[Bio] / FigKernelPackages Repository:
ViewVC logotype

Index of /FigKernelPackages

Files shown:389 (Hide 253 dead files)
Sticky Tag:


File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  13 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.6  11 years  parrello  Changed to avoid an unnecessary creation of the FIG object at load time.
ComparedRegions.pm  1.6  13 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.16  11 years  parrello  Fixed a bad URL.
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.733  11 years  overbeek  add routine to get close pegs in the same subsystem
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.3  11 years  paczian  added support for FIGM
FIGMODEL.pm  1.2  11 years  chenry  Fixing bug in CpdLink function.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.48  11 years  paczian  moved encoded_annotation_to_natural_english to this module to be self contained
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.70  11 years  paczian  added support for FIGM
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.19  11 years  overbeek  fixes to detecting consistent fragments
FigFam.pm  1.75  12 years  arodri7  updated and corrected sub new
FigFams.pm  1.48  11 years  gdpusch  Added POD block listing the methods within this module.
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileIOFunctions.pm  1.1  11 years  chenry  These modules are for interacting with the modeling database Chris Henry and Mat...
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.3  11 years  olson  Fix database version of GenomeMeta's get_log output to match the old format, so ...
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  12 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  12 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.15  11 years  paczian  added functional coupling pin
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.111  11 years  parrello  Fixed subsystems_for_pegs. Changed to fail more gracefully if the attribute data...
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.7  11 years  parrello  Changed to round floating-point stats to integer values.
Subsystem.pm  1.140  11 years  dejongh  Changes to get_hope_reactions for a genome even if it isn't active in a subsyste...
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.7  11 years  parrello  Quoted values in string comparisons to avoid an error when working with sim obje...
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.114  11 years  olson  When tracing CGIs run at the command line, make the tracing code honor the TRACI...
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  12 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.10  11 years  overbeek  add the ability to find TIF3
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.17  11 years  golsen  Fixed a bug introduced into align_with_clustal() that caused it to return [ id, ...
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.3  11 years  overbeek  updates from Gary
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.22  11 years  dejongh  assume supersets are loaded
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ACH.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ACHserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ALITRE.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ALITREserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ANNO.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ANNOserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AT.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ATserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AdaboostClassifierAMRv1.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AdaboostClassify.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AliTreeIdConvert.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AliTreeSims.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AlignTree.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AlignsAndTrees.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AlignsAndTreesServer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AminoAcidMatrix.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AnnotateTransactions.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
AttributeTransactions.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
BBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
BerkTable.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Bin.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
BinningReports.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Biochemistry.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
BlankSVP.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
BlastInterface.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Boolean.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CGIAlignTreeViewer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CO.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
COserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CallBlast.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CallByProjection.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CallScanner.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Category.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ClientThing.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CloseGenomes.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CloseStrains.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ClusterPairs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Clustering.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Cmd2HTML.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CodonUsageTable.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CommonCGI.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ConservedDomainSearch.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Contigs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CorrTableEntry.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Correspondence.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CorrespondenceCache.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Corresponds.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CountTransactions.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
CrossSeedLinks.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Dlits.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
DrugResistanceDB.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ErrorMessage.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
EvalCom.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
EvalCon.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
EvalHelper.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ExpressionDir.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FBAMODEL.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FBAMODELserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FC.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FFB3.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FFserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FIGMODELObject.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FIGMODELTable.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FIGMODELdatabase.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FIGMODELmodel.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FIGMODELweb.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FIG_Config.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FIG_Config.py (dead) No revisions exist on mgrast_rel_2008_1110_v2
FQUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FastA.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FastQ.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FigSubsystem.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FigSubsystemMaster.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Find_RNAs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
FixTransactions.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GEO.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GPUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenBankToGTO.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenerateClusters.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeChecker.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeCodonUsages.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeMetaDatabase.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeSelector.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeSet.spec (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeSetClient.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeSetImpl.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeSetServer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
GenomeTypeObject.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Hsp.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
IC50.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
IDclient.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
IS_Data.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
IS_Subroutines.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
JulianDay.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KBASE.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KBIDUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KBInvoke.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KBRpcContext.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KBaseCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KmerClassifier.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KmerClient.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KmerDb.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KmerGutsNet.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KmerMgr.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KmerRepGenomes.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Kmers.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Kmers2013.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
KmersOld.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
LinksUI.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ListServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MD5Computer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MODELserv.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MODELserv_client.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MSSeedSupport.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MapToRef.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MgRastSims.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MinimalTracer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MissingRoles.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
MoveAliases.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
NCBI_sequence.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
NCBI_taxonomy.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
P3Contigs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
P3DataAPI.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
P3Sequences.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
P3Signatures.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
P3Utils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
P3WorkspaceClient.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
PG.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ParalogResolution.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ParseDate.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ParseSIBEnzyme.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
PartitionSeqs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
PersistentSets.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Phage.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
PickFeatureSet.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
PredictTaxonID.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Prodigal.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
PropagateGBMetadata.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ProtFamLite.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ProtFams.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ProtFamsLite.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ProtSims.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Prot_reps_drug_resistance.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RAST_submission.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RASTlib.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RASTserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RNA_reps_5S_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ReactionPath.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RepGenome.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RiboProtQC.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RoleParse.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RoleRule.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
RoleRuleSubstring.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SAP.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SAPserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SAPtutorial.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SEED.spec (dead) No revisions exist on mgrast_rel_2008_1110_v2
SEEDClient.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SEEDImpl.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SEEDServer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SRAlib.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SS.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SSU_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SSserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SUP.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SUPserver.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SampleDir.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SapCompareRegions.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SaplingCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SaplingGenomeData.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ScriptThing.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ScriptUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedAware.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedCodonUsageToKBase.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedEnv.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedHTML.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedSearch.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedSims.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedURLs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeedV.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SeqStore.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServComplex.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServFIGfam.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServFeature.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServGenome.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServIndex.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServOTU.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServReaction.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServRole.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServSubsysRow.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServerThing.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ServicesUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Signatures.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Sim2.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SimCompute.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SimFC.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SimsTable.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
StrepRepeats.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SubsystemPrimer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SubsystemPrimer2SS.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SubsystemProjector.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
SwissProtUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TBLstuff.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TabFile.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TableCell.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TaxUtils.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TetraMap.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TetraProfile.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TimeZone.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Tpn_Int_Reps.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TraceObject.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
TreeFC.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
Universal_Seqs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
UpdateServer.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
WriteEMBL.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
WriteGenbank.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
align_and_tree_test.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
bidir_best_hits.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
compare_coding.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
crispr.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
ffxtree.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
find_homologs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
find_tRNAs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gd_tree_0.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
genome_frequencies.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjoalignandtree.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjoavllib.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjocluster.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjocodonlib.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjocontigmap.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjocontigs.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjogenbank.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjogff.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjonativecodonlib.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjosegmentlib.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
gjostat.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
high_expression_ref_ab.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
make_close_strain_family_tabs.pl (dead) No revisions exist on mgrast_rel_2008_1110_v2
make_subsys_based_families.pl (dead) No revisions exist on mgrast_rel_2008_1110_v2
match_to_axes.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
merge_families.pl (dead) No revisions exist on mgrast_rel_2008_1110_v2
overlap_resolution.pm (dead) No revisions exist on mgrast_rel_2008_1110_v2
pubmed.tt (dead) No revisions exist on mgrast_rel_2008_1110_v2

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3