[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.34  11 years  wilke  readonly flag for reading contrib files/indices
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.16  12 years  overbeek  fix Assignments.pm
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.4  14 years  olson  Added license words.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.4  11 years  dsouza  Changed sort to make more efficient -- was taking very long.
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
CountTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
DBKernel.pm  1.52  11 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.16  11 years  parrello  Revamped to allow more general processing of log files.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.24  11 years  arodri7  added merge figfams functions
FIG.pm  1.713  11 years  parrello  Fixed for sprout compatability.
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.1  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGO.pm  1.33  11 years  gdpusch  Added support for non-installed genome directories. -- /gdp
FIGRules.pm  1.36  11 years  parrello  Fixed for sprout compatability.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.58  11 years  olson  Add some comments, fix perf bug whhere FIG->sims called on an empty list.
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.14  13 years  parrello  Fixed a missing equal sign in the generated HTML.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.17  11 years  overbeek  fixes to grouping
FigFam.pm  1.75  11 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  11 years  arodri7  Figfams update
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FigSubsystem.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
FigSubsystemMaster.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  11 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  11 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  11 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.1  11 years  olson  oops, these need updated.
HTML.pm  1.128  11 years  dsouza  Changed URL for SwissProt, TREMBL and UniProt links.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  11 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.1  11 years  bartels  *** empty log message ***
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  11 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.65  11 years  arodri7  added links for ilits and dlits
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.61  12 years  parrello  Changed POD heading levels.
PHOB.pm  1.14  12 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  11 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.104  11 years  parrello  Added support for to_structured_english.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
Stats.pm  1.6  11 years  parrello  Added a method to facilitate periodic tracing.
Subsystem.pm  1.135  11 years  bartels  *** empty log message ***
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.6  11 years  parrello  Improved display of undefined and empty strings.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.107  11 years  parrello  Fixed Warn to leave $@ intact.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.6  11 years  jared  Corrected typo -jw
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  12 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  12 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  12 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.14  12 years  overbeek  add utilities for computing alignments
gjocolorlib.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  11 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  14 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  11 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  11 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  12 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  11 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  11 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_08_07
ACH.pm (dead) No revisions exist on rast_rel_2008_08_07
ACHserver.pm (dead) No revisions exist on rast_rel_2008_08_07
ALITRE.pm (dead) No revisions exist on rast_rel_2008_08_07
ALITREserver.pm (dead) No revisions exist on rast_rel_2008_08_07
ANNO.pm (dead) No revisions exist on rast_rel_2008_08_07
ANNOserver.pm (dead) No revisions exist on rast_rel_2008_08_07
AT.pm (dead) No revisions exist on rast_rel_2008_08_07
ATserver.pm (dead) No revisions exist on rast_rel_2008_08_07
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2008_08_07
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2008_08_07
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2008_08_07
AliTreeSims.pm (dead) No revisions exist on rast_rel_2008_08_07
AlignTree.pm (dead) No revisions exist on rast_rel_2008_08_07
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2008_08_07
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2008_08_07
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2008_08_07
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2008_08_07
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2008_08_07
BBasicLocation.pm (dead) No revisions exist on rast_rel_2008_08_07
BerkTable.pm (dead) No revisions exist on rast_rel_2008_08_07
Bin.pm (dead) No revisions exist on rast_rel_2008_08_07
BinningReports.pm (dead) No revisions exist on rast_rel_2008_08_07
Biochemistry.pm (dead) No revisions exist on rast_rel_2008_08_07
BlankSVP.pm (dead) No revisions exist on rast_rel_2008_08_07
BlastInterface.pm (dead) No revisions exist on rast_rel_2008_08_07
Boolean.pm (dead) No revisions exist on rast_rel_2008_08_07
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2008_08_07
CO.pm (dead) No revisions exist on rast_rel_2008_08_07
COserver.pm (dead) No revisions exist on rast_rel_2008_08_07
CallBlast.pm (dead) No revisions exist on rast_rel_2008_08_07
CallByProjection.pm (dead) No revisions exist on rast_rel_2008_08_07
CallScanner.pm (dead) No revisions exist on rast_rel_2008_08_07
Category.pm (dead) No revisions exist on rast_rel_2008_08_07
ClientThing.pm (dead) No revisions exist on rast_rel_2008_08_07
CloseGenomes.pm (dead) No revisions exist on rast_rel_2008_08_07
CloseStrains.pm (dead) No revisions exist on rast_rel_2008_08_07
ClusterPairs.pm (dead) No revisions exist on rast_rel_2008_08_07
Clustering.pm (dead) No revisions exist on rast_rel_2008_08_07
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2008_08_07
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2008_08_07
CommonCGI.pm (dead) No revisions exist on rast_rel_2008_08_07
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2008_08_07
Contigs.pm (dead) No revisions exist on rast_rel_2008_08_07
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2008_08_07
Correspondence.pm (dead) No revisions exist on rast_rel_2008_08_07
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2008_08_07
Corresponds.pm (dead) No revisions exist on rast_rel_2008_08_07
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2008_08_07
Dlits.pm (dead) No revisions exist on rast_rel_2008_08_07
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2008_08_07
ErrorMessage.pm (dead) No revisions exist on rast_rel_2008_08_07
EvalCom.pm (dead) No revisions exist on rast_rel_2008_08_07
EvalCon.pm (dead) No revisions exist on rast_rel_2008_08_07
EvalHelper.pm (dead) No revisions exist on rast_rel_2008_08_07
ExpressionDir.pm (dead) No revisions exist on rast_rel_2008_08_07
FBAMODEL.pm (dead) No revisions exist on rast_rel_2008_08_07
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2008_08_07
FBasicLocation.pm (dead) No revisions exist on rast_rel_2008_08_07
FC.pm (dead) No revisions exist on rast_rel_2008_08_07
FFB3.pm (dead) No revisions exist on rast_rel_2008_08_07
FFserver.pm (dead) No revisions exist on rast_rel_2008_08_07
FIGMODEL.pm (dead) No revisions exist on rast_rel_2008_08_07
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2008_08_07
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2008_08_07
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2008_08_07
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2008_08_07
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2008_08_07
FIG_Config.pm (dead) No revisions exist on rast_rel_2008_08_07
FIG_Config.py (dead) No revisions exist on rast_rel_2008_08_07
FQUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
FastA.pm (dead) No revisions exist on rast_rel_2008_08_07
FastQ.pm (dead) No revisions exist on rast_rel_2008_08_07
FileIOFunctions.pm (dead) No revisions exist on rast_rel_2008_08_07
Find_RNAs.pm (dead) No revisions exist on rast_rel_2008_08_07
FixTransactions.pm (dead) No revisions exist on rast_rel_2008_08_07
GEO.pm (dead) No revisions exist on rast_rel_2008_08_07
GPUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2008_08_07
GenerateClusters.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeChecker.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeSelector.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeSet.spec (dead) No revisions exist on rast_rel_2008_08_07
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2008_08_07
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2008_08_07
Hsp.pm (dead) No revisions exist on rast_rel_2008_08_07
IC50.pm (dead) No revisions exist on rast_rel_2008_08_07
IDclient.pm (dead) No revisions exist on rast_rel_2008_08_07
IS_Data.pm (dead) No revisions exist on rast_rel_2008_08_07
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2008_08_07
JulianDay.pm (dead) No revisions exist on rast_rel_2008_08_07
KBASE.pm (dead) No revisions exist on rast_rel_2008_08_07
KBIDUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
KBInvoke.pm (dead) No revisions exist on rast_rel_2008_08_07
KBRpcContext.pm (dead) No revisions exist on rast_rel_2008_08_07
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2008_08_07
KmerClassifier.pm (dead) No revisions exist on rast_rel_2008_08_07
KmerClient.pm (dead) No revisions exist on rast_rel_2008_08_07
KmerDb.pm (dead) No revisions exist on rast_rel_2008_08_07
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2008_08_07
KmerMgr.pm (dead) No revisions exist on rast_rel_2008_08_07
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2008_08_07
Kmers.pm (dead) No revisions exist on rast_rel_2008_08_07
Kmers2013.pm (dead) No revisions exist on rast_rel_2008_08_07
KmersOld.pm (dead) No revisions exist on rast_rel_2008_08_07
LinksUI.pm (dead) No revisions exist on rast_rel_2008_08_07
ListServerScripts.pm (dead) No revisions exist on rast_rel_2008_08_07
MD5Computer.pm (dead) No revisions exist on rast_rel_2008_08_07
MODELserv.pm (dead) No revisions exist on rast_rel_2008_08_07
MODELserv_client.pm (dead) No revisions exist on rast_rel_2008_08_07
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2008_08_07
MapToRef.pm (dead) No revisions exist on rast_rel_2008_08_07
MgRastSims.pm (dead) No revisions exist on rast_rel_2008_08_07
MinimalTracer.pm (dead) No revisions exist on rast_rel_2008_08_07
MissingRoles.pm (dead) No revisions exist on rast_rel_2008_08_07
MoveAliases.pm (dead) No revisions exist on rast_rel_2008_08_07
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2008_08_07
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2008_08_07
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2008_08_07
OddStarts_ref.pm (dead) No revisions exist on rast_rel_2008_08_07
P3Contigs.pm (dead) No revisions exist on rast_rel_2008_08_07
P3DataAPI.pm (dead) No revisions exist on rast_rel_2008_08_07
P3Sequences.pm (dead) No revisions exist on rast_rel_2008_08_07
P3Signatures.pm (dead) No revisions exist on rast_rel_2008_08_07
P3Utils.pm (dead) No revisions exist on rast_rel_2008_08_07
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2008_08_07
PG.pm (dead) No revisions exist on rast_rel_2008_08_07
ParalogResolution.pm (dead) No revisions exist on rast_rel_2008_08_07
ParseDate.pm (dead) No revisions exist on rast_rel_2008_08_07
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2008_08_07
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2008_08_07
PersistentSets.pm (dead) No revisions exist on rast_rel_2008_08_07
Phage.pm (dead) No revisions exist on rast_rel_2008_08_07
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2008_08_07
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2008_08_07
Prodigal.pm (dead) No revisions exist on rast_rel_2008_08_07
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2008_08_07
ProtFamLite.pm (dead) No revisions exist on rast_rel_2008_08_07
ProtFams.pm (dead) No revisions exist on rast_rel_2008_08_07
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2008_08_07
ProtSims.pm (dead) No revisions exist on rast_rel_2008_08_07
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2008_08_07
RAST_submission.pm (dead) No revisions exist on rast_rel_2008_08_07
RASTlib.pm (dead) No revisions exist on rast_rel_2008_08_07
RASTserver.pm (dead) No revisions exist on rast_rel_2008_08_07
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2008_08_07
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_08_07
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_08_07
ReactionPath.pm (dead) No revisions exist on rast_rel_2008_08_07
RepGenome.pm (dead) No revisions exist on rast_rel_2008_08_07
RiboProtQC.pm (dead) No revisions exist on rast_rel_2008_08_07
RoleParse.pm (dead) No revisions exist on rast_rel_2008_08_07
RoleRule.pm (dead) No revisions exist on rast_rel_2008_08_07
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2008_08_07
SAP.pm (dead) No revisions exist on rast_rel_2008_08_07
SAPserver.pm (dead) No revisions exist on rast_rel_2008_08_07
SAPtutorial.pm (dead) No revisions exist on rast_rel_2008_08_07
SEED.spec (dead) No revisions exist on rast_rel_2008_08_07
SEEDClient.pm (dead) No revisions exist on rast_rel_2008_08_07
SEEDImpl.pm (dead) No revisions exist on rast_rel_2008_08_07
SEEDServer.pm (dead) No revisions exist on rast_rel_2008_08_07
SRAlib.pm (dead) No revisions exist on rast_rel_2008_08_07
SS.pm (dead) No revisions exist on rast_rel_2008_08_07
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_08_07
SSserver.pm (dead) No revisions exist on rast_rel_2008_08_07
SUP.pm (dead) No revisions exist on rast_rel_2008_08_07
SUPserver.pm (dead) No revisions exist on rast_rel_2008_08_07
SampleDir.pm (dead) No revisions exist on rast_rel_2008_08_07
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2008_08_07
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2008_08_07
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2008_08_07
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2008_08_07
ScriptThing.pm (dead) No revisions exist on rast_rel_2008_08_07
ScriptUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedAware.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedEnv.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedHTML.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedSearch.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedSims.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedURLs.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
SeedV.pm (dead) No revisions exist on rast_rel_2008_08_07
SeqStore.pm (dead) No revisions exist on rast_rel_2008_08_07
ServComplex.pm (dead) No revisions exist on rast_rel_2008_08_07
ServFIGfam.pm (dead) No revisions exist on rast_rel_2008_08_07
ServFeature.pm (dead) No revisions exist on rast_rel_2008_08_07
ServGenome.pm (dead) No revisions exist on rast_rel_2008_08_07
ServIndex.pm (dead) No revisions exist on rast_rel_2008_08_07
ServOTU.pm (dead) No revisions exist on rast_rel_2008_08_07
ServReaction.pm (dead) No revisions exist on rast_rel_2008_08_07
ServRole.pm (dead) No revisions exist on rast_rel_2008_08_07
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2008_08_07
ServerScripts.pm (dead) No revisions exist on rast_rel_2008_08_07
ServerThing.pm (dead) No revisions exist on rast_rel_2008_08_07
ServicesUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
Signatures.pm (dead) No revisions exist on rast_rel_2008_08_07
Sim2.pm (dead) No revisions exist on rast_rel_2008_08_07
SimCompute.pm (dead) No revisions exist on rast_rel_2008_08_07
SimFC.pm (dead) No revisions exist on rast_rel_2008_08_07
SimsTable.pm (dead) No revisions exist on rast_rel_2008_08_07
StandaloneSims.pm (dead) No revisions exist on rast_rel_2008_08_07
StrepRepeats.pm (dead) No revisions exist on rast_rel_2008_08_07
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2008_08_07
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2008_08_07
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2008_08_07
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
TBLstuff.pm (dead) No revisions exist on rast_rel_2008_08_07
TabFile.pm (dead) No revisions exist on rast_rel_2008_08_07
TableCell.pm (dead) No revisions exist on rast_rel_2008_08_07
TaxUtils.pm (dead) No revisions exist on rast_rel_2008_08_07
TetraMap.pm (dead) No revisions exist on rast_rel_2008_08_07
TetraProfile.pm (dead) No revisions exist on rast_rel_2008_08_07
TimeZone.pm (dead) No revisions exist on rast_rel_2008_08_07
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2008_08_07
TraceObject.pm (dead) No revisions exist on rast_rel_2008_08_07
TreeFC.pm (dead) No revisions exist on rast_rel_2008_08_07
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2008_08_07
UpdateServer.pm (dead) No revisions exist on rast_rel_2008_08_07
WriteEMBL.pm (dead) No revisions exist on rast_rel_2008_08_07
WriteGenbank.pm (dead) No revisions exist on rast_rel_2008_08_07
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2008_08_07
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2008_08_07
compare_coding.pm (dead) No revisions exist on rast_rel_2008_08_07
crispr.pm (dead) No revisions exist on rast_rel_2008_08_07
ffxtree.pm (dead) No revisions exist on rast_rel_2008_08_07
find_homologs.pm (dead) No revisions exist on rast_rel_2008_08_07
find_tRNAs.pm (dead) No revisions exist on rast_rel_2008_08_07
gd_tree_0.pm (dead) No revisions exist on rast_rel_2008_08_07
genome_frequencies.pm (dead) No revisions exist on rast_rel_2008_08_07
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2008_08_07
gjoavllib.pm (dead) No revisions exist on rast_rel_2008_08_07
gjocluster.pm (dead) No revisions exist on rast_rel_2008_08_07
gjocodonlib.pm (dead) No revisions exist on rast_rel_2008_08_07
gjocontigmap.pm (dead) No revisions exist on rast_rel_2008_08_07
gjocontigs.pm (dead) No revisions exist on rast_rel_2008_08_07
gjogenbank.pm (dead) No revisions exist on rast_rel_2008_08_07
gjogff.pm (dead) No revisions exist on rast_rel_2008_08_07
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2008_08_07
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2008_08_07
gjostat.pm (dead) No revisions exist on rast_rel_2008_08_07
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2008_08_07
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2008_08_07
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2008_08_07
match_to_axes.pm (dead) No revisions exist on rast_rel_2008_08_07
merge_families.pl (dead) No revisions exist on rast_rel_2008_08_07
overlap_resolution.pm (dead) No revisions exist on rast_rel_2008_08_07
pubmed.tt (dead) No revisions exist on rast_rel_2008_08_07

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