[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.5  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  11 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.724  11 years  overbeek  get rid of warning and update conditionally_assign
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.1  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.41  11 years  disz  New wording in structured english
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.64  11 years  overbeek  support is_deleted_fid and delete_feature in FIGV.pm
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.18  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
FigFam.pm  1.75  11 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  11 years  arodri7  Figfams update
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  11 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  11 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  11 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.2  11 years  olson  touch the meta file when a change is written to the db.
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  11 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  11 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  12 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  11 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.108  11 years  parrello  Fixed search to be able to find an organism by name.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
Stats.pm  1.6  11 years  parrello  Added a method to facilitate periodic tracing.
Subsystem.pm  1.137  11 years  bartels  inserted code to save rules and definitions for check variants
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.6  11 years  parrello  Improved display of undefined and empty strings.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.110  11 years  parrello  Clarified a comment.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  12 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  12 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  12 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.15  11 years  golsen  Fix FIG dependencies so that it is FIG-aware, but not FIG-dependent.
gjocolorlib.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  11 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  13 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  11 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  11 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  12 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  11 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  11 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_09_30
ACH.pm (dead) No revisions exist on rast_rel_2008_09_30
ACHserver.pm (dead) No revisions exist on rast_rel_2008_09_30
ALITRE.pm (dead) No revisions exist on rast_rel_2008_09_30
ALITREserver.pm (dead) No revisions exist on rast_rel_2008_09_30
ANNO.pm (dead) No revisions exist on rast_rel_2008_09_30
ANNOserver.pm (dead) No revisions exist on rast_rel_2008_09_30
AT.pm (dead) No revisions exist on rast_rel_2008_09_30
ATserver.pm (dead) No revisions exist on rast_rel_2008_09_30
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2008_09_30
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2008_09_30
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2008_09_30
AliTreeSims.pm (dead) No revisions exist on rast_rel_2008_09_30
AlignTree.pm (dead) No revisions exist on rast_rel_2008_09_30
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2008_09_30
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2008_09_30
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2008_09_30
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2008_09_30
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2008_09_30
BBasicLocation.pm (dead) No revisions exist on rast_rel_2008_09_30
BerkTable.pm (dead) No revisions exist on rast_rel_2008_09_30
Bin.pm (dead) No revisions exist on rast_rel_2008_09_30
BinningReports.pm (dead) No revisions exist on rast_rel_2008_09_30
Biochemistry.pm (dead) No revisions exist on rast_rel_2008_09_30
BlankSVP.pm (dead) No revisions exist on rast_rel_2008_09_30
BlastInterface.pm (dead) No revisions exist on rast_rel_2008_09_30
Boolean.pm (dead) No revisions exist on rast_rel_2008_09_30
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2008_09_30
CO.pm (dead) No revisions exist on rast_rel_2008_09_30
COserver.pm (dead) No revisions exist on rast_rel_2008_09_30
CallBlast.pm (dead) No revisions exist on rast_rel_2008_09_30
CallByProjection.pm (dead) No revisions exist on rast_rel_2008_09_30
CallScanner.pm (dead) No revisions exist on rast_rel_2008_09_30
Category.pm (dead) No revisions exist on rast_rel_2008_09_30
ClientThing.pm (dead) No revisions exist on rast_rel_2008_09_30
CloseGenomes.pm (dead) No revisions exist on rast_rel_2008_09_30
CloseStrains.pm (dead) No revisions exist on rast_rel_2008_09_30
ClusterPairs.pm (dead) No revisions exist on rast_rel_2008_09_30
Clustering.pm (dead) No revisions exist on rast_rel_2008_09_30
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2008_09_30
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2008_09_30
CommonCGI.pm (dead) No revisions exist on rast_rel_2008_09_30
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2008_09_30
Contigs.pm (dead) No revisions exist on rast_rel_2008_09_30
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2008_09_30
Correspondence.pm (dead) No revisions exist on rast_rel_2008_09_30
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2008_09_30
Corresponds.pm (dead) No revisions exist on rast_rel_2008_09_30
CountTransactions.pm (dead) No revisions exist on rast_rel_2008_09_30
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2008_09_30
Dlits.pm (dead) No revisions exist on rast_rel_2008_09_30
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2008_09_30
ErrorMessage.pm (dead) No revisions exist on rast_rel_2008_09_30
EvalCom.pm (dead) No revisions exist on rast_rel_2008_09_30
EvalCon.pm (dead) No revisions exist on rast_rel_2008_09_30
EvalHelper.pm (dead) No revisions exist on rast_rel_2008_09_30
ExpressionDir.pm (dead) No revisions exist on rast_rel_2008_09_30
FBAMODEL.pm (dead) No revisions exist on rast_rel_2008_09_30
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2008_09_30
FBasicLocation.pm (dead) No revisions exist on rast_rel_2008_09_30
FC.pm (dead) No revisions exist on rast_rel_2008_09_30
FFB3.pm (dead) No revisions exist on rast_rel_2008_09_30
FFserver.pm (dead) No revisions exist on rast_rel_2008_09_30
FIGMODEL.pm (dead) No revisions exist on rast_rel_2008_09_30
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2008_09_30
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2008_09_30
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2008_09_30
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2008_09_30
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2008_09_30
FIG_Config.pm (dead) No revisions exist on rast_rel_2008_09_30
FIG_Config.py (dead) No revisions exist on rast_rel_2008_09_30
FQUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
FastA.pm (dead) No revisions exist on rast_rel_2008_09_30
FastQ.pm (dead) No revisions exist on rast_rel_2008_09_30
FigSubsystem.pm (dead) No revisions exist on rast_rel_2008_09_30
FigSubsystemMaster.pm (dead) No revisions exist on rast_rel_2008_09_30
FileIOFunctions.pm (dead) No revisions exist on rast_rel_2008_09_30
Find_RNAs.pm (dead) No revisions exist on rast_rel_2008_09_30
FixTransactions.pm (dead) No revisions exist on rast_rel_2008_09_30
GEO.pm (dead) No revisions exist on rast_rel_2008_09_30
GPUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2008_09_30
GenerateClusters.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeChecker.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeSelector.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeSet.spec (dead) No revisions exist on rast_rel_2008_09_30
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2008_09_30
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2008_09_30
Hsp.pm (dead) No revisions exist on rast_rel_2008_09_30
IC50.pm (dead) No revisions exist on rast_rel_2008_09_30
IDclient.pm (dead) No revisions exist on rast_rel_2008_09_30
IS_Data.pm (dead) No revisions exist on rast_rel_2008_09_30
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2008_09_30
JulianDay.pm (dead) No revisions exist on rast_rel_2008_09_30
KBASE.pm (dead) No revisions exist on rast_rel_2008_09_30
KBIDUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
KBInvoke.pm (dead) No revisions exist on rast_rel_2008_09_30
KBRpcContext.pm (dead) No revisions exist on rast_rel_2008_09_30
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2008_09_30
KmerClassifier.pm (dead) No revisions exist on rast_rel_2008_09_30
KmerClient.pm (dead) No revisions exist on rast_rel_2008_09_30
KmerDb.pm (dead) No revisions exist on rast_rel_2008_09_30
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2008_09_30
KmerMgr.pm (dead) No revisions exist on rast_rel_2008_09_30
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2008_09_30
Kmers.pm (dead) No revisions exist on rast_rel_2008_09_30
Kmers2013.pm (dead) No revisions exist on rast_rel_2008_09_30
KmersOld.pm (dead) No revisions exist on rast_rel_2008_09_30
LinksUI.pm (dead) No revisions exist on rast_rel_2008_09_30
ListServerScripts.pm (dead) No revisions exist on rast_rel_2008_09_30
MD5Computer.pm (dead) No revisions exist on rast_rel_2008_09_30
MODELserv.pm (dead) No revisions exist on rast_rel_2008_09_30
MODELserv_client.pm (dead) No revisions exist on rast_rel_2008_09_30
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2008_09_30
MapToRef.pm (dead) No revisions exist on rast_rel_2008_09_30
MgRastSims.pm (dead) No revisions exist on rast_rel_2008_09_30
MinimalTracer.pm (dead) No revisions exist on rast_rel_2008_09_30
MissingRoles.pm (dead) No revisions exist on rast_rel_2008_09_30
MoveAliases.pm (dead) No revisions exist on rast_rel_2008_09_30
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2008_09_30
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2008_09_30
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2008_09_30
OddStarts_ref.pm (dead) No revisions exist on rast_rel_2008_09_30
P3Contigs.pm (dead) No revisions exist on rast_rel_2008_09_30
P3DataAPI.pm (dead) No revisions exist on rast_rel_2008_09_30
P3Sequences.pm (dead) No revisions exist on rast_rel_2008_09_30
P3Signatures.pm (dead) No revisions exist on rast_rel_2008_09_30
P3Utils.pm (dead) No revisions exist on rast_rel_2008_09_30
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2008_09_30
PG.pm (dead) No revisions exist on rast_rel_2008_09_30
ParalogResolution.pm (dead) No revisions exist on rast_rel_2008_09_30
ParseDate.pm (dead) No revisions exist on rast_rel_2008_09_30
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2008_09_30
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2008_09_30
PersistentSets.pm (dead) No revisions exist on rast_rel_2008_09_30
Phage.pm (dead) No revisions exist on rast_rel_2008_09_30
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2008_09_30
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2008_09_30
Prodigal.pm (dead) No revisions exist on rast_rel_2008_09_30
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2008_09_30
ProtFamLite.pm (dead) No revisions exist on rast_rel_2008_09_30
ProtFams.pm (dead) No revisions exist on rast_rel_2008_09_30
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2008_09_30
ProtSims.pm (dead) No revisions exist on rast_rel_2008_09_30
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2008_09_30
RAST_submission.pm (dead) No revisions exist on rast_rel_2008_09_30
RASTlib.pm (dead) No revisions exist on rast_rel_2008_09_30
RASTserver.pm (dead) No revisions exist on rast_rel_2008_09_30
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2008_09_30
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_09_30
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_09_30
ReactionPath.pm (dead) No revisions exist on rast_rel_2008_09_30
RepGenome.pm (dead) No revisions exist on rast_rel_2008_09_30
RiboProtQC.pm (dead) No revisions exist on rast_rel_2008_09_30
RoleParse.pm (dead) No revisions exist on rast_rel_2008_09_30
RoleRule.pm (dead) No revisions exist on rast_rel_2008_09_30
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2008_09_30
SAP.pm (dead) No revisions exist on rast_rel_2008_09_30
SAPserver.pm (dead) No revisions exist on rast_rel_2008_09_30
SAPtutorial.pm (dead) No revisions exist on rast_rel_2008_09_30
SEED.spec (dead) No revisions exist on rast_rel_2008_09_30
SEEDClient.pm (dead) No revisions exist on rast_rel_2008_09_30
SEEDImpl.pm (dead) No revisions exist on rast_rel_2008_09_30
SEEDServer.pm (dead) No revisions exist on rast_rel_2008_09_30
SRAlib.pm (dead) No revisions exist on rast_rel_2008_09_30
SS.pm (dead) No revisions exist on rast_rel_2008_09_30
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_09_30
SSserver.pm (dead) No revisions exist on rast_rel_2008_09_30
SUP.pm (dead) No revisions exist on rast_rel_2008_09_30
SUPserver.pm (dead) No revisions exist on rast_rel_2008_09_30
SampleDir.pm (dead) No revisions exist on rast_rel_2008_09_30
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2008_09_30
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2008_09_30
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2008_09_30
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2008_09_30
ScriptThing.pm (dead) No revisions exist on rast_rel_2008_09_30
ScriptUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedAware.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedEnv.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedHTML.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedSearch.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedSims.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedURLs.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
SeedV.pm (dead) No revisions exist on rast_rel_2008_09_30
SeqStore.pm (dead) No revisions exist on rast_rel_2008_09_30
ServComplex.pm (dead) No revisions exist on rast_rel_2008_09_30
ServFIGfam.pm (dead) No revisions exist on rast_rel_2008_09_30
ServFeature.pm (dead) No revisions exist on rast_rel_2008_09_30
ServGenome.pm (dead) No revisions exist on rast_rel_2008_09_30
ServIndex.pm (dead) No revisions exist on rast_rel_2008_09_30
ServOTU.pm (dead) No revisions exist on rast_rel_2008_09_30
ServReaction.pm (dead) No revisions exist on rast_rel_2008_09_30
ServRole.pm (dead) No revisions exist on rast_rel_2008_09_30
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2008_09_30
ServerScripts.pm (dead) No revisions exist on rast_rel_2008_09_30
ServerThing.pm (dead) No revisions exist on rast_rel_2008_09_30
ServicesUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
Signatures.pm (dead) No revisions exist on rast_rel_2008_09_30
Sim2.pm (dead) No revisions exist on rast_rel_2008_09_30
SimCompute.pm (dead) No revisions exist on rast_rel_2008_09_30
SimFC.pm (dead) No revisions exist on rast_rel_2008_09_30
SimsTable.pm (dead) No revisions exist on rast_rel_2008_09_30
StandaloneSims.pm (dead) No revisions exist on rast_rel_2008_09_30
StrepRepeats.pm (dead) No revisions exist on rast_rel_2008_09_30
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2008_09_30
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2008_09_30
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2008_09_30
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
TBLstuff.pm (dead) No revisions exist on rast_rel_2008_09_30
TabFile.pm (dead) No revisions exist on rast_rel_2008_09_30
TableCell.pm (dead) No revisions exist on rast_rel_2008_09_30
TaxUtils.pm (dead) No revisions exist on rast_rel_2008_09_30
TetraMap.pm (dead) No revisions exist on rast_rel_2008_09_30
TetraProfile.pm (dead) No revisions exist on rast_rel_2008_09_30
TimeZone.pm (dead) No revisions exist on rast_rel_2008_09_30
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2008_09_30
TraceObject.pm (dead) No revisions exist on rast_rel_2008_09_30
TreeFC.pm (dead) No revisions exist on rast_rel_2008_09_30
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2008_09_30
UpdateServer.pm (dead) No revisions exist on rast_rel_2008_09_30
WriteEMBL.pm (dead) No revisions exist on rast_rel_2008_09_30
WriteGenbank.pm (dead) No revisions exist on rast_rel_2008_09_30
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2008_09_30
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2008_09_30
compare_coding.pm (dead) No revisions exist on rast_rel_2008_09_30
crispr.pm (dead) No revisions exist on rast_rel_2008_09_30
ffxtree.pm (dead) No revisions exist on rast_rel_2008_09_30
find_homologs.pm (dead) No revisions exist on rast_rel_2008_09_30
find_tRNAs.pm (dead) No revisions exist on rast_rel_2008_09_30
gd_tree_0.pm (dead) No revisions exist on rast_rel_2008_09_30
genome_frequencies.pm (dead) No revisions exist on rast_rel_2008_09_30
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2008_09_30
gjoavllib.pm (dead) No revisions exist on rast_rel_2008_09_30
gjocluster.pm (dead) No revisions exist on rast_rel_2008_09_30
gjocodonlib.pm (dead) No revisions exist on rast_rel_2008_09_30
gjocontigmap.pm (dead) No revisions exist on rast_rel_2008_09_30
gjocontigs.pm (dead) No revisions exist on rast_rel_2008_09_30
gjogenbank.pm (dead) No revisions exist on rast_rel_2008_09_30
gjogff.pm (dead) No revisions exist on rast_rel_2008_09_30
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2008_09_30
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2008_09_30
gjostat.pm (dead) No revisions exist on rast_rel_2008_09_30
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2008_09_30
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2008_09_30
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2008_09_30
match_to_axes.pm (dead) No revisions exist on rast_rel_2008_09_30
merge_families.pl (dead) No revisions exist on rast_rel_2008_09_30
overlap_resolution.pm (dead) No revisions exist on rast_rel_2008_09_30
pubmed.tt (dead) No revisions exist on rast_rel_2008_09_30

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