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File Rev. Age Author Last log entry
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ACH.pm  1.7  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
ACHserver.pm  1.16  10 years  parrello  Removed from the SAS distribution.
ANNO.pm  1.9  9 years  parrello  Fixed missing method problem.
ANNOserver.pm  1.20  9 years  parrello  Fixed a POD error.
AT.pm  1.6  8 years  fangfang  add blast function
ATserver.pm  1.2  9 years  fangfang  default url set to biobig
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTreeSims.pm  1.3  8 years  fangfang  improved performance for ffxtree::distances_from_tip, 0.15s for tree with 4000 t...
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.11  9 years  parrello  Updates for single-genome loader.
AlignTree.pm  1.32  8 years  fangfang  update
AnnoClearinghouse.pm  1.44  10 years  wilke  Modified sql query to ? syntax
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.19  10 years  parrello  Updated to Sapling Server for Berkeley.
BerkTable.pm  1.2  9 years  olson  fix arg
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
CO.pm  1.6  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
COPYING.TXT  1.1  14 years  olson  add license file
COserver.pm  1.13  10 years  parrello  Removed from the SAS distribution.
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClientThing.pm  1.20  8 years  olson  Flip default to PUBSEED. Add support for compressed encodings.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
Clustering.pm  1.6  9 years  overbeek  added double and triple linkage
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  10 years  overbeek  new Contigs.pm and compare_coding.pm
CorrTableEntry.pm  1.4  9 years  olson  Add num_matching_functions for column 19
Correspondence.pm  1.4  9 years  overbeek  correct the identity check
CorrespondenceCache.pm  1.2  9 years  parrello  Added experiment filter to "fid_experiments". Fixed correspondence cache to work...
DBKernel.pm  1.65  9 years  olson  Caching / FCGI speedup modifications.
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.19  9 years  redwards  fixing jpeg images
DocUtils.pm  1.18  10 years  parrello  Added documentation functions to the Sapling server.
ErrorMessage.pm  1.2  9 years  olson  remove unused use CGI.
ExpressionDir.pm  1.9  9 years  overbeek  added Pearson coeff stuff
FC.pm  1.21  10 years  parrello  Fixed a bug in "co_occurrence_evidence".
FF.pm  1.35  9 years  disz  FigFam 6 digit fix
FFs.pm  1.49  9 years  olson  Clean up errors.
FFserver.pm  1.23  10 years  parrello  Removed from the SAS distribution.
FIG.pm  1.834  9 years  olson  add DESTROY methods to the cache objects so that shutdown doesn't trigger a cach...
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  10 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.18  9 years  olson  Add FIGV and FIGM function_of_bulk
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.54  10 years  olson  Optimize to_structured_english.
FIGStatisticalModels.pm  1.7  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.96  9 years  gdpusch  Modified to gracefully handle Organism directories with no or empty Subsystems/ ...
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.35  9 years  overbeek  minor updates
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.4  9 years  olson  Changes for DesktopRast. CVHnS: ------------------------------------------------...
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.25  10 years  parrello  Added a method to compute the total location length.
GenoGraphics.pm  1.24  10 years  golsen  Back pedal on the attempt to diagnose jpeg and png availability in GenoGraphics
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.16  10 years  olson  Add lock retries; probably not needed now that I think I've fixed FileLocking bu...
GenomeMetaDB.pm  1.5  10 years  jared  added update_path
GenomeMetaDatabase.pm  1.1  10 years  jared  *** empty log message ***
HTML.pm  1.130  10 years  arodri7  added links to set_prot_links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.10  8 years  olson  Put. The Scheduler. Back.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
Kmers.pm  1.28  9 years  olson  fix off-by-one
KmersOld.pm  1.1  10 years  olson  version of Kmers.pm before the argument changes; made to go with figfam_server_2...
ListServerScripts.pm  1.1  9 years  parrello  Added to support server script listing.
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.13  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
MgRastSims.pm  1.1  10 years  redwards  a new package for getting sims for the mg-rast
MinimalTracer.pm  1.1  9 years  olson  More FS_RAST modes & supporting code for SAS use.
NCBI_genetic_code.pm  1.3  9 years  olson  add SAS header
NCBI_taxonomy.pm  1.4  9 years  golsen  Add more formats in which abbreviated lineages can be returned. Add long form of...
NRTools.pm  1.4  10 years  olson  update to new metadata standard
NewGenome.pm  1.80  10 years  parrello  Protected a "new FIG" in open code with an eval. THIS MUST BE FIXED.
Observation.pm  1.83  9 years  redwards  correcting web links
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.15  10 years  overbeek  switch from clustalw to muscle
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
ParalogResolution.pm  1.5  10 years  golsen  Modifications to support line-drawing character set in tree printer plots.
PartitionSeqs.pm  1.3  10 years  overbeek  return either scalar or list
Phage.pm  1.3  9 years  redwards  minor correction
PickFeatureSet.pm  1.2  10 years  overbeek  add .html to HTML files
PinnedRegions.pm  1.34  9 years  olson  fix unlink here too
ProtFamLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  10 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtSims.pm  1.19  9 years  overbeek  turn off debugging print
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RAST_submission.pm  1.28  9 years  olson  typofix
RASTserver.pm  1.23  9 years  gdpusch  Fixed bugs in and added more support for Viral and Euk jobs.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SAP.pm  1.150  8 years  parrello  Update to expressed_genomes. Turned off activity warnings.
SAPserver.pm  1.14  9 years  parrello  Support for local SQLite servers.
SAPtutorial.pm  1.10  10 years  parrello  Fixed some errors in examples of ID types.
SFXlate.pm  1.119  10 years  parrello  Added "families_containing_peg".
SS.pm  1.13  10 years  parrello  More documentation cleanup.
SSU_rRNA_reps.pm  1.3  9 years  golsen  Adjust end of one reference sequence by padding it slightly.
SSserver.pm  1.17  10 years  parrello  Removed from the SAS distribution.
SUP.pm  1.2  9 years  parrello  New methods for alignment data.
SUPserver.pm  1.1  9 years  parrello  New Sapling update support.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
SampleDir.pm  1.4  9 years  olson  More analysis fixes; user-agent setting.
SapCompareRegions.pm  1.3  9 years  olson  Change to output format; outer hash with fid => results, rows are now hashes wit...
Scenario.pm  1.10  9 years  dejongh  change scenario handling to use path_info.txt
ScriptThing.pm  1.8  9 years  parrello  Expression vector support methods.
SeedAware.pm  1.6  9 years  golsen  Add a path search function to executable_for(), so that it returns undef if the ...
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedEnv.pm  1.4  9 years  olson  Use new path to FBAModelSerer
SeedHTML.pm  1.3  10 years  olson  More distro fixes.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
SeedUtils.pm  1.60  9 years  parrello  Adjustments to loader utilities.
SeedV.pm  1.9  9 years  gdpusch  Changed a debugging line to print to STDERR, not STDOUT; print only if VERBOSE.
ServerScripts.pm  1.5  9 years  overbeek  add summarize_MG_output
ServerThing.pm  1.71  8 years  olson  Make STDERR stay local for FCGI
Signatures.pm  1.2  9 years  parrello  Various POD fixes.
Sim.pm  1.14  10 years  olson  Distro fixups
Sim2.pm  1.1  8 years  overbeek  tree sims
SimFC.pm  1.3  10 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.8  10 years  parrello  Added a method to extract saved messages.
Subsystem.pm  1.149  9 years  olson  Subsystem speedup fixes.
TBLstuff.pm  1.2  10 years  overbeek  minor fixes
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.11  10 years  parrello  Fixed display glitch for pure white space.
ToCall.pm  1.11  10 years  gdpusch  Major rewrite to prevent already-found PEGs from being re-called by every stage ...
Tracer.pm  1.132  9 years  parrello  Added an option to display configuration data to the command-line setup utility....
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.16  9 years  paczian  re-added circle color scheme
WikiTools.pm  1.8  10 years  parrello  Fixed a glitch in list rendering.
WriteGenbank.pm  1.2  9 years  gdpusch  Forgot trailing "1;" :(
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.3  10 years  golsen  New super duper ala Peter T. Hooper paralog resolution interface.
collect_related_sequences.pm  1.6  9 years  golsen  Update to use SeedAware.pm (and do some general clean-up).
compare_coding.pm  1.10  9 years  golsen  Integrate use of SeedAware.pm
display_related_genomes.pm  1.2  9 years  golsen  Minor documentation changes in code.
fastDNAml.pm  1.2  14 years  olson  Added license words.
ffxtree.pm  1.20  8 years  fangfang  improved performance for distances_from_tip, 0.15s for trees with 4000 tips
find_homologs.pm  1.4  9 years  golsen  use SeedAware Many changes in details of code.
find_special_proteins.pm  1.12  9 years  olson  typod the declaration
gd_tree_0.pm  1.5  9 years  golsen  Extensive reworking of color management.
gjoalign2html.pm  1.5  9 years  fangfang  SAS component
gjoalignandtree.pm  1.16  9 years  golsen  Minor consistency improvements in options, and remove redundancy in getting the ...
gjoalignment.pm  1.36  9 years  golsen  Cleaner handling of external binary programs.
gjocodonlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjocolorlib.pm  1.7  9 years  golsen  Added support for luma (HSY color definitions). Changed all code so that html co...
gjogenbank.pm  1.8  9 years  golsen  Changes to fix some bugs in GenBank format reading and writing. Changes to deal ...
gjogff.pm  1.2  9 years  golsen  Changes to fix some bugs in GenBank format reading and writing. Changes to deal ...
gjolib.pm  1.3  10 years  olson  Add more modules to the SAS toolkit.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonativecodonlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjonewicklib.pm  1.25  9 years  golsen  Change behavior of reroot_tree() to ignore distance if there is only one node.
gjoparseblast.pm  1.8  9 years  golsen  Fix two minor typographical errors in the documentation.
gjophylip.pm  1.9  9 years  golsen  Fix a cosmetic issue in the cleaning of sequences for PHYLIP.
gjosegmentlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjoseqlib.pm  1.25  9 years  golsen  Just some additions to the function descriptions.
gjostat.pm  1.3  9 years  golsen  Convert die to confess.
model.pm  1.36  9 years  dejongh  change scenario handling to use path_info.txt
proml.pm  1.9  10 years  golsen  Minor updates to SEED awareness.
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.45  9 years  redwards  adding a pegs in order method (should probably be in FIG.pm cos way useful)
representative_sequences.pm  1.18  9 years  golsen  Huge restructuring of the rep_seq() and rep_seq2() functions. Better performanc...
selenoprotein_ref_seq.pm  1.5  10 years  golsen  Add some reference sequences and replace ; with @ in functions.
set_utilities.pm  1.3  10 years  overbeek  make SAS components
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.20  10 years  olson  Add more modules to the SAS toolkit.
5S_rRNA_reps.pm (dead) No revisions exist on mgrast_release_3_0_2
ALITRE.pm (dead) No revisions exist on mgrast_release_3_0_2
ALITREserver.pm (dead) No revisions exist on mgrast_release_3_0_2
AdaboostClassifierAMRv1.pm (dead) No revisions exist on mgrast_release_3_0_2
AdaboostClassify.pm (dead) No revisions exist on mgrast_release_3_0_2
AliTreeIdConvert.pm (dead) No revisions exist on mgrast_release_3_0_2
AlignsAndTrees.pm (dead) No revisions exist on mgrast_release_3_0_2
AlignsAndTreesServer.pm (dead) No revisions exist on mgrast_release_3_0_2
AminoAcidMatrix.pm (dead) No revisions exist on mgrast_release_3_0_2
AnnotateTransactions.pm (dead) No revisions exist on mgrast_release_3_0_2
AttributeTransactions.pm (dead) No revisions exist on mgrast_release_3_0_2
BBasicLocation.pm (dead) No revisions exist on mgrast_release_3_0_2
Bin.pm (dead) No revisions exist on mgrast_release_3_0_2
BinningReports.pm (dead) No revisions exist on mgrast_release_3_0_2
Biochemistry.pm (dead) No revisions exist on mgrast_release_3_0_2
BlankSVP.pm (dead) No revisions exist on mgrast_release_3_0_2
BlastInterface.pm (dead) No revisions exist on mgrast_release_3_0_2
Boolean.pm (dead) No revisions exist on mgrast_release_3_0_2
CGIAlignTreeViewer.pm (dead) No revisions exist on mgrast_release_3_0_2
CallBlast.pm (dead) No revisions exist on mgrast_release_3_0_2
CallByProjection.pm (dead) No revisions exist on mgrast_release_3_0_2
CallScanner.pm (dead) No revisions exist on mgrast_release_3_0_2
Category.pm (dead) No revisions exist on mgrast_release_3_0_2
CloseGenomes.pm (dead) No revisions exist on mgrast_release_3_0_2
CloseStrains.pm (dead) No revisions exist on mgrast_release_3_0_2
ClusterPairs.pm (dead) No revisions exist on mgrast_release_3_0_2
Cmd2HTML.pm (dead) No revisions exist on mgrast_release_3_0_2
CodonUsageTable.pm (dead) No revisions exist on mgrast_release_3_0_2
CommonCGI.pm (dead) No revisions exist on mgrast_release_3_0_2
ConservedDomainSearch.pm (dead) No revisions exist on mgrast_release_3_0_2
Corresponds.pm (dead) No revisions exist on mgrast_release_3_0_2
CountTransactions.pm (dead) No revisions exist on mgrast_release_3_0_2
CrossSeedLinks.pm (dead) No revisions exist on mgrast_release_3_0_2
Dlits.pm (dead) No revisions exist on mgrast_release_3_0_2
DrugResistanceDB.pm (dead) No revisions exist on mgrast_release_3_0_2
EvalCom.pm (dead) No revisions exist on mgrast_release_3_0_2
EvalCon.pm (dead) No revisions exist on mgrast_release_3_0_2
EvalHelper.pm (dead) No revisions exist on mgrast_release_3_0_2
FBAMODEL.pm (dead) No revisions exist on mgrast_release_3_0_2
FBAMODELserver.pm (dead) No revisions exist on mgrast_release_3_0_2
FBasicLocation.pm (dead) No revisions exist on mgrast_release_3_0_2
FFB3.pm (dead) No revisions exist on mgrast_release_3_0_2
FIGMODEL.pm (dead) No revisions exist on mgrast_release_3_0_2
FIGMODELObject.pm (dead) No revisions exist on mgrast_release_3_0_2
FIGMODELTable.pm (dead) No revisions exist on mgrast_release_3_0_2
FIGMODELdatabase.pm (dead) No revisions exist on mgrast_release_3_0_2
FIGMODELmodel.pm (dead) No revisions exist on mgrast_release_3_0_2
FIGMODELweb.pm (dead) No revisions exist on mgrast_release_3_0_2
FIG_Config.pm (dead) No revisions exist on mgrast_release_3_0_2
FIG_Config.py (dead) No revisions exist on mgrast_release_3_0_2
FQUtils.pm (dead) No revisions exist on mgrast_release_3_0_2
FastA.pm (dead) No revisions exist on mgrast_release_3_0_2
FastQ.pm (dead) No revisions exist on mgrast_release_3_0_2
FigFam.pm (dead) No revisions exist on mgrast_release_3_0_2
FigFams.pm (dead) No revisions exist on mgrast_release_3_0_2
FigSubsystem.pm (dead) No revisions exist on mgrast_release_3_0_2
FigSubsystemMaster.pm (dead) No revisions exist on mgrast_release_3_0_2
FileIOFunctions.pm (dead) No revisions exist on mgrast_release_3_0_2
Find_RNAs.pm (dead) No revisions exist on mgrast_release_3_0_2
FixTransactions.pm (dead) No revisions exist on mgrast_release_3_0_2
GEO.pm (dead) No revisions exist on mgrast_release_3_0_2
GPUtils.pm (dead) No revisions exist on mgrast_release_3_0_2
GenBankToGTO.pm (dead) No revisions exist on mgrast_release_3_0_2
GenerateClusters.pm (dead) No revisions exist on mgrast_release_3_0_2
GenomeChecker.pm (dead) No revisions exist on mgrast_release_3_0_2
GenomeCodonUsages.pm (dead) No revisions exist on mgrast_release_3_0_2
GenomeSelector.pm (dead) No revisions exist on mgrast_release_3_0_2
GenomeSet.spec (dead) No revisions exist on mgrast_release_3_0_2
GenomeSetClient.pm (dead) No revisions exist on mgrast_release_3_0_2
GenomeSetImpl.pm (dead) No revisions exist on mgrast_release_3_0_2
GenomeSetServer.pm (dead) No revisions exist on mgrast_release_3_0_2
GenomeTypeObject.pm (dead) No revisions exist on mgrast_release_3_0_2
Hsp.pm (dead) No revisions exist on mgrast_release_3_0_2
IC50.pm (dead) No revisions exist on mgrast_release_3_0_2
IDclient.pm (dead) No revisions exist on mgrast_release_3_0_2
IS_Data.pm (dead) No revisions exist on mgrast_release_3_0_2
IS_Subroutines.pm (dead) No revisions exist on mgrast_release_3_0_2
JulianDay.pm (dead) No revisions exist on mgrast_release_3_0_2
KBASE.pm (dead) No revisions exist on mgrast_release_3_0_2
KBIDUtils.pm (dead) No revisions exist on mgrast_release_3_0_2
KBInvoke.pm (dead) No revisions exist on mgrast_release_3_0_2
KBRpcContext.pm (dead) No revisions exist on mgrast_release_3_0_2
KBaseCodonUsage.pm (dead) No revisions exist on mgrast_release_3_0_2
KmerClassifier.pm (dead) No revisions exist on mgrast_release_3_0_2
KmerClient.pm (dead) No revisions exist on mgrast_release_3_0_2
KmerDb.pm (dead) No revisions exist on mgrast_release_3_0_2
KmerGutsNet.pm (dead) No revisions exist on mgrast_release_3_0_2
KmerMgr.pm (dead) No revisions exist on mgrast_release_3_0_2
KmerRepGenomes.pm (dead) No revisions exist on mgrast_release_3_0_2
Kmers2013.pm (dead) No revisions exist on mgrast_release_3_0_2
LinksUI.pm (dead) No revisions exist on mgrast_release_3_0_2
MD5Computer.pm (dead) No revisions exist on mgrast_release_3_0_2
MODELserv.pm (dead) No revisions exist on mgrast_release_3_0_2
MODELserv_client.pm (dead) No revisions exist on mgrast_release_3_0_2
MSSeedSupport.pm (dead) No revisions exist on mgrast_release_3_0_2
MapToRef.pm (dead) No revisions exist on mgrast_release_3_0_2
MissingRoles.pm (dead) No revisions exist on mgrast_release_3_0_2
MoveAliases.pm (dead) No revisions exist on mgrast_release_3_0_2
NCBI_sequence.pm (dead) No revisions exist on mgrast_release_3_0_2
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on mgrast_release_3_0_2
P3Contigs.pm (dead) No revisions exist on mgrast_release_3_0_2
P3DataAPI.pm (dead) No revisions exist on mgrast_release_3_0_2
P3Sequences.pm (dead) No revisions exist on mgrast_release_3_0_2
P3Signatures.pm (dead) No revisions exist on mgrast_release_3_0_2
P3Utils.pm (dead) No revisions exist on mgrast_release_3_0_2
P3WorkspaceClient.pm (dead) No revisions exist on mgrast_release_3_0_2
PG.pm (dead) No revisions exist on mgrast_release_3_0_2
ParseDate.pm (dead) No revisions exist on mgrast_release_3_0_2
ParseSIBEnzyme.pm (dead) No revisions exist on mgrast_release_3_0_2
PersistentSets.pm (dead) No revisions exist on mgrast_release_3_0_2
PredictTaxonID.pm (dead) No revisions exist on mgrast_release_3_0_2
Prodigal.pm (dead) No revisions exist on mgrast_release_3_0_2
PropagateGBMetadata.pm (dead) No revisions exist on mgrast_release_3_0_2
Prot_reps_drug_resistance.pm (dead) No revisions exist on mgrast_release_3_0_2
RASTlib.pm (dead) No revisions exist on mgrast_release_3_0_2
RNA_reps_5S_rRNA.pm (dead) No revisions exist on mgrast_release_3_0_2
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on mgrast_release_3_0_2
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on mgrast_release_3_0_2
ReactionPath.pm (dead) No revisions exist on mgrast_release_3_0_2
RepGenome.pm (dead) No revisions exist on mgrast_release_3_0_2
RiboProtQC.pm (dead) No revisions exist on mgrast_release_3_0_2
RoleParse.pm (dead) No revisions exist on mgrast_release_3_0_2
RoleRule.pm (dead) No revisions exist on mgrast_release_3_0_2
RoleRuleSubstring.pm (dead) No revisions exist on mgrast_release_3_0_2
SEED.spec (dead) No revisions exist on mgrast_release_3_0_2
SEEDClient.pm (dead) No revisions exist on mgrast_release_3_0_2
SEEDImpl.pm (dead) No revisions exist on mgrast_release_3_0_2
SEEDServer.pm (dead) No revisions exist on mgrast_release_3_0_2
SRAlib.pm (dead) No revisions exist on mgrast_release_3_0_2
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on mgrast_release_3_0_2
SaplingCodonUsage.pm (dead) No revisions exist on mgrast_release_3_0_2
SaplingGenomeData.pm (dead) No revisions exist on mgrast_release_3_0_2
ScriptUtils.pm (dead) No revisions exist on mgrast_release_3_0_2
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on mgrast_release_3_0_2
SeedCodonUsage.pm (dead) No revisions exist on mgrast_release_3_0_2
SeedCodonUsageToKBase.pm (dead) No revisions exist on mgrast_release_3_0_2
SeedSearch.pm (dead) No revisions exist on mgrast_release_3_0_2
SeedURLs.pm (dead) No revisions exist on mgrast_release_3_0_2
SeqStore.pm (dead) No revisions exist on mgrast_release_3_0_2
ServComplex.pm (dead) No revisions exist on mgrast_release_3_0_2
ServFIGfam.pm (dead) No revisions exist on mgrast_release_3_0_2
ServFeature.pm (dead) No revisions exist on mgrast_release_3_0_2
ServGenome.pm (dead) No revisions exist on mgrast_release_3_0_2
ServIndex.pm (dead) No revisions exist on mgrast_release_3_0_2
ServOTU.pm (dead) No revisions exist on mgrast_release_3_0_2
ServReaction.pm (dead) No revisions exist on mgrast_release_3_0_2
ServRole.pm (dead) No revisions exist on mgrast_release_3_0_2
ServSubsysRow.pm (dead) No revisions exist on mgrast_release_3_0_2
ServicesUtils.pm (dead) No revisions exist on mgrast_release_3_0_2
SimCompute.pm (dead) No revisions exist on mgrast_release_3_0_2
SimsTable.pm (dead) No revisions exist on mgrast_release_3_0_2
StrepRepeats.pm (dead) No revisions exist on mgrast_release_3_0_2
SubsystemPrimer.pm (dead) No revisions exist on mgrast_release_3_0_2
SubsystemPrimer2SS.pm (dead) No revisions exist on mgrast_release_3_0_2
SubsystemProjector.pm (dead) No revisions exist on mgrast_release_3_0_2
SwissProtUtils.pm (dead) No revisions exist on mgrast_release_3_0_2
TabFile.pm (dead) No revisions exist on mgrast_release_3_0_2
TableCell.pm (dead) No revisions exist on mgrast_release_3_0_2
TaxUtils.pm (dead) No revisions exist on mgrast_release_3_0_2
TetraMap.pm (dead) No revisions exist on mgrast_release_3_0_2
TetraProfile.pm (dead) No revisions exist on mgrast_release_3_0_2
TimeZone.pm (dead) No revisions exist on mgrast_release_3_0_2
Tpn_Int_Reps.pm (dead) No revisions exist on mgrast_release_3_0_2
TraceObject.pm (dead) No revisions exist on mgrast_release_3_0_2
TreeFC.pm (dead) No revisions exist on mgrast_release_3_0_2
Universal_Seqs.pm (dead) No revisions exist on mgrast_release_3_0_2
UpdateServer.pm (dead) No revisions exist on mgrast_release_3_0_2
WriteEMBL.pm (dead) No revisions exist on mgrast_release_3_0_2
align_and_tree_test.pm (dead) No revisions exist on mgrast_release_3_0_2
bidir_best_hits.pm (dead) No revisions exist on mgrast_release_3_0_2
crispr.pm (dead) No revisions exist on mgrast_release_3_0_2
find_tRNAs.pm (dead) No revisions exist on mgrast_release_3_0_2
genome_frequencies.pm (dead) No revisions exist on mgrast_release_3_0_2
gjoavllib.pm (dead) No revisions exist on mgrast_release_3_0_2
gjocluster.pm (dead) No revisions exist on mgrast_release_3_0_2
gjocontigmap.pm (dead) No revisions exist on mgrast_release_3_0_2
gjocontigs.pm (dead) No revisions exist on mgrast_release_3_0_2
high_expression_ref_ab.pm (dead) No revisions exist on mgrast_release_3_0_2
make_close_strain_family_tabs.pl (dead) No revisions exist on mgrast_release_3_0_2
make_subsys_based_families.pl (dead) No revisions exist on mgrast_release_3_0_2
match_to_axes.pm (dead) No revisions exist on mgrast_release_3_0_2
merge_families.pl (dead) No revisions exist on mgrast_release_3_0_2
overlap_resolution.pm (dead) No revisions exist on mgrast_release_3_0_2
pubmed.tt (dead) No revisions exist on mgrast_release_3_0_2

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