtFamLite.pm (dead) No revisions exist on rast_rel_2008_12_18
ProtFams.pm (dead) No revisions exist on rast_rel_2008_12_18
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2008_12_18
ProtSims.pm (dead) No revisions exist on rast_rel_2008_12_18
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2008_12_18
RAST_submission.pm (dead) No revisions exist on rast_rel_2008_12_18
RASTlib.pm (dead) No revisions exist on rast_rel_2008_12_18
RASTserver.pm (dead) No revisions exist on rast_rel_2008_12_18
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2008_12_18
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_12_18
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_12_18
ReactionPath.pm (dead) No revisions exist on rast_rel_2008_12_18
RepGenome.pm (dead) No revisions exist on rast_rel_2008_12_18
RiboProtQC.pm (dead) No revisions exist on rast_rel_2008_12_18
RoleParse.pm (dead) No revisions exist on rast_rel_2008_12_18
RoleRule.pm (dead) No revisions exist on rast_rel_2008_12_18
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2008_12_18
SAP.pm (dead) No revisions exist on rast_rel_2008_12_18
SAPserver.pm (dead) No revisions exist on rast_rel_2008_12_18
SAPtutorial.pm (dead) No revisions exist on rast_rel_2008_12_18
SEED.spec (dead) No revisions exist on rast_rel_2008_12_18
SEEDClient.pm (dead) No revisions exist on rast_rel_2008_12_18
SEEDImpl.pm (dead) No revisions exist on rast_rel_2008_12_18
SEEDServer.pm (dead) No revisions exist on rast_rel_2008_12_18
SRAlib.pm (dead) No revisions exist on rast_rel_2008_12_18
SS.pm (dead) No revisions exist on rast_rel_2008_12_18
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_12_18
SSserver.pm (dead) No revisions exist on rast_rel_2008_12_18
SUP.pm (dead) No revisions exist on rast_rel_2008_12_18
SUPserver.pm (dead) No revisions exist on rast_rel_2008_12_18
SampleDir.pm (dead) No revisions exist on rast_rel_2008_12_18
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2008_12_18
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2008_12_18
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2008_12_18
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2008_12_18
ScriptThing.pm (dead) No revisions exist on rast_rel_2008_12_18
ScriptUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedAware.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedEnv.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedHTML.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedSearch.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedSims.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedURLs.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
SeedV.pm (dead) No revisions exist on rast_rel_2008_12_18
SeqStore.pm (dead) No revisions exist on rast_rel_2008_12_18
ServComplex.pm (dead) No revisions exist on rast_rel_2008_12_18
ServFIGfam.pm (dead) No revisions exist on rast_rel_2008_12_18
ServFeature.pm (dead) No revisions exist on rast_rel_2008_12_18
ServGenome.pm (dead) No revisions exist on rast_rel_2008_12_18
ServIndex.pm (dead) No revisions exist on rast_rel_2008_12_18
ServOTU.pm (dead) No revisions exist on rast_rel_2008_12_18
ServReaction.pm (dead) No revisions exist on rast_rel_2008_12_18
ServRole.pm (dead) No revisions exist on rast_rel_2008_12_18
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2008_12_18
ServerScripts.pm (dead) No revisions exist on rast_rel_2008_12_18
ServerThing.pm (dead) No revisions exist on rast_rel_2008_12_18
ServicesUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
Signatures.pm (dead) No revisions exist on rast_rel_2008_12_18
Sim2.pm (dead) No revisions exist on rast_rel_2008_12_18
SimCompute.pm (dead) No revisions exist on rast_rel_2008_12_18
SimFC.pm (dead) No revisions exist on rast_rel_2008_12_18
SimsTable.pm (dead) No revisions exist on rast_rel_2008_12_18
StrepRepeats.pm (dead) No revisions exist on rast_rel_2008_12_18
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2008_12_18
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2008_12_18
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2008_12_18
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
TBLstuff.pm (dead) No revisions exist on rast_rel_2008_12_18
TabFile.pm (dead) No revisions exist on rast_rel_2008_12_18
TableCell.pm (dead) No revisions exist on rast_rel_2008_12_18
TaxUtils.pm (dead) No revisions exist on rast_rel_2008_12_18
TetraMap.pm (dead) No revisions exist on rast_rel_2008_12_18
TetraProfile.pm (dead) No revisions exist on rast_rel_2008_12_18
TimeZone.pm (dead) No revisions exist on rast_rel_2008_12_18
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2008_12_18
TraceObject.pm (dead) No revisions exist on rast_rel_2008_12_18
TreeFC.pm (dead) No revisions exist on rast_rel_2008_12_18
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2008_12_18
UpdateServer.pm (dead) No revisions exist on rast_rel_2008_12_18
WriteEMBL.pm (dead) No revisions exist on rast_rel_2008_12_18
WriteGenbank.pm (dead) No revisions exist on rast_rel_2008_12_18
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2008_12_18
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2008_12_18
compare_coding.pm (dead) No revisions exist on rast_rel_2008_12_18
crispr.pm (dead) No revisions exist on rast_rel_2008_12_18
ffxtree.pm (dead) No revisions exist on rast_rel_2008_12_18
find_homologs.pm (dead) No revisions exist on rast_rel_2008_12_18
find_tRNAs.pm (dead) No revisions exist on rast_rel_2008_12_18
gd_tree_0.pm (dead) No revisions exist on rast_rel_2008_12_18
genome_frequencies.pm (dead) No revisions exist on rast_rel_2008_12_18
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2008_12_18
gjoavllib.pm (dead) No revisions exist on rast_rel_2008_12_18
gjocluster.pm (dead) No revisions exist on rast_rel_2008_12_18
gjocodonlib.pm (dead) No revisions exist on rast_rel_2008_12_18
gjocontigmap.pm (dead) No revisions exist on rast_rel_2008_12_18
gjocontigs.pm (dead) No revisions exist on rast_rel_2008_12_18
gjogenbank.pm (dead) No revisions exist on rast_rel_2008_12_18
gjogff.pm (dead) No revisions exist on rast_rel_2008_12_18
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2008_12_18
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2008_12_18
gjostat.pm (dead) No revisions exist on rast_rel_2008_12_18
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2008_12_18
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2008_12_18
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2008_12_18
match_to_axes.pm (dead) No revisions exist on rast_rel_2008_12_18
merge_families.pl (dead) No revisions exist on rast_rel_2008_12_18
overlap_resolution.pm (dead) No revisions exist on rast_rel_2008_12_18
pubmed.tt (dead) No revisions exist on rast_rel_2008_12_18

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