[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
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AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.35  11 years  wilke  new functions for ACH Resolution
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.5  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  11 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.723  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.1  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.41  11 years  disz  New wording in structured english
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.62  11 years  paczian  RAST genomes now always compute the pegs for subsystems on the fly (ignoring the...
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.18  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
FigFam.pm  1.75  11 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  11 years  arodri7  Figfams update
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  11 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  11 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  11 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.2  11 years  olson  touch the meta file when a change is written to the db.
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  11 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  11 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  12 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  11 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.107  11 years  parrello  Added auxiliary role support.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
Stats.pm  1.6  11 years  parrello  Added a method to facilitate periodic tracing.
Subsystem.pm  1.136  11 years  olson  Add support for $fig->change_funcrole()
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.6  11 years  parrello  Improved display of undefined and empty strings.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.108  11 years  parrello  Added a method to compare lists of strings.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  12 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  12 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  12 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.15  11 years  golsen  Fix FIG dependencies so that it is FIG-aware, but not FIG-dependent.
gjocolorlib.pm  1.1  12 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  11 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  13 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  11 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  11 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  12 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  11 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  11 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_0917
ACH.pm (dead) No revisions exist on mgrast_rel_2008_0917
ACHserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
ALITRE.pm (dead) No revisions exist on mgrast_rel_2008_0917
ALITREserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
ANNO.pm (dead) No revisions exist on mgrast_rel_2008_0917
ANNOserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
AT.pm (dead) No revisions exist on mgrast_rel_2008_0917
ATserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
AdaboostClassifierAMRv1.pm (dead) No revisions exist on mgrast_rel_2008_0917
AdaboostClassify.pm (dead) No revisions exist on mgrast_rel_2008_0917
AliTreeIdConvert.pm (dead) No revisions exist on mgrast_rel_2008_0917
AliTreeSims.pm (dead) No revisions exist on mgrast_rel_2008_0917
AlignTree.pm (dead) No revisions exist on mgrast_rel_2008_0917
AlignsAndTrees.pm (dead) No revisions exist on mgrast_rel_2008_0917
AlignsAndTreesServer.pm (dead) No revisions exist on mgrast_rel_2008_0917
AminoAcidMatrix.pm (dead) No revisions exist on mgrast_rel_2008_0917
AnnotateTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0917
AttributeTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0917
BBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_0917
BerkTable.pm (dead) No revisions exist on mgrast_rel_2008_0917
Bin.pm (dead) No revisions exist on mgrast_rel_2008_0917
BinningReports.pm (dead) No revisions exist on mgrast_rel_2008_0917
Biochemistry.pm (dead) No revisions exist on mgrast_rel_2008_0917
BlankSVP.pm (dead) No revisions exist on mgrast_rel_2008_0917
BlastInterface.pm (dead) No revisions exist on mgrast_rel_2008_0917
Boolean.pm (dead) No revisions exist on mgrast_rel_2008_0917
CGIAlignTreeViewer.pm (dead) No revisions exist on mgrast_rel_2008_0917
CO.pm (dead) No revisions exist on mgrast_rel_2008_0917
COserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
CallBlast.pm (dead) No revisions exist on mgrast_rel_2008_0917
CallByProjection.pm (dead) No revisions exist on mgrast_rel_2008_0917
CallScanner.pm (dead) No revisions exist on mgrast_rel_2008_0917
Category.pm (dead) No revisions exist on mgrast_rel_2008_0917
ClientThing.pm (dead) No revisions exist on mgrast_rel_2008_0917
CloseGenomes.pm (dead) No revisions exist on mgrast_rel_2008_0917
CloseStrains.pm (dead) No revisions exist on mgrast_rel_2008_0917
ClusterPairs.pm (dead) No revisions exist on mgrast_rel_2008_0917
Clustering.pm (dead) No revisions exist on mgrast_rel_2008_0917
Cmd2HTML.pm (dead) No revisions exist on mgrast_rel_2008_0917
CodonUsageTable.pm (dead) No revisions exist on mgrast_rel_2008_0917
CommonCGI.pm (dead) No revisions exist on mgrast_rel_2008_0917
ConservedDomainSearch.pm (dead) No revisions exist on mgrast_rel_2008_0917
Contigs.pm (dead) No revisions exist on mgrast_rel_2008_0917
CorrTableEntry.pm (dead) No revisions exist on mgrast_rel_2008_0917
Correspondence.pm (dead) No revisions exist on mgrast_rel_2008_0917
CorrespondenceCache.pm (dead) No revisions exist on mgrast_rel_2008_0917
Corresponds.pm (dead) No revisions exist on mgrast_rel_2008_0917
CountTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0917
CrossSeedLinks.pm (dead) No revisions exist on mgrast_rel_2008_0917
Dlits.pm (dead) No revisions exist on mgrast_rel_2008_0917
DrugResistanceDB.pm (dead) No revisions exist on mgrast_rel_2008_0917
ErrorMessage.pm (dead) No revisions exist on mgrast_rel_2008_0917
EvalCom.pm (dead) No revisions exist on mgrast_rel_2008_0917
EvalCon.pm (dead) No revisions exist on mgrast_rel_2008_0917
EvalHelper.pm (dead) No revisions exist on mgrast_rel_2008_0917
ExpressionDir.pm (dead) No revisions exist on mgrast_rel_2008_0917
FBAMODEL.pm (dead) No revisions exist on mgrast_rel_2008_0917
FBAMODELserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
FBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_0917
FC.pm (dead) No revisions exist on mgrast_rel_2008_0917
FFB3.pm (dead) No revisions exist on mgrast_rel_2008_0917
FFserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIGMODEL.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIGMODELObject.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIGMODELTable.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIGMODELdatabase.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIGMODELmodel.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIGMODELweb.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIG_Config.pm (dead) No revisions exist on mgrast_rel_2008_0917
FIG_Config.py (dead) No revisions exist on mgrast_rel_2008_0917
FQUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
FastA.pm (dead) No revisions exist on mgrast_rel_2008_0917
FastQ.pm (dead) No revisions exist on mgrast_rel_2008_0917
FigSubsystem.pm (dead) No revisions exist on mgrast_rel_2008_0917
FigSubsystemMaster.pm (dead) No revisions exist on mgrast_rel_2008_0917
FileIOFunctions.pm (dead) No revisions exist on mgrast_rel_2008_0917
Find_RNAs.pm (dead) No revisions exist on mgrast_rel_2008_0917
FixTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0917
GEO.pm (dead) No revisions exist on mgrast_rel_2008_0917
GPUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenBankToGTO.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenerateClusters.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeChecker.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeCodonUsages.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeMetaDatabase.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeSelector.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeSet.spec (dead) No revisions exist on mgrast_rel_2008_0917
GenomeSetClient.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeSetImpl.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeSetServer.pm (dead) No revisions exist on mgrast_rel_2008_0917
GenomeTypeObject.pm (dead) No revisions exist on mgrast_rel_2008_0917
Hsp.pm (dead) No revisions exist on mgrast_rel_2008_0917
IC50.pm (dead) No revisions exist on mgrast_rel_2008_0917
IDclient.pm (dead) No revisions exist on mgrast_rel_2008_0917
IS_Data.pm (dead) No revisions exist on mgrast_rel_2008_0917
IS_Subroutines.pm (dead) No revisions exist on mgrast_rel_2008_0917
JulianDay.pm (dead) No revisions exist on mgrast_rel_2008_0917
KBASE.pm (dead) No revisions exist on mgrast_rel_2008_0917
KBIDUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
KBInvoke.pm (dead) No revisions exist on mgrast_rel_2008_0917
KBRpcContext.pm (dead) No revisions exist on mgrast_rel_2008_0917
KBaseCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0917
KmerClassifier.pm (dead) No revisions exist on mgrast_rel_2008_0917
KmerClient.pm (dead) No revisions exist on mgrast_rel_2008_0917
KmerDb.pm (dead) No revisions exist on mgrast_rel_2008_0917
KmerGutsNet.pm (dead) No revisions exist on mgrast_rel_2008_0917
KmerMgr.pm (dead) No revisions exist on mgrast_rel_2008_0917
KmerRepGenomes.pm (dead) No revisions exist on mgrast_rel_2008_0917
Kmers.pm (dead) No revisions exist on mgrast_rel_2008_0917
Kmers2013.pm (dead) No revisions exist on mgrast_rel_2008_0917
KmersOld.pm (dead) No revisions exist on mgrast_rel_2008_0917
LinksUI.pm (dead) No revisions exist on mgrast_rel_2008_0917
ListServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_0917
MD5Computer.pm (dead) No revisions exist on mgrast_rel_2008_0917
MODELserv.pm (dead) No revisions exist on mgrast_rel_2008_0917
MODELserv_client.pm (dead) No revisions exist on mgrast_rel_2008_0917
MSSeedSupport.pm (dead) No revisions exist on mgrast_rel_2008_0917
MapToRef.pm (dead) No revisions exist on mgrast_rel_2008_0917
MgRastSims.pm (dead) No revisions exist on mgrast_rel_2008_0917
MinimalTracer.pm (dead) No revisions exist on mgrast_rel_2008_0917
MissingRoles.pm (dead) No revisions exist on mgrast_rel_2008_0917
MoveAliases.pm (dead) No revisions exist on mgrast_rel_2008_0917
NCBI_sequence.pm (dead) No revisions exist on mgrast_rel_2008_0917
NCBI_taxonomy.pm (dead) No revisions exist on mgrast_rel_2008_0917
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on mgrast_rel_2008_0917
OddStarts_ref.pm (dead) No revisions exist on mgrast_rel_2008_0917
P3Contigs.pm (dead) No revisions exist on mgrast_rel_2008_0917
P3DataAPI.pm (dead) No revisions exist on mgrast_rel_2008_0917
P3Sequences.pm (dead) No revisions exist on mgrast_rel_2008_0917
P3Signatures.pm (dead) No revisions exist on mgrast_rel_2008_0917
P3Utils.pm (dead) No revisions exist on mgrast_rel_2008_0917
P3WorkspaceClient.pm (dead) No revisions exist on mgrast_rel_2008_0917
PG.pm (dead) No revisions exist on mgrast_rel_2008_0917
ParalogResolution.pm (dead) No revisions exist on mgrast_rel_2008_0917
ParseDate.pm (dead) No revisions exist on mgrast_rel_2008_0917
ParseSIBEnzyme.pm (dead) No revisions exist on mgrast_rel_2008_0917
PartitionSeqs.pm (dead) No revisions exist on mgrast_rel_2008_0917
PersistentSets.pm (dead) No revisions exist on mgrast_rel_2008_0917
Phage.pm (dead) No revisions exist on mgrast_rel_2008_0917
PickFeatureSet.pm (dead) No revisions exist on mgrast_rel_2008_0917
PredictTaxonID.pm (dead) No revisions exist on mgrast_rel_2008_0917
Prodigal.pm (dead) No revisions exist on mgrast_rel_2008_0917
PropagateGBMetadata.pm (dead) No revisions exist on mgrast_rel_2008_0917
ProtFamLite.pm (dead) No revisions exist on mgrast_rel_2008_0917
ProtFams.pm (dead) No revisions exist on mgrast_rel_2008_0917
ProtFamsLite.pm (dead) No revisions exist on mgrast_rel_2008_0917
ProtSims.pm (dead) No revisions exist on mgrast_rel_2008_0917
Prot_reps_drug_resistance.pm (dead) No revisions exist on mgrast_rel_2008_0917
RAST_submission.pm (dead) No revisions exist on mgrast_rel_2008_0917
RASTlib.pm (dead) No revisions exist on mgrast_rel_2008_0917
RASTserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
RNA_reps_5S_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0917
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0917
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0917
ReactionPath.pm (dead) No revisions exist on mgrast_rel_2008_0917
RepGenome.pm (dead) No revisions exist on mgrast_rel_2008_0917
RiboProtQC.pm (dead) No revisions exist on mgrast_rel_2008_0917
RoleParse.pm (dead) No revisions exist on mgrast_rel_2008_0917
RoleRule.pm (dead) No revisions exist on mgrast_rel_2008_0917
RoleRuleSubstring.pm (dead) No revisions exist on mgrast_rel_2008_0917
SAP.pm (dead) No revisions exist on mgrast_rel_2008_0917
SAPserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
SAPtutorial.pm (dead) No revisions exist on mgrast_rel_2008_0917
SEED.spec (dead) No revisions exist on mgrast_rel_2008_0917
SEEDClient.pm (dead) No revisions exist on mgrast_rel_2008_0917
SEEDImpl.pm (dead) No revisions exist on mgrast_rel_2008_0917
SEEDServer.pm (dead) No revisions exist on mgrast_rel_2008_0917
SRAlib.pm (dead) No revisions exist on mgrast_rel_2008_0917
SS.pm (dead) No revisions exist on mgrast_rel_2008_0917
SSU_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_0917
SSserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
SUP.pm (dead) No revisions exist on mgrast_rel_2008_0917
SUPserver.pm (dead) No revisions exist on mgrast_rel_2008_0917
SampleDir.pm (dead) No revisions exist on mgrast_rel_2008_0917
SapCompareRegions.pm (dead) No revisions exist on mgrast_rel_2008_0917
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on mgrast_rel_2008_0917
SaplingCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0917
SaplingGenomeData.pm (dead) No revisions exist on mgrast_rel_2008_0917
ScriptThing.pm (dead) No revisions exist on mgrast_rel_2008_0917
ScriptUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedAware.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedCodonUsageToKBase.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedEnv.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedHTML.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedSearch.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedSims.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedURLs.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeedV.pm (dead) No revisions exist on mgrast_rel_2008_0917
SeqStore.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServComplex.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServFIGfam.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServFeature.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServGenome.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServIndex.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServOTU.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServReaction.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServRole.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServSubsysRow.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServerThing.pm (dead) No revisions exist on mgrast_rel_2008_0917
ServicesUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
Signatures.pm (dead) No revisions exist on mgrast_rel_2008_0917
Sim2.pm (dead) No revisions exist on mgrast_rel_2008_0917
SimCompute.pm (dead) No revisions exist on mgrast_rel_2008_0917
SimFC.pm (dead) No revisions exist on mgrast_rel_2008_0917
SimsTable.pm (dead) No revisions exist on mgrast_rel_2008_0917
StandaloneSims.pm (dead) No revisions exist on mgrast_rel_2008_0917
StrepRepeats.pm (dead) No revisions exist on mgrast_rel_2008_0917
SubsystemPrimer.pm (dead) No revisions exist on mgrast_rel_2008_0917
SubsystemPrimer2SS.pm (dead) No revisions exist on mgrast_rel_2008_0917
SubsystemProjector.pm (dead) No revisions exist on mgrast_rel_2008_0917
SwissProtUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
TBLstuff.pm (dead) No revisions exist on mgrast_rel_2008_0917
TabFile.pm (dead) No revisions exist on mgrast_rel_2008_0917
TableCell.pm (dead) No revisions exist on mgrast_rel_2008_0917
TaxUtils.pm (dead) No revisions exist on mgrast_rel_2008_0917
TetraMap.pm (dead) No revisions exist on mgrast_rel_2008_0917
TetraProfile.pm (dead) No revisions exist on mgrast_rel_2008_0917
TimeZone.pm (dead) No revisions exist on mgrast_rel_2008_0917
Tpn_Int_Reps.pm (dead) No revisions exist on mgrast_rel_2008_0917
TraceObject.pm (dead) No revisions exist on mgrast_rel_2008_0917
TreeFC.pm (dead) No revisions exist on mgrast_rel_2008_0917
Universal_Seqs.pm (dead) No revisions exist on mgrast_rel_2008_0917
UpdateServer.pm (dead) No revisions exist on mgrast_rel_2008_0917
WriteEMBL.pm (dead) No revisions exist on mgrast_rel_2008_0917
WriteGenbank.pm (dead) No revisions exist on mgrast_rel_2008_0917
align_and_tree_test.pm (dead) No revisions exist on mgrast_rel_2008_0917
bidir_best_hits.pm (dead) No revisions exist on mgrast_rel_2008_0917
compare_coding.pm (dead) No revisions exist on mgrast_rel_2008_0917
crispr.pm (dead) No revisions exist on mgrast_rel_2008_0917
ffxtree.pm (dead) No revisions exist on mgrast_rel_2008_0917
find_homologs.pm (dead) No revisions exist on mgrast_rel_2008_0917
find_tRNAs.pm (dead) No revisions exist on mgrast_rel_2008_0917
gd_tree_0.pm (dead) No revisions exist on mgrast_rel_2008_0917
genome_frequencies.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjoalignandtree.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjoavllib.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjocluster.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjocodonlib.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjocontigmap.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjocontigs.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjogenbank.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjogff.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjonativecodonlib.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjosegmentlib.pm (dead) No revisions exist on mgrast_rel_2008_0917
gjostat.pm (dead) No revisions exist on mgrast_rel_2008_0917
high_expression_ref_ab.pm (dead) No revisions exist on mgrast_rel_2008_0917
make_close_strain_family_tabs.pl (dead) No revisions exist on mgrast_rel_2008_0917
make_subsys_based_families.pl (dead) No revisions exist on mgrast_rel_2008_0917
match_to_axes.pm (dead) No revisions exist on mgrast_rel_2008_0917
merge_families.pl (dead) No revisions exist on mgrast_rel_2008_0917
overlap_resolution.pm (dead) No revisions exist on mgrast_rel_2008_0917
pubmed.tt (dead) No revisions exist on mgrast_rel_2008_0917

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