[Bio] / FigKernelPackages Repository:
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Index of /FigKernelPackages

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File Rev. Age Author Last log entry
 Parent Directory        
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tests/        
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
AnnoClearinghouse.pm  1.36  11 years  wilke  changed names for db tables
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.16  12 years  parrello  Added some new methods for the backfill gaps code in RAST.
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
COPYING.TXT  1.1  14 years  olson  add license file
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
CompareMR.pm  1.5  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  13 years  olson  clone the digest so that checksum() may be called multiple times
DBKernel.pm  1.52  12 years  gdpusch  Included the name of the failed load-file in the &reload_tables() load failure m...
DBrtns.pm  1.27  14 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.15  11 years  paczian  scaled images will now have better quality scaled images will now always have gr...
DocUtils.pm  1.17  11 years  parrello  Fixed a bug in the config file modification method and added tracing.
FF.pm  1.22  11 years  olson  Fix bug where return of should_be_member is lost.
FFs.pm  1.25  11 years  arodri7  corrected errors for merge_figfams
FIG.pm  1.724  11 years  overbeek  get rid of warning and update conditionally_assign
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.3  14 years  olson  Added license words.
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.1  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.41  11 years  disz  New wording in structured english
FIGStatisticalModels.pm  1.6  13 years  redwards  fixing log error
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.62  11 years  paczian  RAST genomes now always compute the pegs for subsystems on the fly (ignoring the...
FIG_CGI.pm  1.11  12 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  13 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.18  11 years  overbeek  fixes to FIGV.pm, CompareMR.pm and FIG.pm to support comparison of metabolic rec...
FigFam.pm  1.75  12 years  arodri7  updated and corrected sub new
FigFams.pm  1.46  12 years  arodri7  Figfams update
FigGFF.pm  1.22  13 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.2  12 years  olson  add shared locking
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.24  12 years  olson  Fix translation gunk.
GenoGraphics.pm  1.18  12 years  parrello  Not sure. The DIFF says there was no change.
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.15  12 years  olson  oops, these need updated.
GenomeMetaDB.pm  1.2  11 years  olson  touch the meta file when a change is written to the db.
HTML.pm  1.129  11 years  parrello  Fixed URL references.
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.8  12 years  parrello  Changed POD headers to work better with the new system.
KGML.pm  1.4  13 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
LogReader.pm  1.1  12 years  parrello  Added to facilitate reading the error log.
Makefile  1.10  12 years  golsen  Fix to path for pod2html
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
NCBI_genetic_code.pm  1.2  12 years  golsen  Some minor changes and add the FIG header.
NRTools.pm  1.3  12 years  olson  Add failed-open-directory check.
NewGenome.pm  1.75  12 years  gdpusch  Fixed bug in ORF::seq(); minor changes in debugging output. -- /gdp
Observation.pm  1.73  11 years  arodri7  fixed functional coupling data retrieval
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.14  13 years  overbeek  add utilities for computing alignments
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
PinnedRegions.pm  1.12  12 years  parrello  Fixed a compiler warning.
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SFXlate.pm  1.108  11 years  parrello  Fixed search to be able to find an organism by name.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
Scenario.pm  1.5  12 years  dejongh  Added getter/setter for path_info
SeedDas.pm  1.22  13 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
Sim.pm  1.13  12 years  overbeek  implemented new version of dsims based on partitions
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
Stats.pm  1.6  11 years  parrello  Added a method to facilitate periodic tracing.
Subsystem.pm  1.136  11 years  olson  Add support for $fig->change_funcrole()
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.6  11 years  parrello  Improved display of undefined and empty strings.
ToCall.pm  1.10  12 years  gdpusch  Clarified error msg for missing PEG FASTA file. -- /gdp
Tracer.pm  1.110  11 years  parrello  Clarified a comment.
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  12 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.7  11 years  paczian  added palette 'excel' with the default excel color palette minus black, white an...
WikiTools.pm  1.5  11 years  parrello  Fixed table generator to remove line-feeds that would break the table.
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.1  13 years  golsen  A rudimentary package to make a clustalw tree. The intent is to put the command...
collect_related_sequences.pm  1.5  13 years  overbeek  pack core alignments in make_trimmed_alignment_from_ids
display_related_genomes.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
fastDNAml.pm  1.2  14 years  olson  Added license words.
find_special_proteins.pm  1.9  12 years  gdpusch  Removed duplicate "my" declaration from &find_orf_start(). -- /gdp
gjoalign2html.pm  1.2  13 years  golsen  Major change in the alignment and tree portions of fid_checked. Nicer alignment ...
gjoalignment.pm  1.15  11 years  golsen  Fix FIG dependencies so that it is FIG-aware, but not FIG-dependent.
gjocolorlib.pm  1.1  13 years  overbeek  add Gary's compare genome stuff
gjolib.pm  1.2  14 years  olson  Added license words.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonewicklib.pm  1.11  12 years  golsen  Allow matched [ ... ] inside Newick tree comment. This violates the standard, b...
gjoparseblast.pm  1.2  14 years  golsen  Bug fix in parse error message (blast outputs invalid query and database sizes f...
gjophylip.pm  1.1  13 years  golsen  The start of a package to provide perl inferfaces into programs in Felsenstein's...
gjoseqlib.pm  1.13  12 years  golsen  Fixed major error in read_fasta() when there is not definition.
model.pm  1.18  12 years  dejongh  Fixes for excluding . and .. when reading directories for paths
proml.pm  1.8  13 years  golsen  A few updates to proml.pm, but this should be replaced by gjophylip.pm function ...
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.44  12 years  redwards  adding a randomizer function
representative_sequences.pm  1.9  13 years  overbeek  add make_trimmed_alignment_from_ids
selenoprotein_ref_seq.pm  1.4  12 years  golsen  Add to the list of reference proteins.
set_utilities.pm  1.2  14 years  olson  Added license words.
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.17  12 years  disz  added subsyste display on hover
5S_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_0625
ACH.pm (dead) No revisions exist on mgrast_rel_2008_0625
ACHserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
ALITRE.pm (dead) No revisions exist on mgrast_rel_2008_0625
ALITREserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
ANNO.pm (dead) No revisions exist on mgrast_rel_2008_0625
ANNOserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
AT.pm (dead) No revisions exist on mgrast_rel_2008_0625
ATserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
AdaboostClassifierAMRv1.pm (dead) No revisions exist on mgrast_rel_2008_0625
AdaboostClassify.pm (dead) No revisions exist on mgrast_rel_2008_0625
AliTreeIdConvert.pm (dead) No revisions exist on mgrast_rel_2008_0625
AliTreeSims.pm (dead) No revisions exist on mgrast_rel_2008_0625
AlignTree.pm (dead) No revisions exist on mgrast_rel_2008_0625
AlignsAndTrees.pm (dead) No revisions exist on mgrast_rel_2008_0625
AlignsAndTreesServer.pm (dead) No revisions exist on mgrast_rel_2008_0625
AminoAcidMatrix.pm (dead) No revisions exist on mgrast_rel_2008_0625
AnnotateTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0625
AttributeTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0625
BBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_0625
BerkTable.pm (dead) No revisions exist on mgrast_rel_2008_0625
Bin.pm (dead) No revisions exist on mgrast_rel_2008_0625
BinningReports.pm (dead) No revisions exist on mgrast_rel_2008_0625
Biochemistry.pm (dead) No revisions exist on mgrast_rel_2008_0625
BlankSVP.pm (dead) No revisions exist on mgrast_rel_2008_0625
BlastInterface.pm (dead) No revisions exist on mgrast_rel_2008_0625
Boolean.pm (dead) No revisions exist on mgrast_rel_2008_0625
CGIAlignTreeViewer.pm (dead) No revisions exist on mgrast_rel_2008_0625
CO.pm (dead) No revisions exist on mgrast_rel_2008_0625
COserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
CallBlast.pm (dead) No revisions exist on mgrast_rel_2008_0625
CallByProjection.pm (dead) No revisions exist on mgrast_rel_2008_0625
CallScanner.pm (dead) No revisions exist on mgrast_rel_2008_0625
Category.pm (dead) No revisions exist on mgrast_rel_2008_0625
ClientThing.pm (dead) No revisions exist on mgrast_rel_2008_0625
CloseGenomes.pm (dead) No revisions exist on mgrast_rel_2008_0625
CloseStrains.pm (dead) No revisions exist on mgrast_rel_2008_0625
ClusterPairs.pm (dead) No revisions exist on mgrast_rel_2008_0625
Clustering.pm (dead) No revisions exist on mgrast_rel_2008_0625
Cmd2HTML.pm (dead) No revisions exist on mgrast_rel_2008_0625
CodonUsageTable.pm (dead) No revisions exist on mgrast_rel_2008_0625
CommonCGI.pm (dead) No revisions exist on mgrast_rel_2008_0625
ConservedDomainSearch.pm (dead) No revisions exist on mgrast_rel_2008_0625
Contigs.pm (dead) No revisions exist on mgrast_rel_2008_0625
CorrTableEntry.pm (dead) No revisions exist on mgrast_rel_2008_0625
Correspondence.pm (dead) No revisions exist on mgrast_rel_2008_0625
CorrespondenceCache.pm (dead) No revisions exist on mgrast_rel_2008_0625
Corresponds.pm (dead) No revisions exist on mgrast_rel_2008_0625
CountTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0625
CrossSeedLinks.pm (dead) No revisions exist on mgrast_rel_2008_0625
Dlits.pm (dead) No revisions exist on mgrast_rel_2008_0625
DrugResistanceDB.pm (dead) No revisions exist on mgrast_rel_2008_0625
ErrorMessage.pm (dead) No revisions exist on mgrast_rel_2008_0625
EvalCom.pm (dead) No revisions exist on mgrast_rel_2008_0625
EvalCon.pm (dead) No revisions exist on mgrast_rel_2008_0625
EvalHelper.pm (dead) No revisions exist on mgrast_rel_2008_0625
ExpressionDir.pm (dead) No revisions exist on mgrast_rel_2008_0625
FBAMODEL.pm (dead) No revisions exist on mgrast_rel_2008_0625
FBAMODELserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
FBasicLocation.pm (dead) No revisions exist on mgrast_rel_2008_0625
FC.pm (dead) No revisions exist on mgrast_rel_2008_0625
FFB3.pm (dead) No revisions exist on mgrast_rel_2008_0625
FFserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIGMODEL.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIGMODELObject.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIGMODELTable.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIGMODELdatabase.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIGMODELmodel.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIGMODELweb.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIG_Config.pm (dead) No revisions exist on mgrast_rel_2008_0625
FIG_Config.py (dead) No revisions exist on mgrast_rel_2008_0625
FQUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
FastA.pm (dead) No revisions exist on mgrast_rel_2008_0625
FastQ.pm (dead) No revisions exist on mgrast_rel_2008_0625
FigSubsystem.pm (dead) No revisions exist on mgrast_rel_2008_0625
FigSubsystemMaster.pm (dead) No revisions exist on mgrast_rel_2008_0625
FileIOFunctions.pm (dead) No revisions exist on mgrast_rel_2008_0625
Find_RNAs.pm (dead) No revisions exist on mgrast_rel_2008_0625
FixTransactions.pm (dead) No revisions exist on mgrast_rel_2008_0625
GEO.pm (dead) No revisions exist on mgrast_rel_2008_0625
GPUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenBankToGTO.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenerateClusters.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeChecker.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeCodonUsages.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeMetaDatabase.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeSelector.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeSet.spec (dead) No revisions exist on mgrast_rel_2008_0625
GenomeSetClient.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeSetImpl.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeSetServer.pm (dead) No revisions exist on mgrast_rel_2008_0625
GenomeTypeObject.pm (dead) No revisions exist on mgrast_rel_2008_0625
Hsp.pm (dead) No revisions exist on mgrast_rel_2008_0625
IC50.pm (dead) No revisions exist on mgrast_rel_2008_0625
IDclient.pm (dead) No revisions exist on mgrast_rel_2008_0625
IS_Data.pm (dead) No revisions exist on mgrast_rel_2008_0625
IS_Subroutines.pm (dead) No revisions exist on mgrast_rel_2008_0625
JulianDay.pm (dead) No revisions exist on mgrast_rel_2008_0625
KBASE.pm (dead) No revisions exist on mgrast_rel_2008_0625
KBIDUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
KBInvoke.pm (dead) No revisions exist on mgrast_rel_2008_0625
KBRpcContext.pm (dead) No revisions exist on mgrast_rel_2008_0625
KBaseCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0625
KmerClassifier.pm (dead) No revisions exist on mgrast_rel_2008_0625
KmerClient.pm (dead) No revisions exist on mgrast_rel_2008_0625
KmerDb.pm (dead) No revisions exist on mgrast_rel_2008_0625
KmerGutsNet.pm (dead) No revisions exist on mgrast_rel_2008_0625
KmerMgr.pm (dead) No revisions exist on mgrast_rel_2008_0625
KmerRepGenomes.pm (dead) No revisions exist on mgrast_rel_2008_0625
Kmers.pm (dead) No revisions exist on mgrast_rel_2008_0625
Kmers2013.pm (dead) No revisions exist on mgrast_rel_2008_0625
KmersOld.pm (dead) No revisions exist on mgrast_rel_2008_0625
LinksUI.pm (dead) No revisions exist on mgrast_rel_2008_0625
ListServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_0625
MD5Computer.pm (dead) No revisions exist on mgrast_rel_2008_0625
MODELserv.pm (dead) No revisions exist on mgrast_rel_2008_0625
MODELserv_client.pm (dead) No revisions exist on mgrast_rel_2008_0625
MSSeedSupport.pm (dead) No revisions exist on mgrast_rel_2008_0625
MapToRef.pm (dead) No revisions exist on mgrast_rel_2008_0625
MgRastSims.pm (dead) No revisions exist on mgrast_rel_2008_0625
MinimalTracer.pm (dead) No revisions exist on mgrast_rel_2008_0625
MissingRoles.pm (dead) No revisions exist on mgrast_rel_2008_0625
MoveAliases.pm (dead) No revisions exist on mgrast_rel_2008_0625
NCBI_sequence.pm (dead) No revisions exist on mgrast_rel_2008_0625
NCBI_taxonomy.pm (dead) No revisions exist on mgrast_rel_2008_0625
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on mgrast_rel_2008_0625
OddStarts_ref.pm (dead) No revisions exist on mgrast_rel_2008_0625
P3Contigs.pm (dead) No revisions exist on mgrast_rel_2008_0625
P3DataAPI.pm (dead) No revisions exist on mgrast_rel_2008_0625
P3Sequences.pm (dead) No revisions exist on mgrast_rel_2008_0625
P3Signatures.pm (dead) No revisions exist on mgrast_rel_2008_0625
P3Utils.pm (dead) No revisions exist on mgrast_rel_2008_0625
P3WorkspaceClient.pm (dead) No revisions exist on mgrast_rel_2008_0625
PG.pm (dead) No revisions exist on mgrast_rel_2008_0625
ParalogResolution.pm (dead) No revisions exist on mgrast_rel_2008_0625
ParseDate.pm (dead) No revisions exist on mgrast_rel_2008_0625
ParseSIBEnzyme.pm (dead) No revisions exist on mgrast_rel_2008_0625
PartitionSeqs.pm (dead) No revisions exist on mgrast_rel_2008_0625
PersistentSets.pm (dead) No revisions exist on mgrast_rel_2008_0625
Phage.pm (dead) No revisions exist on mgrast_rel_2008_0625
PickFeatureSet.pm (dead) No revisions exist on mgrast_rel_2008_0625
PredictTaxonID.pm (dead) No revisions exist on mgrast_rel_2008_0625
Prodigal.pm (dead) No revisions exist on mgrast_rel_2008_0625
PropagateGBMetadata.pm (dead) No revisions exist on mgrast_rel_2008_0625
ProtFamLite.pm (dead) No revisions exist on mgrast_rel_2008_0625
ProtFams.pm (dead) No revisions exist on mgrast_rel_2008_0625
ProtFamsLite.pm (dead) No revisions exist on mgrast_rel_2008_0625
ProtSims.pm (dead) No revisions exist on mgrast_rel_2008_0625
Prot_reps_drug_resistance.pm (dead) No revisions exist on mgrast_rel_2008_0625
RAST_submission.pm (dead) No revisions exist on mgrast_rel_2008_0625
RASTlib.pm (dead) No revisions exist on mgrast_rel_2008_0625
RASTserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
RNA_reps_5S_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0625
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0625
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on mgrast_rel_2008_0625
ReactionPath.pm (dead) No revisions exist on mgrast_rel_2008_0625
RepGenome.pm (dead) No revisions exist on mgrast_rel_2008_0625
RiboProtQC.pm (dead) No revisions exist on mgrast_rel_2008_0625
RoleParse.pm (dead) No revisions exist on mgrast_rel_2008_0625
RoleRule.pm (dead) No revisions exist on mgrast_rel_2008_0625
RoleRuleSubstring.pm (dead) No revisions exist on mgrast_rel_2008_0625
SAP.pm (dead) No revisions exist on mgrast_rel_2008_0625
SAPserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
SAPtutorial.pm (dead) No revisions exist on mgrast_rel_2008_0625
SEED.spec (dead) No revisions exist on mgrast_rel_2008_0625
SEEDClient.pm (dead) No revisions exist on mgrast_rel_2008_0625
SEEDImpl.pm (dead) No revisions exist on mgrast_rel_2008_0625
SEEDServer.pm (dead) No revisions exist on mgrast_rel_2008_0625
SRAlib.pm (dead) No revisions exist on mgrast_rel_2008_0625
SS.pm (dead) No revisions exist on mgrast_rel_2008_0625
SSU_rRNA_reps.pm (dead) No revisions exist on mgrast_rel_2008_0625
SSserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
SUP.pm (dead) No revisions exist on mgrast_rel_2008_0625
SUPserver.pm (dead) No revisions exist on mgrast_rel_2008_0625
SampleDir.pm (dead) No revisions exist on mgrast_rel_2008_0625
SapCompareRegions.pm (dead) No revisions exist on mgrast_rel_2008_0625
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on mgrast_rel_2008_0625
SaplingCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0625
SaplingGenomeData.pm (dead) No revisions exist on mgrast_rel_2008_0625
ScriptThing.pm (dead) No revisions exist on mgrast_rel_2008_0625
ScriptUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedAware.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedCodonUsage.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedCodonUsageToKBase.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedEnv.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedHTML.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedSearch.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedSims.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedURLs.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeedV.pm (dead) No revisions exist on mgrast_rel_2008_0625
SeqStore.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServComplex.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServFIGfam.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServFeature.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServGenome.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServIndex.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServOTU.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServReaction.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServRole.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServSubsysRow.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServerScripts.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServerThing.pm (dead) No revisions exist on mgrast_rel_2008_0625
ServicesUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
Signatures.pm (dead) No revisions exist on mgrast_rel_2008_0625
Sim2.pm (dead) No revisions exist on mgrast_rel_2008_0625
SimCompute.pm (dead) No revisions exist on mgrast_rel_2008_0625
SimFC.pm (dead) No revisions exist on mgrast_rel_2008_0625
SimsTable.pm (dead) No revisions exist on mgrast_rel_2008_0625
StandaloneSims.pm (dead) No revisions exist on mgrast_rel_2008_0625
StrepRepeats.pm (dead) No revisions exist on mgrast_rel_2008_0625
SubsystemPrimer.pm (dead) No revisions exist on mgrast_rel_2008_0625
SubsystemPrimer2SS.pm (dead) No revisions exist on mgrast_rel_2008_0625
SubsystemProjector.pm (dead) No revisions exist on mgrast_rel_2008_0625
SwissProtUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
TBLstuff.pm (dead) No revisions exist on mgrast_rel_2008_0625
TabFile.pm (dead) No revisions exist on mgrast_rel_2008_0625
TableCell.pm (dead) No revisions exist on mgrast_rel_2008_0625
TaxUtils.pm (dead) No revisions exist on mgrast_rel_2008_0625
TetraMap.pm (dead) No revisions exist on mgrast_rel_2008_0625
TetraProfile.pm (dead) No revisions exist on mgrast_rel_2008_0625
TimeZone.pm (dead) No revisions exist on mgrast_rel_2008_0625
Tpn_Int_Reps.pm (dead) No revisions exist on mgrast_rel_2008_0625
TraceObject.pm (dead) No revisions exist on mgrast_rel_2008_0625
TreeFC.pm (dead) No revisions exist on mgrast_rel_2008_0625
Universal_Seqs.pm (dead) No revisions exist on mgrast_rel_2008_0625
UpdateServer.pm (dead) No revisions exist on mgrast_rel_2008_0625
WriteEMBL.pm (dead) No revisions exist on mgrast_rel_2008_0625
WriteGenbank.pm (dead) No revisions exist on mgrast_rel_2008_0625
align_and_tree_test.pm (dead) No revisions exist on mgrast_rel_2008_0625
bidir_best_hits.pm (dead) No revisions exist on mgrast_rel_2008_0625
compare_coding.pm (dead) No revisions exist on mgrast_rel_2008_0625
crispr.pm (dead) No revisions exist on mgrast_rel_2008_0625
ffxtree.pm (dead) No revisions exist on mgrast_rel_2008_0625
find_homologs.pm (dead) No revisions exist on mgrast_rel_2008_0625
find_tRNAs.pm (dead) No revisions exist on mgrast_rel_2008_0625
gd_tree_0.pm (dead) No revisions exist on mgrast_rel_2008_0625
genome_frequencies.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjoalignandtree.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjoavllib.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjocluster.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjocodonlib.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjocontigmap.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjocontigs.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjogenbank.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjogff.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjonativecodonlib.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjosegmentlib.pm (dead) No revisions exist on mgrast_rel_2008_0625
gjostat.pm (dead) No revisions exist on mgrast_rel_2008_0625
high_expression_ref_ab.pm (dead) No revisions exist on mgrast_rel_2008_0625
make_close_strain_family_tabs.pl (dead) No revisions exist on mgrast_rel_2008_0625
make_subsys_based_families.pl (dead) No revisions exist on mgrast_rel_2008_0625
match_to_axes.pm (dead) No revisions exist on mgrast_rel_2008_0625
merge_families.pl (dead) No revisions exist on mgrast_rel_2008_0625
overlap_resolution.pm (dead) No revisions exist on mgrast_rel_2008_0625
pubmed.tt (dead) No revisions exist on mgrast_rel_2008_0625

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