[Bio] / FigKernelPackages Repository:
ViewVC logotype

Index of /FigKernelPackages

Files shown:389 (Hide 254 dead files)
Sticky Tag:


File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.34  11 years  wilke  readonly flag for reading contrib files/indices
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.16  12 years  overbeek  fix Assignments.pm
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.4  14 years  olson  Added license words.
Clearinghouse.py  1.10  14 years  olson  Added license words.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.4  11 years  dsouza  Changed sort to make more efficient -- was taking very long.
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
CountTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
DBKernel.pm  1.52  11 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.13  11 years  paczian  upgraded maximum unscaled width and height scaling string will now appear over t...
DocUtils.pm  1.16  11 years  parrello  Revamped to allow more general processing of log files.
FF.pm  1.20  11 years  arodri7  updated and corrected sub new
FFs.pm  1.20  11 years  arodri7  update FIGfams
FIG.pm  1.704  11 years  golsen  Improving navigation in the dlits scripts, and improving behavior in the FIG.pm ...
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.1  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGO.pm  1.33  11 years  gdpusch  Added support for non-installed genome directories. -- /gdp
FIGRules.pm  1.33  11 years  parrello  Added load information to the robot trace.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.56  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.14  13 years  parrello  Fixed a missing equal sign in the generated HTML.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.17  11 years  overbeek  fixes to grouping
FigFam.pm  1.75  11 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  11 years  arodri7  Figfams update
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FigSubsystem.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
FigSubsystemMaster.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  11 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  11 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  11 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.1  11 years  olson  oops, these need updated.
HTML.pm  1.126  11 years  arodri7  added alias links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  11 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.1  11 years  bartels  *** empty log message ***
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  11 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.61  11 years  mkubal  added get_attributes method
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.61  12 years  parrello  Changed POD heading levels.
PHOB.pm  1.14  12 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  11 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.103  11 years  parrello  Added some new FIG methods: next-feature, prev-feature, subsystem-version, and a...
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
Stats.pm  1.5  11 years  parrello  Added a new method to rank the statistics.
Subsystem.pm  1.133  11 years  overbeek  minor fixes due to changes to what a genome is
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.5  11 years  parrello  Replaced escapeHTML with the slightly more secure Tracer::Clean.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.107  11 years  parrello  Fixed Warn to leave $@ intact.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.6  11 years  jared  Corrected typo -jw
WikiTools.pm  1.4  11 years  parrello  Added a method that loads a module from the Wiki CPAN stash.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  12 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  12 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  12 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.14  12 years  overbeek  add utilities for computing alignments
gjocolorlib.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  11 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  13 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  11 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  11 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  12 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  11 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  11 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_07_21
ACH.pm (dead) No revisions exist on rast_rel_2008_07_21
ACHserver.pm (dead) No revisions exist on rast_rel_2008_07_21
ALITRE.pm (dead) No revisions exist on rast_rel_2008_07_21
ALITREserver.pm (dead) No revisions exist on rast_rel_2008_07_21
ANNO.pm (dead) No revisions exist on rast_rel_2008_07_21
ANNOserver.pm (dead) No revisions exist on rast_rel_2008_07_21
AT.pm (dead) No revisions exist on rast_rel_2008_07_21
ATserver.pm (dead) No revisions exist on rast_rel_2008_07_21
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_rel_2008_07_21
AdaboostClassify.pm (dead) No revisions exist on rast_rel_2008_07_21
AliTreeIdConvert.pm (dead) No revisions exist on rast_rel_2008_07_21
AliTreeSims.pm (dead) No revisions exist on rast_rel_2008_07_21
AlignTree.pm (dead) No revisions exist on rast_rel_2008_07_21
AlignsAndTrees.pm (dead) No revisions exist on rast_rel_2008_07_21
AlignsAndTreesServer.pm (dead) No revisions exist on rast_rel_2008_07_21
AminoAcidMatrix.pm (dead) No revisions exist on rast_rel_2008_07_21
AnnotateTransactions.pm (dead) No revisions exist on rast_rel_2008_07_21
AttributeTransactions.pm (dead) No revisions exist on rast_rel_2008_07_21
BBasicLocation.pm (dead) No revisions exist on rast_rel_2008_07_21
BerkTable.pm (dead) No revisions exist on rast_rel_2008_07_21
Bin.pm (dead) No revisions exist on rast_rel_2008_07_21
BinningReports.pm (dead) No revisions exist on rast_rel_2008_07_21
Biochemistry.pm (dead) No revisions exist on rast_rel_2008_07_21
BlankSVP.pm (dead) No revisions exist on rast_rel_2008_07_21
BlastInterface.pm (dead) No revisions exist on rast_rel_2008_07_21
Boolean.pm (dead) No revisions exist on rast_rel_2008_07_21
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_rel_2008_07_21
CO.pm (dead) No revisions exist on rast_rel_2008_07_21
COserver.pm (dead) No revisions exist on rast_rel_2008_07_21
CallBlast.pm (dead) No revisions exist on rast_rel_2008_07_21
CallByProjection.pm (dead) No revisions exist on rast_rel_2008_07_21
CallScanner.pm (dead) No revisions exist on rast_rel_2008_07_21
Category.pm (dead) No revisions exist on rast_rel_2008_07_21
ClientThing.pm (dead) No revisions exist on rast_rel_2008_07_21
CloseGenomes.pm (dead) No revisions exist on rast_rel_2008_07_21
CloseStrains.pm (dead) No revisions exist on rast_rel_2008_07_21
ClusterPairs.pm (dead) No revisions exist on rast_rel_2008_07_21
Clustering.pm (dead) No revisions exist on rast_rel_2008_07_21
Cmd2HTML.pm (dead) No revisions exist on rast_rel_2008_07_21
CodonUsageTable.pm (dead) No revisions exist on rast_rel_2008_07_21
CommonCGI.pm (dead) No revisions exist on rast_rel_2008_07_21
ConservedDomainSearch.pm (dead) No revisions exist on rast_rel_2008_07_21
Contigs.pm (dead) No revisions exist on rast_rel_2008_07_21
CorrTableEntry.pm (dead) No revisions exist on rast_rel_2008_07_21
Correspondence.pm (dead) No revisions exist on rast_rel_2008_07_21
CorrespondenceCache.pm (dead) No revisions exist on rast_rel_2008_07_21
Corresponds.pm (dead) No revisions exist on rast_rel_2008_07_21
CrossSeedLinks.pm (dead) No revisions exist on rast_rel_2008_07_21
Dlits.pm (dead) No revisions exist on rast_rel_2008_07_21
DrugResistanceDB.pm (dead) No revisions exist on rast_rel_2008_07_21
ErrorMessage.pm (dead) No revisions exist on rast_rel_2008_07_21
EvalCom.pm (dead) No revisions exist on rast_rel_2008_07_21
EvalCon.pm (dead) No revisions exist on rast_rel_2008_07_21
EvalHelper.pm (dead) No revisions exist on rast_rel_2008_07_21
ExpressionDir.pm (dead) No revisions exist on rast_rel_2008_07_21
FBAMODEL.pm (dead) No revisions exist on rast_rel_2008_07_21
FBAMODELserver.pm (dead) No revisions exist on rast_rel_2008_07_21
FBasicLocation.pm (dead) No revisions exist on rast_rel_2008_07_21
FC.pm (dead) No revisions exist on rast_rel_2008_07_21
FFB3.pm (dead) No revisions exist on rast_rel_2008_07_21
FFserver.pm (dead) No revisions exist on rast_rel_2008_07_21
FIGMODEL.pm (dead) No revisions exist on rast_rel_2008_07_21
FIGMODELObject.pm (dead) No revisions exist on rast_rel_2008_07_21
FIGMODELTable.pm (dead) No revisions exist on rast_rel_2008_07_21
FIGMODELdatabase.pm (dead) No revisions exist on rast_rel_2008_07_21
FIGMODELmodel.pm (dead) No revisions exist on rast_rel_2008_07_21
FIGMODELweb.pm (dead) No revisions exist on rast_rel_2008_07_21
FIG_Config.pm (dead) No revisions exist on rast_rel_2008_07_21
FIG_Config.py (dead) No revisions exist on rast_rel_2008_07_21
FQUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
FastA.pm (dead) No revisions exist on rast_rel_2008_07_21
FastQ.pm (dead) No revisions exist on rast_rel_2008_07_21
FileIOFunctions.pm (dead) No revisions exist on rast_rel_2008_07_21
Find_RNAs.pm (dead) No revisions exist on rast_rel_2008_07_21
FixTransactions.pm (dead) No revisions exist on rast_rel_2008_07_21
GEO.pm (dead) No revisions exist on rast_rel_2008_07_21
GPUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
GenBankToGTO.pm (dead) No revisions exist on rast_rel_2008_07_21
GenerateClusters.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeChecker.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeCodonUsages.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeMetaDatabase.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeSelector.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeSet.spec (dead) No revisions exist on rast_rel_2008_07_21
GenomeSetClient.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeSetImpl.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeSetServer.pm (dead) No revisions exist on rast_rel_2008_07_21
GenomeTypeObject.pm (dead) No revisions exist on rast_rel_2008_07_21
Hsp.pm (dead) No revisions exist on rast_rel_2008_07_21
IC50.pm (dead) No revisions exist on rast_rel_2008_07_21
IDclient.pm (dead) No revisions exist on rast_rel_2008_07_21
IS_Data.pm (dead) No revisions exist on rast_rel_2008_07_21
IS_Subroutines.pm (dead) No revisions exist on rast_rel_2008_07_21
JulianDay.pm (dead) No revisions exist on rast_rel_2008_07_21
KBASE.pm (dead) No revisions exist on rast_rel_2008_07_21
KBIDUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
KBInvoke.pm (dead) No revisions exist on rast_rel_2008_07_21
KBRpcContext.pm (dead) No revisions exist on rast_rel_2008_07_21
KBaseCodonUsage.pm (dead) No revisions exist on rast_rel_2008_07_21
KmerClassifier.pm (dead) No revisions exist on rast_rel_2008_07_21
KmerClient.pm (dead) No revisions exist on rast_rel_2008_07_21
KmerDb.pm (dead) No revisions exist on rast_rel_2008_07_21
KmerGutsNet.pm (dead) No revisions exist on rast_rel_2008_07_21
KmerMgr.pm (dead) No revisions exist on rast_rel_2008_07_21
KmerRepGenomes.pm (dead) No revisions exist on rast_rel_2008_07_21
Kmers.pm (dead) No revisions exist on rast_rel_2008_07_21
Kmers2013.pm (dead) No revisions exist on rast_rel_2008_07_21
KmersOld.pm (dead) No revisions exist on rast_rel_2008_07_21
LinksUI.pm (dead) No revisions exist on rast_rel_2008_07_21
ListServerScripts.pm (dead) No revisions exist on rast_rel_2008_07_21
MD5Computer.pm (dead) No revisions exist on rast_rel_2008_07_21
MODELserv.pm (dead) No revisions exist on rast_rel_2008_07_21
MODELserv_client.pm (dead) No revisions exist on rast_rel_2008_07_21
MSSeedSupport.pm (dead) No revisions exist on rast_rel_2008_07_21
MapToRef.pm (dead) No revisions exist on rast_rel_2008_07_21
MgRastSims.pm (dead) No revisions exist on rast_rel_2008_07_21
MinimalTracer.pm (dead) No revisions exist on rast_rel_2008_07_21
MissingRoles.pm (dead) No revisions exist on rast_rel_2008_07_21
MoveAliases.pm (dead) No revisions exist on rast_rel_2008_07_21
NCBI_sequence.pm (dead) No revisions exist on rast_rel_2008_07_21
NCBI_taxonomy.pm (dead) No revisions exist on rast_rel_2008_07_21
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_rel_2008_07_21
OddStarts_ref.pm (dead) No revisions exist on rast_rel_2008_07_21
P3Contigs.pm (dead) No revisions exist on rast_rel_2008_07_21
P3DataAPI.pm (dead) No revisions exist on rast_rel_2008_07_21
P3Sequences.pm (dead) No revisions exist on rast_rel_2008_07_21
P3Signatures.pm (dead) No revisions exist on rast_rel_2008_07_21
P3Utils.pm (dead) No revisions exist on rast_rel_2008_07_21
P3WorkspaceClient.pm (dead) No revisions exist on rast_rel_2008_07_21
PG.pm (dead) No revisions exist on rast_rel_2008_07_21
ParalogResolution.pm (dead) No revisions exist on rast_rel_2008_07_21
ParseDate.pm (dead) No revisions exist on rast_rel_2008_07_21
ParseSIBEnzyme.pm (dead) No revisions exist on rast_rel_2008_07_21
PartitionSeqs.pm (dead) No revisions exist on rast_rel_2008_07_21
PersistentSets.pm (dead) No revisions exist on rast_rel_2008_07_21
Phage.pm (dead) No revisions exist on rast_rel_2008_07_21
PickFeatureSet.pm (dead) No revisions exist on rast_rel_2008_07_21
PredictTaxonID.pm (dead) No revisions exist on rast_rel_2008_07_21
Prodigal.pm (dead) No revisions exist on rast_rel_2008_07_21
PropagateGBMetadata.pm (dead) No revisions exist on rast_rel_2008_07_21
ProtFamLite.pm (dead) No revisions exist on rast_rel_2008_07_21
ProtFams.pm (dead) No revisions exist on rast_rel_2008_07_21
ProtFamsLite.pm (dead) No revisions exist on rast_rel_2008_07_21
ProtSims.pm (dead) No revisions exist on rast_rel_2008_07_21
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_rel_2008_07_21
RAST_submission.pm (dead) No revisions exist on rast_rel_2008_07_21
RASTlib.pm (dead) No revisions exist on rast_rel_2008_07_21
RASTserver.pm (dead) No revisions exist on rast_rel_2008_07_21
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_rel_2008_07_21
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_07_21
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_rel_2008_07_21
ReactionPath.pm (dead) No revisions exist on rast_rel_2008_07_21
RepGenome.pm (dead) No revisions exist on rast_rel_2008_07_21
RiboProtQC.pm (dead) No revisions exist on rast_rel_2008_07_21
RoleParse.pm (dead) No revisions exist on rast_rel_2008_07_21
RoleRule.pm (dead) No revisions exist on rast_rel_2008_07_21
RoleRuleSubstring.pm (dead) No revisions exist on rast_rel_2008_07_21
SAP.pm (dead) No revisions exist on rast_rel_2008_07_21
SAPserver.pm (dead) No revisions exist on rast_rel_2008_07_21
SAPtutorial.pm (dead) No revisions exist on rast_rel_2008_07_21
SEED.spec (dead) No revisions exist on rast_rel_2008_07_21
SEEDClient.pm (dead) No revisions exist on rast_rel_2008_07_21
SEEDImpl.pm (dead) No revisions exist on rast_rel_2008_07_21
SEEDServer.pm (dead) No revisions exist on rast_rel_2008_07_21
SRAlib.pm (dead) No revisions exist on rast_rel_2008_07_21
SS.pm (dead) No revisions exist on rast_rel_2008_07_21
SSU_rRNA_reps.pm (dead) No revisions exist on rast_rel_2008_07_21
SSserver.pm (dead) No revisions exist on rast_rel_2008_07_21
SUP.pm (dead) No revisions exist on rast_rel_2008_07_21
SUPserver.pm (dead) No revisions exist on rast_rel_2008_07_21
SampleDir.pm (dead) No revisions exist on rast_rel_2008_07_21
SapCompareRegions.pm (dead) No revisions exist on rast_rel_2008_07_21
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_rel_2008_07_21
SaplingCodonUsage.pm (dead) No revisions exist on rast_rel_2008_07_21
SaplingGenomeData.pm (dead) No revisions exist on rast_rel_2008_07_21
ScriptThing.pm (dead) No revisions exist on rast_rel_2008_07_21
ScriptUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedAware.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedCodonUsage.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedEnv.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedHTML.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedSearch.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedSims.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedURLs.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
SeedV.pm (dead) No revisions exist on rast_rel_2008_07_21
SeqStore.pm (dead) No revisions exist on rast_rel_2008_07_21
ServComplex.pm (dead) No revisions exist on rast_rel_2008_07_21
ServFIGfam.pm (dead) No revisions exist on rast_rel_2008_07_21
ServFeature.pm (dead) No revisions exist on rast_rel_2008_07_21
ServGenome.pm (dead) No revisions exist on rast_rel_2008_07_21
ServIndex.pm (dead) No revisions exist on rast_rel_2008_07_21
ServOTU.pm (dead) No revisions exist on rast_rel_2008_07_21
ServReaction.pm (dead) No revisions exist on rast_rel_2008_07_21
ServRole.pm (dead) No revisions exist on rast_rel_2008_07_21
ServSubsysRow.pm (dead) No revisions exist on rast_rel_2008_07_21
ServerScripts.pm (dead) No revisions exist on rast_rel_2008_07_21
ServerThing.pm (dead) No revisions exist on rast_rel_2008_07_21
ServicesUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
Signatures.pm (dead) No revisions exist on rast_rel_2008_07_21
Sim2.pm (dead) No revisions exist on rast_rel_2008_07_21
SimCompute.pm (dead) No revisions exist on rast_rel_2008_07_21
SimFC.pm (dead) No revisions exist on rast_rel_2008_07_21
SimsTable.pm (dead) No revisions exist on rast_rel_2008_07_21
StandaloneSims.pm (dead) No revisions exist on rast_rel_2008_07_21
StrepRepeats.pm (dead) No revisions exist on rast_rel_2008_07_21
SubsystemPrimer.pm (dead) No revisions exist on rast_rel_2008_07_21
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_rel_2008_07_21
SubsystemProjector.pm (dead) No revisions exist on rast_rel_2008_07_21
SwissProtUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
TBLstuff.pm (dead) No revisions exist on rast_rel_2008_07_21
TabFile.pm (dead) No revisions exist on rast_rel_2008_07_21
TableCell.pm (dead) No revisions exist on rast_rel_2008_07_21
TaxUtils.pm (dead) No revisions exist on rast_rel_2008_07_21
TetraMap.pm (dead) No revisions exist on rast_rel_2008_07_21
TetraProfile.pm (dead) No revisions exist on rast_rel_2008_07_21
TimeZone.pm (dead) No revisions exist on rast_rel_2008_07_21
Tpn_Int_Reps.pm (dead) No revisions exist on rast_rel_2008_07_21
TraceObject.pm (dead) No revisions exist on rast_rel_2008_07_21
TreeFC.pm (dead) No revisions exist on rast_rel_2008_07_21
Universal_Seqs.pm (dead) No revisions exist on rast_rel_2008_07_21
UpdateServer.pm (dead) No revisions exist on rast_rel_2008_07_21
WriteEMBL.pm (dead) No revisions exist on rast_rel_2008_07_21
WriteGenbank.pm (dead) No revisions exist on rast_rel_2008_07_21
align_and_tree_test.pm (dead) No revisions exist on rast_rel_2008_07_21
bidir_best_hits.pm (dead) No revisions exist on rast_rel_2008_07_21
compare_coding.pm (dead) No revisions exist on rast_rel_2008_07_21
crispr.pm (dead) No revisions exist on rast_rel_2008_07_21
ffxtree.pm (dead) No revisions exist on rast_rel_2008_07_21
find_homologs.pm (dead) No revisions exist on rast_rel_2008_07_21
find_tRNAs.pm (dead) No revisions exist on rast_rel_2008_07_21
gd_tree_0.pm (dead) No revisions exist on rast_rel_2008_07_21
genome_frequencies.pm (dead) No revisions exist on rast_rel_2008_07_21
gjoalignandtree.pm (dead) No revisions exist on rast_rel_2008_07_21
gjoavllib.pm (dead) No revisions exist on rast_rel_2008_07_21
gjocluster.pm (dead) No revisions exist on rast_rel_2008_07_21
gjocodonlib.pm (dead) No revisions exist on rast_rel_2008_07_21
gjocontigmap.pm (dead) No revisions exist on rast_rel_2008_07_21
gjocontigs.pm (dead) No revisions exist on rast_rel_2008_07_21
gjogenbank.pm (dead) No revisions exist on rast_rel_2008_07_21
gjogff.pm (dead) No revisions exist on rast_rel_2008_07_21
gjonativecodonlib.pm (dead) No revisions exist on rast_rel_2008_07_21
gjosegmentlib.pm (dead) No revisions exist on rast_rel_2008_07_21
gjostat.pm (dead) No revisions exist on rast_rel_2008_07_21
high_expression_ref_ab.pm (dead) No revisions exist on rast_rel_2008_07_21
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_rel_2008_07_21
make_subsys_based_families.pl (dead) No revisions exist on rast_rel_2008_07_21
match_to_axes.pm (dead) No revisions exist on rast_rel_2008_07_21
merge_families.pl (dead) No revisions exist on rast_rel_2008_07_21
overlap_resolution.pm (dead) No revisions exist on rast_rel_2008_07_21
pubmed.tt (dead) No revisions exist on rast_rel_2008_07_21

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3