[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.6  11 years  parrello  Changed to avoid an unnecessary creation of the FIG object at load time.
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  11 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.16  11 years  parrello  Fixed a bad URL.
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.738  11 years  bartels  *** empty log message ***
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.7  11 years  paczian  added add_feature and delete_feature
FIGMODEL.pm  1.2  11 years  chenry  Fixing bug in CpdLink function.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.48  11 years  paczian  moved encoded_annotation_to_natural_english to this module to be self contained
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.75  11 years  paczian  find_role_in_org will no longer return deleted fids
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.19  11 years  overbeek  fixes to detecting consistent fragments
FigFam.pm  1.75  11 years  arodri7  updated and corrected sub new
FigFams.pm  1.48  11 years  gdpusch  Added POD block listing the methods within this module.
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.1  11 years  chenry  These modules are for interacting with the modeling database Chris Henry and Mat...
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  11 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  11 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  11 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.3  11 years  olson  Fix database version of GenomeMeta's get_log output to match the old format, so ...
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.11  11 years  olson  attempt at fixing pod2html bug
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  11 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  12 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.15  11 years  paczian  added functional coupling pin
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.113  11 years  dejongh  fix scenario_directory to work for All
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.7  11 years  dejongh  Move get_hope_reactions_for_genome to model.pm
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.7  11 years  parrello  Changed to round floating-point stats to integer values.
Subsystem.pm  1.142  11 years  dejongh  Move get_hope_reactions_for_genome to model.pm
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.7  11 years  parrello  Quoted values in string comparisons to avoid an error when working with sim obje...
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.114  11 years  olson  When tracing CGIs run at the command line, make the tracing code honor the TRACI...
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  12 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  12 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gjoalign2html.pm  1.2  12 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.17  11 years  golsen  Fixed a bug introduced into align_with_clustal() that caused it to return [ id, ...
gjocolorlib.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  11 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.3  11 years  overbeek  updates from Gary
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.26  11 years  dejongh  copy path files instead of linking to them
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  11 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  12 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  11 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  11 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_11_24
ACH.pm (dead) No revisions exist on rast_rel_2008_11_24
ACHserver.pm (dead) No revisions exist on rast_rel_2008_11_24
ALITRE.pm (dead) No revisions exist on rast_rel_2008_11_24
ALITREserver.pm (dead) No revisions exist on rast_rel_2008_11_24
ANNO.pm (dead) No revisions exist on rast_rel_2008_11_24
ANNOserver.pm (dead) No revisions exist on rast_rel_2008_11_24
AT.pm (dead) No revisions exist on rast_rel_2008_11_24
ATserver.pm (dead) No revisions exist on rast_rel_2008_11_24
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2008_11_24
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2008_11_24
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2008_11_24
AliTreeSims.pm (dead) No revisions exist on rast_rel_2008_11_24
AlignTree.pm (dead) No revisions exist on rast_rel_2008_11_24
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2008_11_24
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2008_11_24
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2008_11_24
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2008_11_24
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2008_11_24
BBasicLocation.pm (dead) No revisions exist on rast_rel_2008_11_24
BerkTable.pm (dead) No revisions exist on rast_rel_2008_11_24
Bin.pm (dead) No revisions exist on rast_rel_2008_11_24
BinningReports.pm (dead) No revisions exist on rast_rel_2008_11_24
Biochemistry.pm (dead) No revisions exist on rast_rel_2008_11_24
BlankSVP.pm (dead) No revisions exist on rast_rel_2008_11_24
BlastInterface.pm (dead) No revisions exist on rast_rel_2008_11_24
Boolean.pm (dead) No revisions exist on rast_rel_2008_11_24
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2008_11_24
CO.pm (dead) No revisions exist on rast_rel_2008_11_24
COserver.pm (dead) No revisions exist on rast_rel_2008_11_24
CallBlast.pm (dead) No revisions exist on rast_rel_2008_11_24
CallByProjection.pm (dead) No revisions exist on rast_rel_2008_11_24
CallScanner.pm (dead) No revisions exist on rast_rel_2008_11_24
Category.pm (dead) No revisions exist on rast_rel_2008_11_24
ClientThing.pm (dead) No revisions exist on rast_rel_2008_11_24
CloseGenomes.pm (dead) No revisions exist on rast_rel_2008_11_24
CloseStrains.pm (dead) No revisions exist on rast_rel_2008_11_24
ClusterPairs.pm (dead) No revisions exist on rast_rel_2008_11_24
Clustering.pm (dead) No revisions exist on rast_rel_2008_11_24
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2008_11_24
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2008_11_24
CommonCGI.pm (dead) No revisions exist on rast_rel_2008_11_24
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2008_11_24
Contigs.pm (dead) No revisions exist on rast_rel_2008_11_24
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2008_11_24
Correspondence.pm (dead) No revisions exist on rast_rel_2008_11_24
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2008_11_24
Corresponds.pm (dead) No revisions exist on rast_rel_2008_11_24
CountTransactions.pm (dead) No revisions exist on rast_rel_2008_11_24
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2008_11_24
Dlits.pm (dead) No revisions exist on rast_rel_2008_11_24
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2008_11_24
ErrorMessage.pm (dead) No revisions exist on rast_rel_2008_11_24
EvalCom.pm (dead) No revisions exist on rast_rel_2008_11_24
EvalCon.pm (dead) No revisions exist on rast_rel_2008_11_24
EvalHelper.pm (dead) No revisions exist on rast_rel_2008_11_24
ExpressionDir.pm (dead) No revisions exist on rast_rel_2008_11_24
FBAMODEL.pm (dead) No revisions exist on rast_rel_2008_11_24
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2008_11_24
FBasicLocation.pm (dead) No revisions exist on rast_rel_2008_11_24
FC.pm (dead) No revisions exist on rast_rel_2008_11_24
FFB3.pm (dead) No revisions exist on rast_rel_2008_11_24
FFserver.pm (dead) No revisions exist on rast_rel_2008_11_24
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2008_11_24
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2008_11_24
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2008_11_24
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2008_11_24
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2008_11_24
FIG_Config.pm (dead) No revisions exist on rast_rel_2008_11_24
FIG_Config.py (dead) No revisions exist on rast_rel_2008_11_24
FQUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
FastA.pm (dead) No revisions exist on rast_rel_2008_11_24
FastQ.pm (dead) No revisions exist on rast_rel_2008_11_24
FigSubsystem.pm (dead) No revisions exist on rast_rel_2008_11_24
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2008_11_24
Find_RNAs.pm (dead) No revisions exist on rast_rel_2008_11_24
FixTransactions.pm (dead) No revisions exist on rast_rel_2008_11_24
GEO.pm (dead) No revisions exist on rast_rel_2008_11_24
GPUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2008_11_24
GenerateClusters.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeChecker.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeSelector.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeSet.spec (dead) No revisions exist on rast_rel_2008_11_24
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2008_11_24
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2008_11_24
Hsp.pm (dead) No revisions exist on rast_rel_2008_11_24
IC50.pm (dead) No revisions exist on rast_rel_2008_11_24
IDclient.pm (dead) No revisions exist on rast_rel_2008_11_24
IS_Data.pm (dead) No revisions exist on rast_rel_2008_11_24
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2008_11_24
JulianDay.pm (dead) No revisions exist on rast_rel_2008_11_24
KBASE.pm (dead) No revisions exist on rast_rel_2008_11_24
KBIDUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
KBInvoke.pm (dead) No revisions exist on rast_rel_2008_11_24
KBRpcContext.pm (dead) No revisions exist on rast_rel_2008_11_24
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2008_11_24
KmerClassifier.pm (dead) No revisions exist on rast_rel_2008_11_24
KmerClient.pm (dead) No revisions exist on rast_rel_2008_11_24
KmerDb.pm (dead) No revisions exist on rast_rel_2008_11_24
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2008_11_24
KmerMgr.pm (dead) No revisions exist on rast_rel_2008_11_24
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2008_11_24
Kmers.pm (dead) No revisions exist on rast_rel_2008_11_24
Kmers2013.pm (dead) No revisions exist on rast_rel_2008_11_24
KmersOld.pm (dead) No revisions exist on rast_rel_2008_11_24
LinksUI.pm (dead) No revisions exist on rast_rel_2008_11_24
ListServerScripts.pm (dead) No revisions exist on rast_rel_2008_11_24
MD5Computer.pm (dead) No revisions exist on rast_rel_2008_11_24
MODELserv.pm (dead) No revisions exist on rast_rel_2008_11_24
MODELserv_client.pm (dead) No revisions exist on rast_rel_2008_11_24
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2008_11_24
MapToRef.pm (dead) No revisions exist on rast_rel_2008_11_24
MgRastSims.pm (dead) No revisions exist on rast_rel_2008_11_24
MinimalTracer.pm (dead) No revisions exist on rast_rel_2008_11_24
MissingRoles.pm (dead) No revisions exist on rast_rel_2008_11_24
MoveAliases.pm (dead) No revisions exist on rast_rel_2008_11_24
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2008_11_24
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2008_11_24
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2008_11_24
P3Contigs.pm (dead) No revisions exist on rast_rel_2008_11_24
P3DataAPI.pm (dead) No revisions exist on rast_rel_2008_11_24
P3Sequences.pm (dead) No revisions exist on rast_rel_2008_11_24
P3Signatures.pm (dead) No revisions exist on rast_rel_2008_11_24
P3Utils.pm (dead) No revisions exist on rast_rel_2008_11_24
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2008_11_24
PG.pm (dead) No revisions exist on rast_rel_2008_11_24
ParalogResolution.pm (dead) No revisions exist on rast_rel_2008_11_24
ParseDate.pm (dead) No revisions exist on rast_rel_2008_11_24
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2008_11_24
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2008_11_24
PersistentSets.pm (dead) No revisions exist on rast_rel_2008_11_24
Phage.pm (dead) No revisions exist on rast_rel_2008_11_24
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2008_11_24
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2008_11_24
Prodigal.pm (dead) No revisions exist on rast_rel_2008_11_24
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2008_11_24
ProtFamLite.pm (dead) No revisions exist on rast_rel_2008_11_24
ProtFams.pm (dead) No revisions exist on rast_rel_2008_11_24
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2008_11_24
ProtSims.pm (dead) No revisions exist on rast_rel_2008_11_24
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2008_11_24
RAST_submission.pm (dead) No revisions exist on rast_rel_2008_11_24
RASTlib.pm (dead) No revisions exist on rast_rel_2008_11_24
RASTserver.pm (dead) No revisions exist on rast_rel_2008_11_24
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2008_11_24
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_11_24
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_11_24
ReactionPath.pm (dead) No revisions exist on rast_rel_2008_11_24
RepGenome.pm (dead) No revisions exist on rast_rel_2008_11_24
RiboProtQC.pm (dead) No revisions exist on rast_rel_2008_11_24
RoleParse.pm (dead) No revisions exist on rast_rel_2008_11_24
RoleRule.pm (dead) No revisions exist on rast_rel_2008_11_24
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2008_11_24
SAP.pm (dead) No revisions exist on rast_rel_2008_11_24
SAPserver.pm (dead) No revisions exist on rast_rel_2008_11_24
SAPtutorial.pm (dead) No revisions exist on rast_rel_2008_11_24
SEED.spec (dead) No revisions exist on rast_rel_2008_11_24
SEEDClient.pm (dead) No revisions exist on rast_rel_2008_11_24
SEEDImpl.pm (dead) No revisions exist on rast_rel_2008_11_24
SEEDServer.pm (dead) No revisions exist on rast_rel_2008_11_24
SRAlib.pm (dead) No revisions exist on rast_rel_2008_11_24
SS.pm (dead) No revisions exist on rast_rel_2008_11_24
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_11_24
SSserver.pm (dead) No revisions exist on rast_rel_2008_11_24
SUP.pm (dead) No revisions exist on rast_rel_2008_11_24
SUPserver.pm (dead) No revisions exist on rast_rel_2008_11_24
SampleDir.pm (dead) No revisions exist on rast_rel_2008_11_24
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2008_11_24
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2008_11_24
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2008_11_24
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2008_11_24
ScriptThing.pm (dead) No revisions exist on rast_rel_2008_11_24
ScriptUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedAware.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedEnv.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedHTML.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedSearch.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedSims.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedURLs.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
SeedV.pm (dead) No revisions exist on rast_rel_2008_11_24
SeqStore.pm (dead) No revisions exist on rast_rel_2008_11_24
ServComplex.pm (dead) No revisions exist on rast_rel_2008_11_24
ServFIGfam.pm (dead) No revisions exist on rast_rel_2008_11_24
ServFeature.pm (dead) No revisions exist on rast_rel_2008_11_24
ServGenome.pm (dead) No revisions exist on rast_rel_2008_11_24
ServIndex.pm (dead) No revisions exist on rast_rel_2008_11_24
ServOTU.pm (dead) No revisions exist on rast_rel_2008_11_24
ServReaction.pm (dead) No revisions exist on rast_rel_2008_11_24
ServRole.pm (dead) No revisions exist on rast_rel_2008_11_24
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2008_11_24
ServerScripts.pm (dead) No revisions exist on rast_rel_2008_11_24
ServerThing.pm (dead) No revisions exist on rast_rel_2008_11_24
ServicesUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
Signatures.pm (dead) No revisions exist on rast_rel_2008_11_24
Sim2.pm (dead) No revisions exist on rast_rel_2008_11_24
SimCompute.pm (dead) No revisions exist on rast_rel_2008_11_24
SimFC.pm (dead) No revisions exist on rast_rel_2008_11_24
SimsTable.pm (dead) No revisions exist on rast_rel_2008_11_24
StrepRepeats.pm (dead) No revisions exist on rast_rel_2008_11_24
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2008_11_24
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2008_11_24
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2008_11_24
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
TBLstuff.pm (dead) No revisions exist on rast_rel_2008_11_24
TabFile.pm (dead) No revisions exist on rast_rel_2008_11_24
TableCell.pm (dead) No revisions exist on rast_rel_2008_11_24
TaxUtils.pm (dead) No revisions exist on rast_rel_2008_11_24
TetraMap.pm (dead) No revisions exist on rast_rel_2008_11_24
TetraProfile.pm (dead) No revisions exist on rast_rel_2008_11_24
TimeZone.pm (dead) No revisions exist on rast_rel_2008_11_24
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2008_11_24
TraceObject.pm (dead) No revisions exist on rast_rel_2008_11_24
TreeFC.pm (dead) No revisions exist on rast_rel_2008_11_24
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2008_11_24
UpdateServer.pm (dead) No revisions exist on rast_rel_2008_11_24
WriteEMBL.pm (dead) No revisions exist on rast_rel_2008_11_24
WriteGenbank.pm (dead) No revisions exist on rast_rel_2008_11_24
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2008_11_24
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2008_11_24
compare_coding.pm (dead) No revisions exist on rast_rel_2008_11_24
crispr.pm (dead) No revisions exist on rast_rel_2008_11_24
ffxtree.pm (dead) No revisions exist on rast_rel_2008_11_24
find_homologs.pm (dead) No revisions exist on rast_rel_2008_11_24
find_tRNAs.pm (dead) No revisions exist on rast_rel_2008_11_24
gd_tree_0.pm (dead) No revisions exist on rast_rel_2008_11_24
genome_frequencies.pm (dead) No revisions exist on rast_rel_2008_11_24
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2008_11_24
gjoavllib.pm (dead) No revisions exist on rast_rel_2008_11_24
gjocluster.pm (dead) No revisions exist on rast_rel_2008_11_24
gjocodonlib.pm (dead) No revisions exist on rast_rel_2008_11_24
gjocontigmap.pm (dead) No revisions exist on rast_rel_2008_11_24
gjocontigs.pm (dead) No revisions exist on rast_rel_2008_11_24
gjogenbank.pm (dead) No revisions exist on rast_rel_2008_11_24
gjogff.pm (dead) No revisions exist on rast_rel_2008_11_24
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2008_11_24
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2008_11_24
gjostat.pm (dead) No revisions exist on rast_rel_2008_11_24
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2008_11_24
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2008_11_24
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2008_11_24
match_to_axes.pm (dead) No revisions exist on rast_rel_2008_11_24
merge_families.pl (dead) No revisions exist on rast_rel_2008_11_24
overlap_resolution.pm (dead) No revisions exist on rast_rel_2008_11_24
pubmed.tt (dead) No revisions exist on rast_rel_2008_11_24

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