[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.6  11 years  parrello  Changed to avoid an unnecessary creation of the FIG object at load time.
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.730  11 years  olson  Add FIG.pm caching of all-subsystem data, and use that for subsystem-classificat...
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.2  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
FIGMODEL.pm  1.2  11 years  chenry  Fixing bug in CpdLink function.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.42  11 years  parrello  Fixed bad subsystem call.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.69  11 years  dsouza  peg hash from btree has contig and peg ids as keys -- filter them out in pegs_of...
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.18  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
FigFam.pm  1.75  12 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  12 years  arodri7  Figfams update
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.1  11 years  chenry  These modules are for interacting with the modeling database Chris Henry and Mat...
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.2  11 years  olson  touch the meta file when a change is written to the db.
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  12 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  12 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  12 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.110  11 years  parrello  Changed to fail gracefully if an invalid subsystem ID is passed in to get_subsys...
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.7  11 years  parrello  Changed to round floating-point stats to integer values.
Subsystem.pm  1.139  11 years  parrello  Fixed a bad URL.
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.7  11 years  parrello  Quoted values in string comparisons to avoid an error when working with sim obje...
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.114  11 years  olson  When tracing CGIs run at the command line, make the tracing code honor the TRACI...
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.15  11 years  golsen  Fix FIG dependencies so that it is FIG-aware, but not FIG-dependent.
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  14 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.19  11 years  dejongh  Support for model curation tools
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_10_29
ACH.pm (dead) No revisions exist on rast_rel_2008_10_29
ACHserver.pm (dead) No revisions exist on rast_rel_2008_10_29
ALITRE.pm (dead) No revisions exist on rast_rel_2008_10_29
ALITREserver.pm (dead) No revisions exist on rast_rel_2008_10_29
ANNO.pm (dead) No revisions exist on rast_rel_2008_10_29
ANNOserver.pm (dead) No revisions exist on rast_rel_2008_10_29
AT.pm (dead) No revisions exist on rast_rel_2008_10_29
ATserver.pm (dead) No revisions exist on rast_rel_2008_10_29
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2008_10_29
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2008_10_29
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2008_10_29
AliTreeSims.pm (dead) No revisions exist on rast_rel_2008_10_29
AlignTree.pm (dead) No revisions exist on rast_rel_2008_10_29
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2008_10_29
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2008_10_29
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2008_10_29
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2008_10_29
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2008_10_29
BBasicLocation.pm (dead) No revisions exist on rast_rel_2008_10_29
BerkTable.pm (dead) No revisions exist on rast_rel_2008_10_29
Bin.pm (dead) No revisions exist on rast_rel_2008_10_29
BinningReports.pm (dead) No revisions exist on rast_rel_2008_10_29
Biochemistry.pm (dead) No revisions exist on rast_rel_2008_10_29
BlankSVP.pm (dead) No revisions exist on rast_rel_2008_10_29
BlastInterface.pm (dead) No revisions exist on rast_rel_2008_10_29
Boolean.pm (dead) No revisions exist on rast_rel_2008_10_29
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2008_10_29
CO.pm (dead) No revisions exist on rast_rel_2008_10_29
COserver.pm (dead) No revisions exist on rast_rel_2008_10_29
CallBlast.pm (dead) No revisions exist on rast_rel_2008_10_29
CallByProjection.pm (dead) No revisions exist on rast_rel_2008_10_29
CallScanner.pm (dead) No revisions exist on rast_rel_2008_10_29
Category.pm (dead) No revisions exist on rast_rel_2008_10_29
ClientThing.pm (dead) No revisions exist on rast_rel_2008_10_29
CloseGenomes.pm (dead) No revisions exist on rast_rel_2008_10_29
CloseStrains.pm (dead) No revisions exist on rast_rel_2008_10_29
ClusterPairs.pm (dead) No revisions exist on rast_rel_2008_10_29
Clustering.pm (dead) No revisions exist on rast_rel_2008_10_29
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2008_10_29
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2008_10_29
CommonCGI.pm (dead) No revisions exist on rast_rel_2008_10_29
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2008_10_29
Contigs.pm (dead) No revisions exist on rast_rel_2008_10_29
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2008_10_29
Correspondence.pm (dead) No revisions exist on rast_rel_2008_10_29
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2008_10_29
Corresponds.pm (dead) No revisions exist on rast_rel_2008_10_29
CountTransactions.pm (dead) No revisions exist on rast_rel_2008_10_29
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2008_10_29
Dlits.pm (dead) No revisions exist on rast_rel_2008_10_29
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2008_10_29
ErrorMessage.pm (dead) No revisions exist on rast_rel_2008_10_29
EvalCom.pm (dead) No revisions exist on rast_rel_2008_10_29
EvalCon.pm (dead) No revisions exist on rast_rel_2008_10_29
EvalHelper.pm (dead) No revisions exist on rast_rel_2008_10_29
ExpressionDir.pm (dead) No revisions exist on rast_rel_2008_10_29
FBAMODEL.pm (dead) No revisions exist on rast_rel_2008_10_29
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2008_10_29
FBasicLocation.pm (dead) No revisions exist on rast_rel_2008_10_29
FC.pm (dead) No revisions exist on rast_rel_2008_10_29
FFB3.pm (dead) No revisions exist on rast_rel_2008_10_29
FFserver.pm (dead) No revisions exist on rast_rel_2008_10_29
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2008_10_29
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2008_10_29
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2008_10_29
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2008_10_29
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2008_10_29
FIG_Config.pm (dead) No revisions exist on rast_rel_2008_10_29
FIG_Config.py (dead) No revisions exist on rast_rel_2008_10_29
FQUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
FastA.pm (dead) No revisions exist on rast_rel_2008_10_29
FastQ.pm (dead) No revisions exist on rast_rel_2008_10_29
FigSubsystem.pm (dead) No revisions exist on rast_rel_2008_10_29
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2008_10_29
Find_RNAs.pm (dead) No revisions exist on rast_rel_2008_10_29
FixTransactions.pm (dead) No revisions exist on rast_rel_2008_10_29
GEO.pm (dead) No revisions exist on rast_rel_2008_10_29
GPUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2008_10_29
GenerateClusters.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeChecker.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeSelector.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeSet.spec (dead) No revisions exist on rast_rel_2008_10_29
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2008_10_29
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2008_10_29
Hsp.pm (dead) No revisions exist on rast_rel_2008_10_29
IC50.pm (dead) No revisions exist on rast_rel_2008_10_29
IDclient.pm (dead) No revisions exist on rast_rel_2008_10_29
IS_Data.pm (dead) No revisions exist on rast_rel_2008_10_29
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2008_10_29
JulianDay.pm (dead) No revisions exist on rast_rel_2008_10_29
KBASE.pm (dead) No revisions exist on rast_rel_2008_10_29
KBIDUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
KBInvoke.pm (dead) No revisions exist on rast_rel_2008_10_29
KBRpcContext.pm (dead) No revisions exist on rast_rel_2008_10_29
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2008_10_29
KmerClassifier.pm (dead) No revisions exist on rast_rel_2008_10_29
KmerClient.pm (dead) No revisions exist on rast_rel_2008_10_29
KmerDb.pm (dead) No revisions exist on rast_rel_2008_10_29
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2008_10_29
KmerMgr.pm (dead) No revisions exist on rast_rel_2008_10_29
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2008_10_29
Kmers.pm (dead) No revisions exist on rast_rel_2008_10_29
Kmers2013.pm (dead) No revisions exist on rast_rel_2008_10_29
KmersOld.pm (dead) No revisions exist on rast_rel_2008_10_29
LinksUI.pm (dead) No revisions exist on rast_rel_2008_10_29
ListServerScripts.pm (dead) No revisions exist on rast_rel_2008_10_29
MD5Computer.pm (dead) No revisions exist on rast_rel_2008_10_29
MODELserv.pm (dead) No revisions exist on rast_rel_2008_10_29
MODELserv_client.pm (dead) No revisions exist on rast_rel_2008_10_29
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2008_10_29
MapToRef.pm (dead) No revisions exist on rast_rel_2008_10_29
MgRastSims.pm (dead) No revisions exist on rast_rel_2008_10_29
MinimalTracer.pm (dead) No revisions exist on rast_rel_2008_10_29
MissingRoles.pm (dead) No revisions exist on rast_rel_2008_10_29
MoveAliases.pm (dead) No revisions exist on rast_rel_2008_10_29
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2008_10_29
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2008_10_29
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2008_10_29
OddStarts_ref.pm (dead) No revisions exist on rast_rel_2008_10_29
P3Contigs.pm (dead) No revisions exist on rast_rel_2008_10_29
P3DataAPI.pm (dead) No revisions exist on rast_rel_2008_10_29
P3Sequences.pm (dead) No revisions exist on rast_rel_2008_10_29
P3Signatures.pm (dead) No revisions exist on rast_rel_2008_10_29
P3Utils.pm (dead) No revisions exist on rast_rel_2008_10_29
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2008_10_29
PG.pm (dead) No revisions exist on rast_rel_2008_10_29
ParalogResolution.pm (dead) No revisions exist on rast_rel_2008_10_29
ParseDate.pm (dead) No revisions exist on rast_rel_2008_10_29
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2008_10_29
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2008_10_29
PersistentSets.pm (dead) No revisions exist on rast_rel_2008_10_29
Phage.pm (dead) No revisions exist on rast_rel_2008_10_29
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2008_10_29
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2008_10_29
Prodigal.pm (dead) No revisions exist on rast_rel_2008_10_29
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2008_10_29
ProtFamLite.pm (dead) No revisions exist on rast_rel_2008_10_29
ProtFams.pm (dead) No revisions exist on rast_rel_2008_10_29
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2008_10_29
ProtSims.pm (dead) No revisions exist on rast_rel_2008_10_29
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2008_10_29
RAST_submission.pm (dead) No revisions exist on rast_rel_2008_10_29
RASTlib.pm (dead) No revisions exist on rast_rel_2008_10_29
RASTserver.pm (dead) No revisions exist on rast_rel_2008_10_29
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2008_10_29
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_10_29
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_10_29
ReactionPath.pm (dead) No revisions exist on rast_rel_2008_10_29
RepGenome.pm (dead) No revisions exist on rast_rel_2008_10_29
RiboProtQC.pm (dead) No revisions exist on rast_rel_2008_10_29
RoleParse.pm (dead) No revisions exist on rast_rel_2008_10_29
RoleRule.pm (dead) No revisions exist on rast_rel_2008_10_29
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2008_10_29
SAP.pm (dead) No revisions exist on rast_rel_2008_10_29
SAPserver.pm (dead) No revisions exist on rast_rel_2008_10_29
SAPtutorial.pm (dead) No revisions exist on rast_rel_2008_10_29
SEED.spec (dead) No revisions exist on rast_rel_2008_10_29
SEEDClient.pm (dead) No revisions exist on rast_rel_2008_10_29
SEEDImpl.pm (dead) No revisions exist on rast_rel_2008_10_29
SEEDServer.pm (dead) No revisions exist on rast_rel_2008_10_29
SRAlib.pm (dead) No revisions exist on rast_rel_2008_10_29
SS.pm (dead) No revisions exist on rast_rel_2008_10_29
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_10_29
SSserver.pm (dead) No revisions exist on rast_rel_2008_10_29
SUP.pm (dead) No revisions exist on rast_rel_2008_10_29
SUPserver.pm (dead) No revisions exist on rast_rel_2008_10_29
SampleDir.pm (dead) No revisions exist on rast_rel_2008_10_29
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2008_10_29
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2008_10_29
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2008_10_29
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2008_10_29
ScriptThing.pm (dead) No revisions exist on rast_rel_2008_10_29
ScriptUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedAware.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedEnv.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedHTML.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedSearch.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedSims.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedURLs.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
SeedV.pm (dead) No revisions exist on rast_rel_2008_10_29
SeqStore.pm (dead) No revisions exist on rast_rel_2008_10_29
ServComplex.pm (dead) No revisions exist on rast_rel_2008_10_29
ServFIGfam.pm (dead) No revisions exist on rast_rel_2008_10_29
ServFeature.pm (dead) No revisions exist on rast_rel_2008_10_29
ServGenome.pm (dead) No revisions exist on rast_rel_2008_10_29
ServIndex.pm (dead) No revisions exist on rast_rel_2008_10_29
ServOTU.pm (dead) No revisions exist on rast_rel_2008_10_29
ServReaction.pm (dead) No revisions exist on rast_rel_2008_10_29
ServRole.pm (dead) No revisions exist on rast_rel_2008_10_29
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2008_10_29
ServerScripts.pm (dead) No revisions exist on rast_rel_2008_10_29
ServerThing.pm (dead) No revisions exist on rast_rel_2008_10_29
ServicesUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
Signatures.pm (dead) No revisions exist on rast_rel_2008_10_29
Sim2.pm (dead) No revisions exist on rast_rel_2008_10_29
SimCompute.pm (dead) No revisions exist on rast_rel_2008_10_29
SimFC.pm (dead) No revisions exist on rast_rel_2008_10_29
SimsTable.pm (dead) No revisions exist on rast_rel_2008_10_29
StrepRepeats.pm (dead) No revisions exist on rast_rel_2008_10_29
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2008_10_29
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2008_10_29
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2008_10_29
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
TBLstuff.pm (dead) No revisions exist on rast_rel_2008_10_29
TabFile.pm (dead) No revisions exist on rast_rel_2008_10_29
TableCell.pm (dead) No revisions exist on rast_rel_2008_10_29
TaxUtils.pm (dead) No revisions exist on rast_rel_2008_10_29
TetraMap.pm (dead) No revisions exist on rast_rel_2008_10_29
TetraProfile.pm (dead) No revisions exist on rast_rel_2008_10_29
TimeZone.pm (dead) No revisions exist on rast_rel_2008_10_29
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2008_10_29
TraceObject.pm (dead) No revisions exist on rast_rel_2008_10_29
TreeFC.pm (dead) No revisions exist on rast_rel_2008_10_29
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2008_10_29
UpdateServer.pm (dead) No revisions exist on rast_rel_2008_10_29
WriteEMBL.pm (dead) No revisions exist on rast_rel_2008_10_29
WriteGenbank.pm (dead) No revisions exist on rast_rel_2008_10_29
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2008_10_29
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2008_10_29
compare_coding.pm (dead) No revisions exist on rast_rel_2008_10_29
crispr.pm (dead) No revisions exist on rast_rel_2008_10_29
ffxtree.pm (dead) No revisions exist on rast_rel_2008_10_29
find_homologs.pm (dead) No revisions exist on rast_rel_2008_10_29
find_tRNAs.pm (dead) No revisions exist on rast_rel_2008_10_29
gd_tree_0.pm (dead) No revisions exist on rast_rel_2008_10_29
genome_frequencies.pm (dead) No revisions exist on rast_rel_2008_10_29
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2008_10_29
gjoavllib.pm (dead) No revisions exist on rast_rel_2008_10_29
gjocluster.pm (dead) No revisions exist on rast_rel_2008_10_29
gjocodonlib.pm (dead) No revisions exist on rast_rel_2008_10_29
gjocontigmap.pm (dead) No revisions exist on rast_rel_2008_10_29
gjocontigs.pm (dead) No revisions exist on rast_rel_2008_10_29
gjogenbank.pm (dead) No revisions exist on rast_rel_2008_10_29
gjogff.pm (dead) No revisions exist on rast_rel_2008_10_29
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2008_10_29
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2008_10_29
gjostat.pm (dead) No revisions exist on rast_rel_2008_10_29
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2008_10_29
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2008_10_29
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2008_10_29
match_to_axes.pm (dead) No revisions exist on rast_rel_2008_10_29
merge_families.pl (dead) No revisions exist on rast_rel_2008_10_29
overlap_resolution.pm (dead) No revisions exist on rast_rel_2008_10_29
pubmed.tt (dead) No revisions exist on rast_rel_2008_10_29

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