[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
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tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  13 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.5  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
ComparedRegions.pm  1.6  13 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.724  11 years  overbeek  get rid of warning and update conditionally_assign
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.2  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.41  11 years  disz  New wording in structured english
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.68  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.18  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
FigFam.pm  1.75  12 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  12 years  arodri7  Figfams update
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.2  11 years  olson  touch the meta file when a change is written to the db.
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  12 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  12 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  12 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.108  11 years  parrello  Fixed search to be able to find an organism by name.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.7  11 years  parrello  Changed to round floating-point stats to integer values.
Subsystem.pm  1.137  11 years  bartels  inserted code to save rules and definitions for check variants
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.7  11 years  parrello  Quoted values in string comparisons to avoid an error when working with sim obje...
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.112  11 years  parrello  Added the ability to default to forked mode in StandardSetup.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  12 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.15  11 years  golsen  Fix FIG dependencies so that it is FIG-aware, but not FIG-dependent.
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  14 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  12 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_10_09
ACH.pm (dead) No revisions exist on rast_rel_2008_10_09
ACHserver.pm (dead) No revisions exist on rast_rel_2008_10_09
ALITRE.pm (dead) No revisions exist on rast_rel_2008_10_09
ALITREserver.pm (dead) No revisions exist on rast_rel_2008_10_09
ANNO.pm (dead) No revisions exist on rast_rel_2008_10_09
ANNOserver.pm (dead) No revisions exist on rast_rel_2008_10_09
AT.pm (dead) No revisions exist on rast_rel_2008_10_09
ATserver.pm (dead) No revisions exist on rast_rel_2008_10_09
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2008_10_09
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2008_10_09
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2008_10_09
AliTreeSims.pm (dead) No revisions exist on rast_rel_2008_10_09
AlignTree.pm (dead) No revisions exist on rast_rel_2008_10_09
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2008_10_09
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2008_10_09
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2008_10_09
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2008_10_09
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2008_10_09
BBasicLocation.pm (dead) No revisions exist on rast_rel_2008_10_09
BerkTable.pm (dead) No revisions exist on rast_rel_2008_10_09
Bin.pm (dead) No revisions exist on rast_rel_2008_10_09
BinningReports.pm (dead) No revisions exist on rast_rel_2008_10_09
Biochemistry.pm (dead) No revisions exist on rast_rel_2008_10_09
BlankSVP.pm (dead) No revisions exist on rast_rel_2008_10_09
BlastInterface.pm (dead) No revisions exist on rast_rel_2008_10_09
Boolean.pm (dead) No revisions exist on rast_rel_2008_10_09
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2008_10_09
CO.pm (dead) No revisions exist on rast_rel_2008_10_09
COserver.pm (dead) No revisions exist on rast_rel_2008_10_09
CallBlast.pm (dead) No revisions exist on rast_rel_2008_10_09
CallByProjection.pm (dead) No revisions exist on rast_rel_2008_10_09
CallScanner.pm (dead) No revisions exist on rast_rel_2008_10_09
Category.pm (dead) No revisions exist on rast_rel_2008_10_09
ClientThing.pm (dead) No revisions exist on rast_rel_2008_10_09
CloseGenomes.pm (dead) No revisions exist on rast_rel_2008_10_09
CloseStrains.pm (dead) No revisions exist on rast_rel_2008_10_09
ClusterPairs.pm (dead) No revisions exist on rast_rel_2008_10_09
Clustering.pm (dead) No revisions exist on rast_rel_2008_10_09
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2008_10_09
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2008_10_09
CommonCGI.pm (dead) No revisions exist on rast_rel_2008_10_09
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2008_10_09
Contigs.pm (dead) No revisions exist on rast_rel_2008_10_09
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2008_10_09
Correspondence.pm (dead) No revisions exist on rast_rel_2008_10_09
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2008_10_09
Corresponds.pm (dead) No revisions exist on rast_rel_2008_10_09
CountTransactions.pm (dead) No revisions exist on rast_rel_2008_10_09
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2008_10_09
Dlits.pm (dead) No revisions exist on rast_rel_2008_10_09
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2008_10_09
ErrorMessage.pm (dead) No revisions exist on rast_rel_2008_10_09
EvalCom.pm (dead) No revisions exist on rast_rel_2008_10_09
EvalCon.pm (dead) No revisions exist on rast_rel_2008_10_09
EvalHelper.pm (dead) No revisions exist on rast_rel_2008_10_09
ExpressionDir.pm (dead) No revisions exist on rast_rel_2008_10_09
FBAMODEL.pm (dead) No revisions exist on rast_rel_2008_10_09
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2008_10_09
FBasicLocation.pm (dead) No revisions exist on rast_rel_2008_10_09
FC.pm (dead) No revisions exist on rast_rel_2008_10_09
FFB3.pm (dead) No revisions exist on rast_rel_2008_10_09
FFserver.pm (dead) No revisions exist on rast_rel_2008_10_09
FIGMODEL.pm (dead) No revisions exist on rast_rel_2008_10_09
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2008_10_09
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2008_10_09
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2008_10_09
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2008_10_09
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2008_10_09
FIG_Config.pm (dead) No revisions exist on rast_rel_2008_10_09
FIG_Config.py (dead) No revisions exist on rast_rel_2008_10_09
FQUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
FastA.pm (dead) No revisions exist on rast_rel_2008_10_09
FastQ.pm (dead) No revisions exist on rast_rel_2008_10_09
FigSubsystem.pm (dead) No revisions exist on rast_rel_2008_10_09
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2008_10_09
FileIOFunctions.pm (dead) No revisions exist on rast_rel_2008_10_09
Find_RNAs.pm (dead) No revisions exist on rast_rel_2008_10_09
FixTransactions.pm (dead) No revisions exist on rast_rel_2008_10_09
GEO.pm (dead) No revisions exist on rast_rel_2008_10_09
GPUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2008_10_09
GenerateClusters.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeChecker.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeSelector.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeSet.spec (dead) No revisions exist on rast_rel_2008_10_09
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2008_10_09
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2008_10_09
Hsp.pm (dead) No revisions exist on rast_rel_2008_10_09
IC50.pm (dead) No revisions exist on rast_rel_2008_10_09
IDclient.pm (dead) No revisions exist on rast_rel_2008_10_09
IS_Data.pm (dead) No revisions exist on rast_rel_2008_10_09
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2008_10_09
JulianDay.pm (dead) No revisions exist on rast_rel_2008_10_09
KBASE.pm (dead) No revisions exist on rast_rel_2008_10_09
KBIDUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
KBInvoke.pm (dead) No revisions exist on rast_rel_2008_10_09
KBRpcContext.pm (dead) No revisions exist on rast_rel_2008_10_09
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2008_10_09
KmerClassifier.pm (dead) No revisions exist on rast_rel_2008_10_09
KmerClient.pm (dead) No revisions exist on rast_rel_2008_10_09
KmerDb.pm (dead) No revisions exist on rast_rel_2008_10_09
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2008_10_09
KmerMgr.pm (dead) No revisions exist on rast_rel_2008_10_09
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2008_10_09
Kmers.pm (dead) No revisions exist on rast_rel_2008_10_09
Kmers2013.pm (dead) No revisions exist on rast_rel_2008_10_09
KmersOld.pm (dead) No revisions exist on rast_rel_2008_10_09
LinksUI.pm (dead) No revisions exist on rast_rel_2008_10_09
ListServerScripts.pm (dead) No revisions exist on rast_rel_2008_10_09
MD5Computer.pm (dead) No revisions exist on rast_rel_2008_10_09
MODELserv.pm (dead) No revisions exist on rast_rel_2008_10_09
MODELserv_client.pm (dead) No revisions exist on rast_rel_2008_10_09
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2008_10_09
MapToRef.pm (dead) No revisions exist on rast_rel_2008_10_09
MgRastSims.pm (dead) No revisions exist on rast_rel_2008_10_09
MinimalTracer.pm (dead) No revisions exist on rast_rel_2008_10_09
MissingRoles.pm (dead) No revisions exist on rast_rel_2008_10_09
MoveAliases.pm (dead) No revisions exist on rast_rel_2008_10_09
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2008_10_09
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2008_10_09
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2008_10_09
OddStarts_ref.pm (dead) No revisions exist on rast_rel_2008_10_09
P3Contigs.pm (dead) No revisions exist on rast_rel_2008_10_09
P3DataAPI.pm (dead) No revisions exist on rast_rel_2008_10_09
P3Sequences.pm (dead) No revisions exist on rast_rel_2008_10_09
P3Signatures.pm (dead) No revisions exist on rast_rel_2008_10_09
P3Utils.pm (dead) No revisions exist on rast_rel_2008_10_09
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2008_10_09
PG.pm (dead) No revisions exist on rast_rel_2008_10_09
ParalogResolution.pm (dead) No revisions exist on rast_rel_2008_10_09
ParseDate.pm (dead) No revisions exist on rast_rel_2008_10_09
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2008_10_09
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2008_10_09
PersistentSets.pm (dead) No revisions exist on rast_rel_2008_10_09
Phage.pm (dead) No revisions exist on rast_rel_2008_10_09
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2008_10_09
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2008_10_09
Prodigal.pm (dead) No revisions exist on rast_rel_2008_10_09
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2008_10_09
ProtFamLite.pm (dead) No revisions exist on rast_rel_2008_10_09
ProtFams.pm (dead) No revisions exist on rast_rel_2008_10_09
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2008_10_09
ProtSims.pm (dead) No revisions exist on rast_rel_2008_10_09
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2008_10_09
RAST_submission.pm (dead) No revisions exist on rast_rel_2008_10_09
RASTlib.pm (dead) No revisions exist on rast_rel_2008_10_09
RASTserver.pm (dead) No revisions exist on rast_rel_2008_10_09
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2008_10_09
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_10_09
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_10_09
ReactionPath.pm (dead) No revisions exist on rast_rel_2008_10_09
RepGenome.pm (dead) No revisions exist on rast_rel_2008_10_09
RiboProtQC.pm (dead) No revisions exist on rast_rel_2008_10_09
RoleParse.pm (dead) No revisions exist on rast_rel_2008_10_09
RoleRule.pm (dead) No revisions exist on rast_rel_2008_10_09
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2008_10_09
SAP.pm (dead) No revisions exist on rast_rel_2008_10_09
SAPserver.pm (dead) No revisions exist on rast_rel_2008_10_09
SAPtutorial.pm (dead) No revisions exist on rast_rel_2008_10_09
SEED.spec (dead) No revisions exist on rast_rel_2008_10_09
SEEDClient.pm (dead) No revisions exist on rast_rel_2008_10_09
SEEDImpl.pm (dead) No revisions exist on rast_rel_2008_10_09
SEEDServer.pm (dead) No revisions exist on rast_rel_2008_10_09
SRAlib.pm (dead) No revisions exist on rast_rel_2008_10_09
SS.pm (dead) No revisions exist on rast_rel_2008_10_09
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_10_09
SSserver.pm (dead) No revisions exist on rast_rel_2008_10_09
SUP.pm (dead) No revisions exist on rast_rel_2008_10_09
SUPserver.pm (dead) No revisions exist on rast_rel_2008_10_09
SampleDir.pm (dead) No revisions exist on rast_rel_2008_10_09
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2008_10_09
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2008_10_09
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2008_10_09
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2008_10_09
ScriptThing.pm (dead) No revisions exist on rast_rel_2008_10_09
ScriptUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedAware.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedEnv.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedHTML.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedSearch.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedSims.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedURLs.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
SeedV.pm (dead) No revisions exist on rast_rel_2008_10_09
SeqStore.pm (dead) No revisions exist on rast_rel_2008_10_09
ServComplex.pm (dead) No revisions exist on rast_rel_2008_10_09
ServFIGfam.pm (dead) No revisions exist on rast_rel_2008_10_09
ServFeature.pm (dead) No revisions exist on rast_rel_2008_10_09
ServGenome.pm (dead) No revisions exist on rast_rel_2008_10_09
ServIndex.pm (dead) No revisions exist on rast_rel_2008_10_09
ServOTU.pm (dead) No revisions exist on rast_rel_2008_10_09
ServReaction.pm (dead) No revisions exist on rast_rel_2008_10_09
ServRole.pm (dead) No revisions exist on rast_rel_2008_10_09
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2008_10_09
ServerScripts.pm (dead) No revisions exist on rast_rel_2008_10_09
ServerThing.pm (dead) No revisions exist on rast_rel_2008_10_09
ServicesUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
Signatures.pm (dead) No revisions exist on rast_rel_2008_10_09
Sim2.pm (dead) No revisions exist on rast_rel_2008_10_09
SimCompute.pm (dead) No revisions exist on rast_rel_2008_10_09
SimFC.pm (dead) No revisions exist on rast_rel_2008_10_09
SimsTable.pm (dead) No revisions exist on rast_rel_2008_10_09
StrepRepeats.pm (dead) No revisions exist on rast_rel_2008_10_09
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2008_10_09
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2008_10_09
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2008_10_09
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
TBLstuff.pm (dead) No revisions exist on rast_rel_2008_10_09
TabFile.pm (dead) No revisions exist on rast_rel_2008_10_09
TableCell.pm (dead) No revisions exist on rast_rel_2008_10_09
TaxUtils.pm (dead) No revisions exist on rast_rel_2008_10_09
TetraMap.pm (dead) No revisions exist on rast_rel_2008_10_09
TetraProfile.pm (dead) No revisions exist on rast_rel_2008_10_09
TimeZone.pm (dead) No revisions exist on rast_rel_2008_10_09
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2008_10_09
TraceObject.pm (dead) No revisions exist on rast_rel_2008_10_09
TreeFC.pm (dead) No revisions exist on rast_rel_2008_10_09
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2008_10_09
UpdateServer.pm (dead) No revisions exist on rast_rel_2008_10_09
WriteEMBL.pm (dead) No revisions exist on rast_rel_2008_10_09
WriteGenbank.pm (dead) No revisions exist on rast_rel_2008_10_09
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2008_10_09
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2008_10_09
compare_coding.pm (dead) No revisions exist on rast_rel_2008_10_09
crispr.pm (dead) No revisions exist on rast_rel_2008_10_09
ffxtree.pm (dead) No revisions exist on rast_rel_2008_10_09
find_homologs.pm (dead) No revisions exist on rast_rel_2008_10_09
find_tRNAs.pm (dead) No revisions exist on rast_rel_2008_10_09
gd_tree_0.pm (dead) No revisions exist on rast_rel_2008_10_09
genome_frequencies.pm (dead) No revisions exist on rast_rel_2008_10_09
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2008_10_09
gjoavllib.pm (dead) No revisions exist on rast_rel_2008_10_09
gjocluster.pm (dead) No revisions exist on rast_rel_2008_10_09
gjocodonlib.pm (dead) No revisions exist on rast_rel_2008_10_09
gjocontigmap.pm (dead) No revisions exist on rast_rel_2008_10_09
gjocontigs.pm (dead) No revisions exist on rast_rel_2008_10_09
gjogenbank.pm (dead) No revisions exist on rast_rel_2008_10_09
gjogff.pm (dead) No revisions exist on rast_rel_2008_10_09
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2008_10_09
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2008_10_09
gjostat.pm (dead) No revisions exist on rast_rel_2008_10_09
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2008_10_09
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2008_10_09
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2008_10_09
match_to_axes.pm (dead) No revisions exist on rast_rel_2008_10_09
merge_families.pl (dead) No revisions exist on rast_rel_2008_10_09
overlap_resolution.pm (dead) No revisions exist on rast_rel_2008_10_09
pubmed.tt (dead) No revisions exist on rast_rel_2008_10_09

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