[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
Export/        
tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.34  12 years  wilke  readonly flag for reading contrib files/indices
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.16  13 years  overbeek  fix Assignments.pm
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  13 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.4  12 years  dsouza  Changed sort to make more efficient -- was taking very long.
ComparedRegions.pm  1.6  13 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
CountTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.16  12 years  parrello  Revamped to allow more general processing of log files.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.24  11 years  arodri7  added merge figfams functions
FIG.pm  1.715  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.1  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.36  11 years  parrello  Fixed for sprout compatability.
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.60  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.14  13 years  parrello  Fixed a missing equal sign in the generated HTML.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.17  12 years  overbeek  fixes to grouping
FigFam.pm  1.75  12 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  12 years  arodri7  Figfams update
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FigSubsystem.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
FigSubsystemMaster.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.1  12 years  olson  oops, these need updated.
HTML.pm  1.128  11 years  dsouza  Changed URL for SwissProt, TREMBL and UniProt links.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  12 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.1  12 years  bartels  *** empty log message ***
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  12 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.68  11 years  arodri7  allow users to select a non-fig id as an assign_from function
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  12 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.104  11 years  parrello  Added support for to_structured_english.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
Stats.pm  1.6  12 years  parrello  Added a method to facilitate periodic tracing.
Subsystem.pm  1.135  11 years  bartels  *** empty log message ***
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.6  11 years  parrello  Improved display of undefined and empty strings.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.107  12 years  parrello  Fixed Warn to leave $@ intact.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.6  12 years  jared  Corrected typo -jw
WikiTools.pm  1.5  12 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.15  11 years  golsen  Fix FIG dependencies so that it is FIG-aware, but not FIG-dependent.
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  14 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  12 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_0806
ACH.pm (dead) No revisions exist on mgrast_rel_2008_0806
ACHserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
ALITRE.pm (dead) No revisions exist on mgrast_rel_2008_0806
ALITREserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
ANNO.pm (dead) No revisions exist on mgrast_rel_2008_0806
ANNOserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
AT.pm (dead) No revisions exist on mgrast_rel_2008_0806
ATserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
AdaboostClassifierAMRv1.pm (dead) No revisions exist on mgrast_rel_2008_0806
AdaboostClassify.pm (dead) No revisions exist on mgrast_rel_2008_0806
AliTreeIdConvert.pm (dead) No revisions exist on mgrast_rel_2008_0806
AliTreeSims.pm (dead) No revisions exist on mgrast_rel_2008_0806
AlignTree.pm (dead) No revisions exist on mgrast_rel_2008_0806
AlignsAndTrees.pm (dead) No revisions exist on mgrast_rel_2008_0806
AlignsAndTreesServer.pm (dead) No revisions exist on mgrast_rel_2008_0806
AminoAcidMatrix.pm (dead) No revisions exist on mgrast_rel_2008_0806
AnnotateTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0806
AttributeTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0806
BBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_0806
BerkTable.pm (dead) No revisions exist on mgrast_rel_2008_0806
Bin.pm (dead) No revisions exist on mgrast_rel_2008_0806
BinningReports.pm (dead) No revisions exist on mgrast_rel_2008_0806
Biochemistry.pm (dead) No revisions exist on mgrast_rel_2008_0806
BlankSVP.pm (dead) No revisions exist on mgrast_rel_2008_0806
BlastInterface.pm (dead) No revisions exist on mgrast_rel_2008_0806
Boolean.pm (dead) No revisions exist on mgrast_rel_2008_0806
CGIAlignTreeViewer.pm (dead) No revisions exist on mgrast_rel_2008_0806
CO.pm (dead) No revisions exist on mgrast_rel_2008_0806
COserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
CallBlast.pm (dead) No revisions exist on mgrast_rel_2008_0806
CallByProjection.pm (dead) No revisions exist on mgrast_rel_2008_0806
CallScanner.pm (dead) No revisions exist on mgrast_rel_2008_0806
Category.pm (dead) No revisions exist on mgrast_rel_2008_0806
ClientThing.pm (dead) No revisions exist on mgrast_rel_2008_0806
CloseGenomes.pm (dead) No revisions exist on mgrast_rel_2008_0806
CloseStrains.pm (dead) No revisions exist on mgrast_rel_2008_0806
ClusterPairs.pm (dead) No revisions exist on mgrast_rel_2008_0806
Clustering.pm (dead) No revisions exist on mgrast_rel_2008_0806
Cmd2HTML.pm (dead) No revisions exist on mgrast_rel_2008_0806
CodonUsageTable.pm (dead) No revisions exist on mgrast_rel_2008_0806
CommonCGI.pm (dead) No revisions exist on mgrast_rel_2008_0806
ConservedDomainSearch.pm (dead) No revisions exist on mgrast_rel_2008_0806
Contigs.pm (dead) No revisions exist on mgrast_rel_2008_0806
CorrTableEntry.pm (dead) No revisions exist on mgrast_rel_2008_0806
Correspondence.pm (dead) No revisions exist on mgrast_rel_2008_0806
CorrespondenceCache.pm (dead) No revisions exist on mgrast_rel_2008_0806
Corresponds.pm (dead) No revisions exist on mgrast_rel_2008_0806
CrossSeedLinks.pm (dead) No revisions exist on mgrast_rel_2008_0806
Dlits.pm (dead) No revisions exist on mgrast_rel_2008_0806
DrugResistanceDB.pm (dead) No revisions exist on mgrast_rel_2008_0806
ErrorMessage.pm (dead) No revisions exist on mgrast_rel_2008_0806
EvalCom.pm (dead) No revisions exist on mgrast_rel_2008_0806
EvalCon.pm (dead) No revisions exist on mgrast_rel_2008_0806
EvalHelper.pm (dead) No revisions exist on mgrast_rel_2008_0806
ExpressionDir.pm (dead) No revisions exist on mgrast_rel_2008_0806
FBAMODEL.pm (dead) No revisions exist on mgrast_rel_2008_0806
FBAMODELserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
FBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_0806
FC.pm (dead) No revisions exist on mgrast_rel_2008_0806
FFB3.pm (dead) No revisions exist on mgrast_rel_2008_0806
FFserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIGMODEL.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIGMODELObject.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIGMODELTable.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIGMODELdatabase.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIGMODELmodel.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIGMODELweb.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIG_Config.pm (dead) No revisions exist on mgrast_rel_2008_0806
FIG_Config.py (dead) No revisions exist on mgrast_rel_2008_0806
FQUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
FastA.pm (dead) No revisions exist on mgrast_rel_2008_0806
FastQ.pm (dead) No revisions exist on mgrast_rel_2008_0806
FileIOFunctions.pm (dead) No revisions exist on mgrast_rel_2008_0806
Find_RNAs.pm (dead) No revisions exist on mgrast_rel_2008_0806
FixTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0806
GEO.pm (dead) No revisions exist on mgrast_rel_2008_0806
GPUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenBankToGTO.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenerateClusters.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeChecker.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeCodonUsages.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeMetaDatabase.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeSelector.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeSet.spec (dead) No revisions exist on mgrast_rel_2008_0806
GenomeSetClient.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeSetImpl.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeSetServer.pm (dead) No revisions exist on mgrast_rel_2008_0806
GenomeTypeObject.pm (dead) No revisions exist on mgrast_rel_2008_0806
Hsp.pm (dead) No revisions exist on mgrast_rel_2008_0806
IC50.pm (dead) No revisions exist on mgrast_rel_2008_0806
IDclient.pm (dead) No revisions exist on mgrast_rel_2008_0806
IS_Data.pm (dead) No revisions exist on mgrast_rel_2008_0806
IS_Subroutines.pm (dead) No revisions exist on mgrast_rel_2008_0806
JulianDay.pm (dead) No revisions exist on mgrast_rel_2008_0806
KBASE.pm (dead) No revisions exist on mgrast_rel_2008_0806
KBIDUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
KBInvoke.pm (dead) No revisions exist on mgrast_rel_2008_0806
KBRpcContext.pm (dead) No revisions exist on mgrast_rel_2008_0806
KBaseCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0806
KmerClassifier.pm (dead) No revisions exist on mgrast_rel_2008_0806
KmerClient.pm (dead) No revisions exist on mgrast_rel_2008_0806
KmerDb.pm (dead) No revisions exist on mgrast_rel_2008_0806
KmerGutsNet.pm (dead) No revisions exist on mgrast_rel_2008_0806
KmerMgr.pm (dead) No revisions exist on mgrast_rel_2008_0806
KmerRepGenomes.pm (dead) No revisions exist on mgrast_rel_2008_0806
Kmers.pm (dead) No revisions exist on mgrast_rel_2008_0806
Kmers2013.pm (dead) No revisions exist on mgrast_rel_2008_0806
KmersOld.pm (dead) No revisions exist on mgrast_rel_2008_0806
LinksUI.pm (dead) No revisions exist on mgrast_rel_2008_0806
ListServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_0806
MD5Computer.pm (dead) No revisions exist on mgrast_rel_2008_0806
MODELserv.pm (dead) No revisions exist on mgrast_rel_2008_0806
MODELserv_client.pm (dead) No revisions exist on mgrast_rel_2008_0806
MSSeedSupport.pm (dead) No revisions exist on mgrast_rel_2008_0806
MapToRef.pm (dead) No revisions exist on mgrast_rel_2008_0806
MgRastSims.pm (dead) No revisions exist on mgrast_rel_2008_0806
MinimalTracer.pm (dead) No revisions exist on mgrast_rel_2008_0806
MissingRoles.pm (dead) No revisions exist on mgrast_rel_2008_0806
MoveAliases.pm (dead) No revisions exist on mgrast_rel_2008_0806
NCBI_sequence.pm (dead) No revisions exist on mgrast_rel_2008_0806
NCBI_taxonomy.pm (dead) No revisions exist on mgrast_rel_2008_0806
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on mgrast_rel_2008_0806
OddStarts_ref.pm (dead) No revisions exist on mgrast_rel_2008_0806
P3Contigs.pm (dead) No revisions exist on mgrast_rel_2008_0806
P3DataAPI.pm (dead) No revisions exist on mgrast_rel_2008_0806
P3Sequences.pm (dead) No revisions exist on mgrast_rel_2008_0806
P3Signatures.pm (dead) No revisions exist on mgrast_rel_2008_0806
P3Utils.pm (dead) No revisions exist on mgrast_rel_2008_0806
P3WorkspaceClient.pm (dead) No revisions exist on mgrast_rel_2008_0806
PG.pm (dead) No revisions exist on mgrast_rel_2008_0806
ParalogResolution.pm (dead) No revisions exist on mgrast_rel_2008_0806
ParseDate.pm (dead) No revisions exist on mgrast_rel_2008_0806
ParseSIBEnzyme.pm (dead) No revisions exist on mgrast_rel_2008_0806
PartitionSeqs.pm (dead) No revisions exist on mgrast_rel_2008_0806
PersistentSets.pm (dead) No revisions exist on mgrast_rel_2008_0806
Phage.pm (dead) No revisions exist on mgrast_rel_2008_0806
PickFeatureSet.pm (dead) No revisions exist on mgrast_rel_2008_0806
PredictTaxonID.pm (dead) No revisions exist on mgrast_rel_2008_0806
Prodigal.pm (dead) No revisions exist on mgrast_rel_2008_0806
PropagateGBMetadata.pm (dead) No revisions exist on mgrast_rel_2008_0806
ProtFamLite.pm (dead) No revisions exist on mgrast_rel_2008_0806
ProtFams.pm (dead) No revisions exist on mgrast_rel_2008_0806
ProtFamsLite.pm (dead) No revisions exist on mgrast_rel_2008_0806
ProtSims.pm (dead) No revisions exist on mgrast_rel_2008_0806
Prot_reps_drug_resistance.pm (dead) No revisions exist on mgrast_rel_2008_0806
RAST_submission.pm (dead) No revisions exist on mgrast_rel_2008_0806
RASTlib.pm (dead) No revisions exist on mgrast_rel_2008_0806
RASTserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
RNA_reps_5S_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0806
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0806
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0806
ReactionPath.pm (dead) No revisions exist on mgrast_rel_2008_0806
RepGenome.pm (dead) No revisions exist on mgrast_rel_2008_0806
RiboProtQC.pm (dead) No revisions exist on mgrast_rel_2008_0806
RoleParse.pm (dead) No revisions exist on mgrast_rel_2008_0806
RoleRule.pm (dead) No revisions exist on mgrast_rel_2008_0806
RoleRuleSubstring.pm (dead) No revisions exist on mgrast_rel_2008_0806
SAP.pm (dead) No revisions exist on mgrast_rel_2008_0806
SAPserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
SAPtutorial.pm (dead) No revisions exist on mgrast_rel_2008_0806
SEED.spec (dead) No revisions exist on mgrast_rel_2008_0806
SEEDClient.pm (dead) No revisions exist on mgrast_rel_2008_0806
SEEDImpl.pm (dead) No revisions exist on mgrast_rel_2008_0806
SEEDServer.pm (dead) No revisions exist on mgrast_rel_2008_0806
SRAlib.pm (dead) No revisions exist on mgrast_rel_2008_0806
SS.pm (dead) No revisions exist on mgrast_rel_2008_0806
SSU_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_0806
SSserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
SUP.pm (dead) No revisions exist on mgrast_rel_2008_0806
SUPserver.pm (dead) No revisions exist on mgrast_rel_2008_0806
SampleDir.pm (dead) No revisions exist on mgrast_rel_2008_0806
SapCompareRegions.pm (dead) No revisions exist on mgrast_rel_2008_0806
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on mgrast_rel_2008_0806
SaplingCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0806
SaplingGenomeData.pm (dead) No revisions exist on mgrast_rel_2008_0806
ScriptThing.pm (dead) No revisions exist on mgrast_rel_2008_0806
ScriptUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedAware.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedCodonUsageToKBase.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedEnv.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedHTML.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedSearch.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedSims.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedURLs.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeedV.pm (dead) No revisions exist on mgrast_rel_2008_0806
SeqStore.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServComplex.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServFIGfam.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServFeature.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServGenome.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServIndex.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServOTU.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServReaction.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServRole.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServSubsysRow.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServerThing.pm (dead) No revisions exist on mgrast_rel_2008_0806
ServicesUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
Signatures.pm (dead) No revisions exist on mgrast_rel_2008_0806
Sim2.pm (dead) No revisions exist on mgrast_rel_2008_0806
SimCompute.pm (dead) No revisions exist on mgrast_rel_2008_0806
SimFC.pm (dead) No revisions exist on mgrast_rel_2008_0806
SimsTable.pm (dead) No revisions exist on mgrast_rel_2008_0806
StandaloneSims.pm (dead) No revisions exist on mgrast_rel_2008_0806
StrepRepeats.pm (dead) No revisions exist on mgrast_rel_2008_0806
SubsystemPrimer.pm (dead) No revisions exist on mgrast_rel_2008_0806
SubsystemPrimer2SS.pm (dead) No revisions exist on mgrast_rel_2008_0806
SubsystemProjector.pm (dead) No revisions exist on mgrast_rel_2008_0806
SwissProtUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
TBLstuff.pm (dead) No revisions exist on mgrast_rel_2008_0806
TabFile.pm (dead) No revisions exist on mgrast_rel_2008_0806
TableCell.pm (dead) No revisions exist on mgrast_rel_2008_0806
TaxUtils.pm (dead) No revisions exist on mgrast_rel_2008_0806
TetraMap.pm (dead) No revisions exist on mgrast_rel_2008_0806
TetraProfile.pm (dead) No revisions exist on mgrast_rel_2008_0806
TimeZone.pm (dead) No revisions exist on mgrast_rel_2008_0806
Tpn_Int_Reps.pm (dead) No revisions exist on mgrast_rel_2008_0806
TraceObject.pm (dead) No revisions exist on mgrast_rel_2008_0806
TreeFC.pm (dead) No revisions exist on mgrast_rel_2008_0806
Universal_Seqs.pm (dead) No revisions exist on mgrast_rel_2008_0806
UpdateServer.pm (dead) No revisions exist on mgrast_rel_2008_0806
WriteEMBL.pm (dead) No revisions exist on mgrast_rel_2008_0806
WriteGenbank.pm (dead) No revisions exist on mgrast_rel_2008_0806
align_and_tree_test.pm (dead) No revisions exist on mgrast_rel_2008_0806
bidir_best_hits.pm (dead) No revisions exist on mgrast_rel_2008_0806
compare_coding.pm (dead) No revisions exist on mgrast_rel_2008_0806
crispr.pm (dead) No revisions exist on mgrast_rel_2008_0806
ffxtree.pm (dead) No revisions exist on mgrast_rel_2008_0806
find_homologs.pm (dead) No revisions exist on mgrast_rel_2008_0806
find_tRNAs.pm (dead) No revisions exist on mgrast_rel_2008_0806
gd_tree_0.pm (dead) No revisions exist on mgrast_rel_2008_0806
genome_frequencies.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjoalignandtree.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjoavllib.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjocluster.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjocodonlib.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjocontigmap.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjocontigs.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjogenbank.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjogff.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjonativecodonlib.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjosegmentlib.pm (dead) No revisions exist on mgrast_rel_2008_0806
gjostat.pm (dead) No revisions exist on mgrast_rel_2008_0806
high_expression_ref_ab.pm (dead) No revisions exist on mgrast_rel_2008_0806
make_close_strain_family_tabs.pl (dead) No revisions exist on mgrast_rel_2008_0806
make_subsys_based_families.pl (dead) No revisions exist on mgrast_rel_2008_0806
match_to_axes.pm (dead) No revisions exist on mgrast_rel_2008_0806
merge_families.pl (dead) No revisions exist on mgrast_rel_2008_0806
overlap_resolution.pm (dead) No revisions exist on mgrast_rel_2008_0806
pubmed.tt (dead) No revisions exist on mgrast_rel_2008_0806

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