[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
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tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.5  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.724  11 years  overbeek  get rid of warning and update conditionally_assign
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.1  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.41  11 years  disz  New wording in structured english
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.62  11 years  paczian  RAST genomes now always compute the pegs for subsystems on the fly (ignoring the...
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.18  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
FigFam.pm  1.75  12 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  12 years  arodri7  Figfams update
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.2  11 years  olson  touch the meta file when a change is written to the db.
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  12 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  12 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  12 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.108  11 years  parrello  Fixed search to be able to find an organism by name.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
Stats.pm  1.6  11 years  parrello  Added a method to facilitate periodic tracing.
Subsystem.pm  1.136  11 years  olson  Add support for $fig->change_funcrole()
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.6  11 years  parrello  Improved display of undefined and empty strings.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.110  11 years  parrello  Clarified a comment.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.15  11 years  golsen  Fix FIG dependencies so that it is FIG-aware, but not FIG-dependent.
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  14 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  12 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on rast_2008_0924
ACH.pm (dead) No revisions exist on rast_2008_0924
ACHserver.pm (dead) No revisions exist on rast_2008_0924
ALITRE.pm (dead) No revisions exist on rast_2008_0924
ALITREserver.pm (dead) No revisions exist on rast_2008_0924
ANNO.pm (dead) No revisions exist on rast_2008_0924
ANNOserver.pm (dead) No revisions exist on rast_2008_0924
AT.pm (dead) No revisions exist on rast_2008_0924
ATserver.pm (dead) No revisions exist on rast_2008_0924
AdaboostClassifierAMRv1.pm (dead) No revisions exist on rast_2008_0924
AdaboostClassify.pm (dead) No revisions exist on rast_2008_0924
AliTreeIdConvert.pm (dead) No revisions exist on rast_2008_0924
AliTreeSims.pm (dead) No revisions exist on rast_2008_0924
AlignTree.pm (dead) No revisions exist on rast_2008_0924
AlignsAndTrees.pm (dead) No revisions exist on rast_2008_0924
AlignsAndTreesServer.pm (dead) No revisions exist on rast_2008_0924
AminoAcidMatrix.pm (dead) No revisions exist on rast_2008_0924
AnnotateTransactions.pm (dead) No revisions exist on rast_2008_0924
AttributeTransactions.pm (dead) No revisions exist on rast_2008_0924
BBasicLocation.pm (dead) No revisions exist on rast_2008_0924
BerkTable.pm (dead) No revisions exist on rast_2008_0924
Bin.pm (dead) No revisions exist on rast_2008_0924
BinningReports.pm (dead) No revisions exist on rast_2008_0924
Biochemistry.pm (dead) No revisions exist on rast_2008_0924
BlankSVP.pm (dead) No revisions exist on rast_2008_0924
BlastInterface.pm (dead) No revisions exist on rast_2008_0924
Boolean.pm (dead) No revisions exist on rast_2008_0924
CGIAlignTreeViewer.pm (dead) No revisions exist on rast_2008_0924
CO.pm (dead) No revisions exist on rast_2008_0924
COserver.pm (dead) No revisions exist on rast_2008_0924
CallBlast.pm (dead) No revisions exist on rast_2008_0924
CallByProjection.pm (dead) No revisions exist on rast_2008_0924
CallScanner.pm (dead) No revisions exist on rast_2008_0924
Category.pm (dead) No revisions exist on rast_2008_0924
ClientThing.pm (dead) No revisions exist on rast_2008_0924
CloseGenomes.pm (dead) No revisions exist on rast_2008_0924
CloseStrains.pm (dead) No revisions exist on rast_2008_0924
ClusterPairs.pm (dead) No revisions exist on rast_2008_0924
Clustering.pm (dead) No revisions exist on rast_2008_0924
Cmd2HTML.pm (dead) No revisions exist on rast_2008_0924
CodonUsageTable.pm (dead) No revisions exist on rast_2008_0924
CommonCGI.pm (dead) No revisions exist on rast_2008_0924
ConservedDomainSearch.pm (dead) No revisions exist on rast_2008_0924
Contigs.pm (dead) No revisions exist on rast_2008_0924
CorrTableEntry.pm (dead) No revisions exist on rast_2008_0924
Correspondence.pm (dead) No revisions exist on rast_2008_0924
CorrespondenceCache.pm (dead) No revisions exist on rast_2008_0924
Corresponds.pm (dead) No revisions exist on rast_2008_0924
CountTransactions.pm (dead) No revisions exist on rast_2008_0924
CrossSeedLinks.pm (dead) No revisions exist on rast_2008_0924
Dlits.pm (dead) No revisions exist on rast_2008_0924
DrugResistanceDB.pm (dead) No revisions exist on rast_2008_0924
ErrorMessage.pm (dead) No revisions exist on rast_2008_0924
EvalCom.pm (dead) No revisions exist on rast_2008_0924
EvalCon.pm (dead) No revisions exist on rast_2008_0924
EvalHelper.pm (dead) No revisions exist on rast_2008_0924
ExpressionDir.pm (dead) No revisions exist on rast_2008_0924
FBAMODEL.pm (dead) No revisions exist on rast_2008_0924
FBAMODELserver.pm (dead) No revisions exist on rast_2008_0924
FBasicLocation.pm (dead) No revisions exist on rast_2008_0924
FC.pm (dead) No revisions exist on rast_2008_0924
FFB3.pm (dead) No revisions exist on rast_2008_0924
FFserver.pm (dead) No revisions exist on rast_2008_0924
FIGMODEL.pm (dead) No revisions exist on rast_2008_0924
FIGMODELObject.pm (dead) No revisions exist on rast_2008_0924
FIGMODELTable.pm (dead) No revisions exist on rast_2008_0924
FIGMODELdatabase.pm (dead) No revisions exist on rast_2008_0924
FIGMODELmodel.pm (dead) No revisions exist on rast_2008_0924
FIGMODELweb.pm (dead) No revisions exist on rast_2008_0924
FIG_Config.pm (dead) No revisions exist on rast_2008_0924
FIG_Config.py (dead) No revisions exist on rast_2008_0924
FQUtils.pm (dead) No revisions exist on rast_2008_0924
FastA.pm (dead) No revisions exist on rast_2008_0924
FastQ.pm (dead) No revisions exist on rast_2008_0924
FigSubsystem.pm (dead) No revisions exist on rast_2008_0924
FigSubsystemMaster.pm (dead) No revisions exist on rast_2008_0924
FileIOFunctions.pm (dead) No revisions exist on rast_2008_0924
Find_RNAs.pm (dead) No revisions exist on rast_2008_0924
FixTransactions.pm (dead) No revisions exist on rast_2008_0924
GEO.pm (dead) No revisions exist on rast_2008_0924
GPUtils.pm (dead) No revisions exist on rast_2008_0924
GenBankToGTO.pm (dead) No revisions exist on rast_2008_0924
GenerateClusters.pm (dead) No revisions exist on rast_2008_0924
GenomeChecker.pm (dead) No revisions exist on rast_2008_0924
GenomeCodonUsages.pm (dead) No revisions exist on rast_2008_0924
GenomeMetaDatabase.pm (dead) No revisions exist on rast_2008_0924
GenomeSelector.pm (dead) No revisions exist on rast_2008_0924
GenomeSet.spec (dead) No revisions exist on rast_2008_0924
GenomeSetClient.pm (dead) No revisions exist on rast_2008_0924
GenomeSetImpl.pm (dead) No revisions exist on rast_2008_0924
GenomeSetServer.pm (dead) No revisions exist on rast_2008_0924
GenomeTypeObject.pm (dead) No revisions exist on rast_2008_0924
Hsp.pm (dead) No revisions exist on rast_2008_0924
IC50.pm (dead) No revisions exist on rast_2008_0924
IDclient.pm (dead) No revisions exist on rast_2008_0924
IS_Data.pm (dead) No revisions exist on rast_2008_0924
IS_Subroutines.pm (dead) No revisions exist on rast_2008_0924
JulianDay.pm (dead) No revisions exist on rast_2008_0924
KBASE.pm (dead) No revisions exist on rast_2008_0924
KBIDUtils.pm (dead) No revisions exist on rast_2008_0924
KBInvoke.pm (dead) No revisions exist on rast_2008_0924
KBRpcContext.pm (dead) No revisions exist on rast_2008_0924
KBaseCodonUsage.pm (dead) No revisions exist on rast_2008_0924
KmerClassifier.pm (dead) No revisions exist on rast_2008_0924
KmerClient.pm (dead) No revisions exist on rast_2008_0924
KmerDb.pm (dead) No revisions exist on rast_2008_0924
KmerGutsNet.pm (dead) No revisions exist on rast_2008_0924
KmerMgr.pm (dead) No revisions exist on rast_2008_0924
KmerRepGenomes.pm (dead) No revisions exist on rast_2008_0924
Kmers.pm (dead) No revisions exist on rast_2008_0924
Kmers2013.pm (dead) No revisions exist on rast_2008_0924
KmersOld.pm (dead) No revisions exist on rast_2008_0924
LinksUI.pm (dead) No revisions exist on rast_2008_0924
ListServerScripts.pm (dead) No revisions exist on rast_2008_0924
MD5Computer.pm (dead) No revisions exist on rast_2008_0924
MODELserv.pm (dead) No revisions exist on rast_2008_0924
MODELserv_client.pm (dead) No revisions exist on rast_2008_0924
MSSeedSupport.pm (dead) No revisions exist on rast_2008_0924
MapToRef.pm (dead) No revisions exist on rast_2008_0924
MgRastSims.pm (dead) No revisions exist on rast_2008_0924
MinimalTracer.pm (dead) No revisions exist on rast_2008_0924
MissingRoles.pm (dead) No revisions exist on rast_2008_0924
MoveAliases.pm (dead) No revisions exist on rast_2008_0924
NCBI_sequence.pm (dead) No revisions exist on rast_2008_0924
NCBI_taxonomy.pm (dead) No revisions exist on rast_2008_0924
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on rast_2008_0924
OddStarts_ref.pm (dead) No revisions exist on rast_2008_0924
P3Contigs.pm (dead) No revisions exist on rast_2008_0924
P3DataAPI.pm (dead) No revisions exist on rast_2008_0924
P3Sequences.pm (dead) No revisions exist on rast_2008_0924
P3Signatures.pm (dead) No revisions exist on rast_2008_0924
P3Utils.pm (dead) No revisions exist on rast_2008_0924
P3WorkspaceClient.pm (dead) No revisions exist on rast_2008_0924
PG.pm (dead) No revisions exist on rast_2008_0924
ParalogResolution.pm (dead) No revisions exist on rast_2008_0924
ParseDate.pm (dead) No revisions exist on rast_2008_0924
ParseSIBEnzyme.pm (dead) No revisions exist on rast_2008_0924
PartitionSeqs.pm (dead) No revisions exist on rast_2008_0924
PersistentSets.pm (dead) No revisions exist on rast_2008_0924
Phage.pm (dead) No revisions exist on rast_2008_0924
PickFeatureSet.pm (dead) No revisions exist on rast_2008_0924
PredictTaxonID.pm (dead) No revisions exist on rast_2008_0924
Prodigal.pm (dead) No revisions exist on rast_2008_0924
PropagateGBMetadata.pm (dead) No revisions exist on rast_2008_0924
ProtFamLite.pm (dead) No revisions exist on rast_2008_0924
ProtFams.pm (dead) No revisions exist on rast_2008_0924
ProtFamsLite.pm (dead) No revisions exist on rast_2008_0924
ProtSims.pm (dead) No revisions exist on rast_2008_0924
Prot_reps_drug_resistance.pm (dead) No revisions exist on rast_2008_0924
RAST_submission.pm (dead) No revisions exist on rast_2008_0924
RASTlib.pm (dead) No revisions exist on rast_2008_0924
RASTserver.pm (dead) No revisions exist on rast_2008_0924
RNA_reps_5S_rRNA.pm (dead) No revisions exist on rast_2008_0924
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on rast_2008_0924
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on rast_2008_0924
ReactionPath.pm (dead) No revisions exist on rast_2008_0924
RepGenome.pm (dead) No revisions exist on rast_2008_0924
RiboProtQC.pm (dead) No revisions exist on rast_2008_0924
RoleParse.pm (dead) No revisions exist on rast_2008_0924
RoleRule.pm (dead) No revisions exist on rast_2008_0924
RoleRuleSubstring.pm (dead) No revisions exist on rast_2008_0924
SAP.pm (dead) No revisions exist on rast_2008_0924
SAPserver.pm (dead) No revisions exist on rast_2008_0924
SAPtutorial.pm (dead) No revisions exist on rast_2008_0924
SEED.spec (dead) No revisions exist on rast_2008_0924
SEEDClient.pm (dead) No revisions exist on rast_2008_0924
SEEDImpl.pm (dead) No revisions exist on rast_2008_0924
SEEDServer.pm (dead) No revisions exist on rast_2008_0924
SRAlib.pm (dead) No revisions exist on rast_2008_0924
SS.pm (dead) No revisions exist on rast_2008_0924
SSU_rRNA_reps.pm (dead) No revisions exist on rast_2008_0924
SSserver.pm (dead) No revisions exist on rast_2008_0924
SUP.pm (dead) No revisions exist on rast_2008_0924
SUPserver.pm (dead) No revisions exist on rast_2008_0924
SampleDir.pm (dead) No revisions exist on rast_2008_0924
SapCompareRegions.pm (dead) No revisions exist on rast_2008_0924
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on rast_2008_0924
SaplingCodonUsage.pm (dead) No revisions exist on rast_2008_0924
SaplingGenomeData.pm (dead) No revisions exist on rast_2008_0924
ScriptThing.pm (dead) No revisions exist on rast_2008_0924
ScriptUtils.pm (dead) No revisions exist on rast_2008_0924
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on rast_2008_0924
SeedAware.pm (dead) No revisions exist on rast_2008_0924
SeedCodonUsage.pm (dead) No revisions exist on rast_2008_0924
SeedCodonUsageToKBase.pm (dead) No revisions exist on rast_2008_0924
SeedEnv.pm (dead) No revisions exist on rast_2008_0924
SeedHTML.pm (dead) No revisions exist on rast_2008_0924
SeedSearch.pm (dead) No revisions exist on rast_2008_0924
SeedSims.pm (dead) No revisions exist on rast_2008_0924
SeedURLs.pm (dead) No revisions exist on rast_2008_0924
SeedUtils.pm (dead) No revisions exist on rast_2008_0924
SeedV.pm (dead) No revisions exist on rast_2008_0924
SeqStore.pm (dead) No revisions exist on rast_2008_0924
ServComplex.pm (dead) No revisions exist on rast_2008_0924
ServFIGfam.pm (dead) No revisions exist on rast_2008_0924
ServFeature.pm (dead) No revisions exist on rast_2008_0924
ServGenome.pm (dead) No revisions exist on rast_2008_0924
ServIndex.pm (dead) No revisions exist on rast_2008_0924
ServOTU.pm (dead) No revisions exist on rast_2008_0924
ServReaction.pm (dead) No revisions exist on rast_2008_0924
ServRole.pm (dead) No revisions exist on rast_2008_0924
ServSubsysRow.pm (dead) No revisions exist on rast_2008_0924
ServerScripts.pm (dead) No revisions exist on rast_2008_0924
ServerThing.pm (dead) No revisions exist on rast_2008_0924
ServicesUtils.pm (dead) No revisions exist on rast_2008_0924
Signatures.pm (dead) No revisions exist on rast_2008_0924
Sim2.pm (dead) No revisions exist on rast_2008_0924
SimCompute.pm (dead) No revisions exist on rast_2008_0924
SimFC.pm (dead) No revisions exist on rast_2008_0924
SimsTable.pm (dead) No revisions exist on rast_2008_0924
StandaloneSims.pm (dead) No revisions exist on rast_2008_0924
StrepRepeats.pm (dead) No revisions exist on rast_2008_0924
SubsystemPrimer.pm (dead) No revisions exist on rast_2008_0924
SubsystemPrimer2SS.pm (dead) No revisions exist on rast_2008_0924
SubsystemProjector.pm (dead) No revisions exist on rast_2008_0924
SwissProtUtils.pm (dead) No revisions exist on rast_2008_0924
TBLstuff.pm (dead) No revisions exist on rast_2008_0924
TabFile.pm (dead) No revisions exist on rast_2008_0924
TableCell.pm (dead) No revisions exist on rast_2008_0924
TaxUtils.pm (dead) No revisions exist on rast_2008_0924
TetraMap.pm (dead) No revisions exist on rast_2008_0924
TetraProfile.pm (dead) No revisions exist on rast_2008_0924
TimeZone.pm (dead) No revisions exist on rast_2008_0924
Tpn_Int_Reps.pm (dead) No revisions exist on rast_2008_0924
TraceObject.pm (dead) No revisions exist on rast_2008_0924
TreeFC.pm (dead) No revisions exist on rast_2008_0924
Universal_Seqs.pm (dead) No revisions exist on rast_2008_0924
UpdateServer.pm (dead) No revisions exist on rast_2008_0924
WriteEMBL.pm (dead) No revisions exist on rast_2008_0924
WriteGenbank.pm (dead) No revisions exist on rast_2008_0924
align_and_tree_test.pm (dead) No revisions exist on rast_2008_0924
bidir_best_hits.pm (dead) No revisions exist on rast_2008_0924
compare_coding.pm (dead) No revisions exist on rast_2008_0924
crispr.pm (dead) No revisions exist on rast_2008_0924
ffxtree.pm (dead) No revisions exist on rast_2008_0924
find_homologs.pm (dead) No revisions exist on rast_2008_0924
find_tRNAs.pm (dead) No revisions exist on rast_2008_0924
gd_tree_0.pm (dead) No revisions exist on rast_2008_0924
genome_frequencies.pm (dead) No revisions exist on rast_2008_0924
gjoalignandtree.pm (dead) No revisions exist on rast_2008_0924
gjoavllib.pm (dead) No revisions exist on rast_2008_0924
gjocluster.pm (dead) No revisions exist on rast_2008_0924
gjocodonlib.pm (dead) No revisions exist on rast_2008_0924
gjocontigmap.pm (dead) No revisions exist on rast_2008_0924
gjocontigs.pm (dead) No revisions exist on rast_2008_0924
gjogenbank.pm (dead) No revisions exist on rast_2008_0924
gjogff.pm (dead) No revisions exist on rast_2008_0924
gjonativecodonlib.pm (dead) No revisions exist on rast_2008_0924
gjosegmentlib.pm (dead) No revisions exist on rast_2008_0924
gjostat.pm (dead) No revisions exist on rast_2008_0924
high_expression_ref_ab.pm (dead) No revisions exist on rast_2008_0924
make_close_strain_family_tabs.pl (dead) No revisions exist on rast_2008_0924
make_subsys_based_families.pl (dead) No revisions exist on rast_2008_0924
match_to_axes.pm (dead) No revisions exist on rast_2008_0924
merge_families.pl (dead) No revisions exist on rast_2008_0924
overlap_resolution.pm (dead) No revisions exist on rast_2008_0924
pubmed.tt (dead) No revisions exist on rast_2008_0924

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