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File Rev. Age Author Last log entry
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ACH.pm  1.7  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
ACHserver.pm  1.16  10 years  parrello  Removed from the SAS distribution.
ALITRE.pm  1.3  8 years  parrello  Finished adding methods from AlignsAndTrees
ALITREserver.pm  1.1  8 years  parrello  New alignment/tree server stuff.
ANNO.pm  1.10  8 years  olson  Move guts of annotation server into ANNO.pm where they belong
ANNOserver.pm  1.22  8 years  olson  fix for change to use serverthing and its retry logic
AT.pm  1.6  8 years  fangfang  add blast function
ATserver.pm  1.2  9 years  fangfang  default url set to biobig
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTreeIdConvert.pm  1.1  8 years  golsen  Functions for interconverting MD5 and peg ids of alignments and trees in the SEE...
AliTreeSims.pm  1.6  8 years  fangfang  remove old code
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.11  9 years  parrello  Updates for single-genome loader.
AlignTree.pm  1.41  8 years  fangfang  fixed bug with aligning seq ends with clustal
AlignsAndTrees.pm  1.11  8 years  golsen  Some more documentation of internal functions.
AlignsAndTreesServer.pm  1.3  8 years  overbeek  debugged
AnnoClearinghouse.pm  1.44  10 years  wilke  Modified sql query to ? syntax
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.23  8 years  olson  Add a bunch of modules to the SAS release for myRAST. Make use of FIG_Config opt...
BerkTable.pm  1.2  9 years  olson  fix arg
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
CO.pm  1.6  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
COPYING.TXT  1.1  14 years  olson  add license file
COserver.pm  1.13  10 years  parrello  Removed from the SAS distribution.
ChromosomalClusters.pm  1.11  8 years  parrello  Added "roles_to_proteins" method.
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClientThing.pm  1.27  8 years  parrello  Fixed to handle modelseed stuff better in debug mode.
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
Clustering.pm  1.6  9 years  overbeek  added double and triple linkage
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  10 years  overbeek  new Contigs.pm and compare_coding.pm
CorrTableEntry.pm  1.5  8 years  overbeek  add 20th column - clear_bbhs
Correspondence.pm  1.4  9 years  overbeek  correct the identity check
CorrespondenceCache.pm  1.2  9 years  parrello  Added experiment filter to "fid_experiments". Fixed correspondence cache to work...
DBKernel.pm  1.68  8 years  olson  Add a bunch of modules to the SAS release for myRAST. Make use of FIG_Config opt...
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.19  8 years  redwards  fixing jpeg images
Dlits.pm  1.1  8 years  parrello  New protein-based Dlits.
DocUtils.pm  1.18  10 years  parrello  Added documentation functions to the Sapling server.
ErrorMessage.pm  1.2  9 years  olson  remove unused use CGI.
ExpressionDir.pm  1.11  8 years  overbeek  fixes for subsystem estimates
FC.pm  1.21  10 years  parrello  Fixed a bug in "co_occurrence_evidence".
FF.pm  1.35  9 years  disz  FigFam 6 digit fix
FFs.pm  1.49  9 years  olson  Clean up errors.
FFserver.pm  1.23  10 years  parrello  Removed from the SAS distribution.
FIG.pm  1.851  8 years  olson  Add index_genome.pl that will create the SEED data structures for a new SEED dir...
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  10 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.19  8 years  olson  Don't bail on creating a FIGM if one of hte FIGV creations fails.
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.56  8 years  olson  Add a bunch of modules to the SAS release for myRAST. Make use of FIG_Config opt...
FIGStatisticalModels.pm  1.7  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.99  8 years  olson  Ick, fix namespace trample.
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.4  8 years  golsen  Add a new version of the table function colorizing.
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.36  8 years  gdpusch  Fixed negative-coordinate bug in &clean_span().
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.4  9 years  olson  Changes for DesktopRast. CVHnS: ------------------------------------------------...
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.25  10 years  parrello  Added a method to compute the total location length.
GenoGraphics.pm  1.24  10 years  golsen  Back pedal on the attempt to diagnose jpeg and png availability in GenoGraphics
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.16  10 years  olson  Add lock retries; probably not needed now that I think I've fixed FileLocking bu...
GenomeMetaDB.pm  1.5  10 years  jared  added update_path
GenomeMetaDatabase.pm  1.1  10 years  jared  *** empty log message ***
HTML.pm  1.132  8 years  golsen  Significant changes in fid_link code. Mostly clean-up, but add user to link to ...
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.10  8 years  olson  Put. The Scheduler. Back.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
Kmers.pm  1.28  9 years  olson  fix off-by-one
KmersOld.pm  1.1  10 years  olson  version of Kmers.pm before the argument changes; made to go with figfam_server_2...
ListServerScripts.pm  1.2  8 years  parrello  Fixed to point to PUBSEED server for documentation.
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
MD5Computer.pm  1.3  8 years  parrello  Added support for protein FASTA files.
Makefile  1.13  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
MgRastSims.pm  1.1  10 years  redwards  a new package for getting sims for the mg-rast
MinimalTracer.pm  1.1  9 years  olson  More FS_RAST modes & supporting code for SAS use.
NCBI_genetic_code.pm  1.3  9 years  olson  add SAS header
NCBI_taxonomy.pm  1.4  9 years  golsen  Add more formats in which abbreviated lineages can be returned. Add long form of...
NRTools.pm  1.4  10 years  olson  update to new metadata standard
NewGenome.pm  1.80  10 years  parrello  Protected a "new FIG" in open code with an eval. THIS MUST BE FIXED.
Observation.pm  1.83  9 years  redwards  correcting web links
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.64  8 years  olson  Fix indexing upon subsystem installation
PHOB.pm  1.15  10 years  overbeek  switch from clustalw to muscle
PageBuilder.pm  1.15  8 years  olson  Add a bunch of modules to the SAS release for myRAST. Make use of FIG_Config opt...
ParalogResolution.pm  1.5  10 years  golsen  Modifications to support line-drawing character set in tree printer plots.
PartitionSeqs.pm  1.3  10 years  overbeek  return either scalar or list
Phage.pm  1.3  9 years  redwards  minor correction
PickFeatureSet.pm  1.2  10 years  overbeek  add .html to HTML files
PinnedRegions.pm  1.34  9 years  olson  fix unlink here too
ProtFamLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  10 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtSims.pm  1.19  9 years  overbeek  turn off debugging print
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RAST_submission.pm  1.28  9 years  olson  typofix
RASTserver.pm  1.23  9 years  gdpusch  Fixed bugs in and added more support for Viral and Euk jobs.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
ReactionPath.pm  1.1  8 years  parrello  Added new method to compute reaction paths.
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
RoleRule.pm  1.1  8 years  parrello  New modules for analyzing protein family functions.
RoleRuleSubstring.pm  1.1  8 years  parrello  New modules for analyzing protein family functions.
SAP.pm  1.166  8 years  parrello  Added new get_subsystems method.
SAPserver.pm  1.14  9 years  parrello  Support for local SQLite servers.
SAPtutorial.pm  1.10  10 years  parrello  Fixed some errors in examples of ID types.
SFXlate.pm  1.119  10 years  parrello  Added "families_containing_peg".
SS.pm  1.13  10 years  parrello  More documentation cleanup.
SSU_rRNA_reps.pm  1.3  9 years  golsen  Adjust end of one reference sequence by padding it slightly.
SSserver.pm  1.17  10 years  parrello  Removed from the SAS distribution.
SUP.pm  1.2  9 years  parrello  New methods for alignment data.
SUPserver.pm  1.1  9 years  parrello  New Sapling update support.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
SampleDir.pm  1.4  9 years  olson  More analysis fixes; user-agent setting.
SapCompareRegions.pm  1.5  8 years  olson  Actually commit the bugfix I made.
Scenario.pm  1.10  9 years  dejongh  change scenario handling to use path_info.txt
ScriptThing.pm  1.8  9 years  parrello  Expression vector support methods.
SeedAware.pm  1.7  8 years  olson  add win32 support to executable_For
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedEnv.pm  1.4  8 years  olson  Use new path to FBAModelSerer
SeedHTML.pm  1.3  10 years  olson  More distro fixes.
SeedSearch.pm  1.3  8 years  olson  OK, index rebuilt, we can switch to the new encoding now.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
SeedUtils.pm  1.62  8 years  olson  Don't try to require DB_File until actually invoking the berk table routines.
SeedV.pm  1.10  8 years  olson  fix nasty boundary bug
ServerScripts.pm  1.5  9 years  overbeek  add summarize_MG_output
ServerThing.pm  1.82  8 years  parrello  Bug fix in the raw_methods code.
Signatures.pm  1.2  9 years  parrello  Various POD fixes.
Sim.pm  1.15  8 years  golsen  Fix the calculation of the normalized bit score.
Sim2.pm  1.1  8 years  overbeek  tree sims
SimFC.pm  1.3  10 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.9  8 years  olson  Add a bunch of modules to the SAS release for myRAST. Make use of FIG_Config opt...
Subsystem.pm  1.154  8 years  olson  forgot the delete on subsystem_nonaux_role
TBLstuff.pm  1.2  10 years  overbeek  minor fixes
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.12  8 years  olson  Add a bunch of modules to the SAS release for myRAST. Make use of FIG_Config opt...
ToCall.pm  1.11  10 years  gdpusch  Major rewrite to prevent already-found PEGs from being re-called by every stage ...
Tracer.pm  1.133  8 years  olson  Add a bunch of modules to the SAS release for myRAST. Make use of FIG_Config opt...
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.16  9 years  paczian  re-added circle color scheme
WikiTools.pm  1.8  10 years  parrello  Fixed a glitch in list rendering.
WriteEMBL.pm  1.1  8 years  gdpusch  Initial checkin --- probably still needs work.
WriteGenbank.pm  1.2  9 years  gdpusch  Forgot trailing "1;" :(
__init__.py  1.2  14 years  olson  Added license words.
align_and_tree_test.pm  1.1  8 years  golsen  Temp code for using DBMS version of alignment and tree access.
clustaltree.pm  1.3  10 years  golsen  New super duper ala Peter T. Hooper paralog resolution interface.
collect_related_sequences.pm  1.6  9 years  golsen  Update to use SeedAware.pm (and do some general clean-up).
compare_coding.pm  1.10  9 years  golsen  Integrate use of SeedAware.pm
display_related_genomes.pm  1.2  9 years  golsen  Minor documentation changes in code.
fastDNAml.pm  1.2  14 years  olson  Added license words.
ffxtree.pm  1.25  8 years  fangfang  modify link option for tree_to_html
find_homologs.pm  1.4  9 years  golsen  use SeedAware Many changes in details of code.
find_special_proteins.pm  1.12  9 years  olson  typod the declaration
gd_tree_0.pm  1.5  9 years  golsen  Extensive reworking of color management.
gjoalign2html.pm  1.5  9 years  fangfang  SAS component
gjoalignandtree.pm  1.16  9 years  golsen  Minor consistency improvements in options, and remove redundancy in getting the ...
gjoalignment.pm  1.40  8 years  fangfang  add option --anysymbol for align_with_mafft
gjocodonlib.pm  1.3  8 years  golsen  Many changes and updates in organization of the file. A few new useful function...
gjocolorlib.pm  1.7  9 years  golsen  Added support for luma (HSY color definitions). Changed all code so that html co...
gjogenbank.pm  1.9  8 years  golsen  Some sites do not include a blank space after "ORIGIN".
gjogff.pm  1.2  9 years  golsen  Changes to fix some bugs in GenBank format reading and writing. Changes to deal ...
gjolib.pm  1.3  10 years  olson  Add more modules to the SAS toolkit.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonativecodonlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjonewicklib.pm  1.29  8 years  golsen  Add support for a scale bar in printer plot trees. Add -s (scale bar) and -S (sc...
gjoparseblast.pm  1.8  9 years  golsen  Fix two minor typographical errors in the documentation.
gjophylip.pm  1.9  9 years  golsen  Fix a cosmetic issue in the cleaning of sequences for PHYLIP.
gjosegmentlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjoseqlib.pm  1.25  9 years  golsen  Just some additions to the function descriptions.
gjostat.pm  1.3  9 years  golsen  Convert die to confess.
model.pm  1.36  9 years  dejongh  change scenario handling to use path_info.txt
proml.pm  1.9  10 years  golsen  Minor updates to SEED awareness.
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.46  8 years  redwards  adding unzip
representative_sequences.pm  1.18  9 years  golsen  Huge restructuring of the rep_seq() and rep_seq2() functions. Better performanc...
selenoprotein_ref_seq.pm  1.5  10 years  golsen  Add some reference sequences and replace ; with @ in functions.
set_utilities.pm  1.3  10 years  overbeek  make SAS components
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.20  10 years  olson  Add more modules to the SAS toolkit.
5S_rRNA_reps.pm (dead) No revisions exist on mgrast_dev_08112011
AdaboostClassifierAMRv1.pm (dead) No revisions exist on mgrast_dev_08112011
AdaboostClassify.pm (dead) No revisions exist on mgrast_dev_08112011
AminoAcidMatrix.pm (dead) No revisions exist on mgrast_dev_08112011
AnnotateTransactions.pm (dead) No revisions exist on mgrast_dev_08112011
AttributeTransactions.pm (dead) No revisions exist on mgrast_dev_08112011
BBasicLocation.pm (dead) No revisions exist on mgrast_dev_08112011
Bin.pm (dead) No revisions exist on mgrast_dev_08112011
BinningReports.pm (dead) No revisions exist on mgrast_dev_08112011
Biochemistry.pm (dead) No revisions exist on mgrast_dev_08112011
BlankSVP.pm (dead) No revisions exist on mgrast_dev_08112011
BlastInterface.pm (dead) No revisions exist on mgrast_dev_08112011
Boolean.pm (dead) No revisions exist on mgrast_dev_08112011
CGIAlignTreeViewer.pm (dead) No revisions exist on mgrast_dev_08112011
CallBlast.pm (dead) No revisions exist on mgrast_dev_08112011
CallByProjection.pm (dead) No revisions exist on mgrast_dev_08112011
CallScanner.pm (dead) No revisions exist on mgrast_dev_08112011
Category.pm (dead) No revisions exist on mgrast_dev_08112011
CloseGenomes.pm (dead) No revisions exist on mgrast_dev_08112011
CloseStrains.pm (dead) No revisions exist on mgrast_dev_08112011
ClusterPairs.pm (dead) No revisions exist on mgrast_dev_08112011
Cmd2HTML.pm (dead) No revisions exist on mgrast_dev_08112011
CodonUsageTable.pm (dead) No revisions exist on mgrast_dev_08112011
CommonCGI.pm (dead) No revisions exist on mgrast_dev_08112011
ConservedDomainSearch.pm (dead) No revisions exist on mgrast_dev_08112011
Corresponds.pm (dead) No revisions exist on mgrast_dev_08112011
CountTransactions.pm (dead) No revisions exist on mgrast_dev_08112011
CrossSeedLinks.pm (dead) No revisions exist on mgrast_dev_08112011
DrugResistanceDB.pm (dead) No revisions exist on mgrast_dev_08112011
EvalCom.pm (dead) No revisions exist on mgrast_dev_08112011
EvalCon.pm (dead) No revisions exist on mgrast_dev_08112011
EvalHelper.pm (dead) No revisions exist on mgrast_dev_08112011
FBAMODEL.pm (dead) No revisions exist on mgrast_dev_08112011
FBAMODELserver.pm (dead) No revisions exist on mgrast_dev_08112011
FBasicLocation.pm (dead) No revisions exist on mgrast_dev_08112011
FFB3.pm (dead) No revisions exist on mgrast_dev_08112011
FIGMODEL.pm (dead) No revisions exist on mgrast_dev_08112011
FIGMODELObject.pm (dead) No revisions exist on mgrast_dev_08112011
FIGMODELTable.pm (dead) No revisions exist on mgrast_dev_08112011
FIGMODELdatabase.pm (dead) No revisions exist on mgrast_dev_08112011
FIGMODELmodel.pm (dead) No revisions exist on mgrast_dev_08112011
FIGMODELweb.pm (dead) No revisions exist on mgrast_dev_08112011
FIG_Config.pm (dead) No revisions exist on mgrast_dev_08112011
FIG_Config.py (dead) No revisions exist on mgrast_dev_08112011
FQUtils.pm (dead) No revisions exist on mgrast_dev_08112011
FastA.pm (dead) No revisions exist on mgrast_dev_08112011
FastQ.pm (dead) No revisions exist on mgrast_dev_08112011
FigFam.pm (dead) No revisions exist on mgrast_dev_08112011
FigFams.pm (dead) No revisions exist on mgrast_dev_08112011
FigSubsystem.pm (dead) No revisions exist on mgrast_dev_08112011
FigSubsystemMaster.pm (dead) No revisions exist on mgrast_dev_08112011
FileIOFunctions.pm (dead) No revisions exist on mgrast_dev_08112011
Find_RNAs.pm (dead) No revisions exist on mgrast_dev_08112011
FixTransactions.pm (dead) No revisions exist on mgrast_dev_08112011
GEO.pm (dead) No revisions exist on mgrast_dev_08112011
GPUtils.pm (dead) No revisions exist on mgrast_dev_08112011
GenBankToGTO.pm (dead) No revisions exist on mgrast_dev_08112011
GenerateClusters.pm (dead) No revisions exist on mgrast_dev_08112011
GenomeChecker.pm (dead) No revisions exist on mgrast_dev_08112011
GenomeCodonUsages.pm (dead) No revisions exist on mgrast_dev_08112011
GenomeSelector.pm (dead) No revisions exist on mgrast_dev_08112011
GenomeSet.spec (dead) No revisions exist on mgrast_dev_08112011
GenomeSetClient.pm (dead) No revisions exist on mgrast_dev_08112011
GenomeSetImpl.pm (dead) No revisions exist on mgrast_dev_08112011
GenomeSetServer.pm (dead) No revisions exist on mgrast_dev_08112011
GenomeTypeObject.pm (dead) No revisions exist on mgrast_dev_08112011
Hsp.pm (dead) No revisions exist on mgrast_dev_08112011
IC50.pm (dead) No revisions exist on mgrast_dev_08112011
IDclient.pm (dead) No revisions exist on mgrast_dev_08112011
IS_Data.pm (dead) No revisions exist on mgrast_dev_08112011
IS_Subroutines.pm (dead) No revisions exist on mgrast_dev_08112011
JulianDay.pm (dead) No revisions exist on mgrast_dev_08112011
KBASE.pm (dead) No revisions exist on mgrast_dev_08112011
KBIDUtils.pm (dead) No revisions exist on mgrast_dev_08112011
KBInvoke.pm (dead) No revisions exist on mgrast_dev_08112011
KBRpcContext.pm (dead) No revisions exist on mgrast_dev_08112011
KBaseCodonUsage.pm (dead) No revisions exist on mgrast_dev_08112011
KmerClassifier.pm (dead) No revisions exist on mgrast_dev_08112011
KmerClient.pm (dead) No revisions exist on mgrast_dev_08112011
KmerDb.pm (dead) No revisions exist on mgrast_dev_08112011
KmerGutsNet.pm (dead) No revisions exist on mgrast_dev_08112011
KmerMgr.pm (dead) No revisions exist on mgrast_dev_08112011
KmerRepGenomes.pm (dead) No revisions exist on mgrast_dev_08112011
Kmers2013.pm (dead) No revisions exist on mgrast_dev_08112011
LinksUI.pm (dead) No revisions exist on mgrast_dev_08112011
MODELserv.pm (dead) No revisions exist on mgrast_dev_08112011
MODELserv_client.pm (dead) No revisions exist on mgrast_dev_08112011
MSSeedSupport.pm (dead) No revisions exist on mgrast_dev_08112011
MapToRef.pm (dead) No revisions exist on mgrast_dev_08112011
MissingRoles.pm (dead) No revisions exist on mgrast_dev_08112011
MoveAliases.pm (dead) No revisions exist on mgrast_dev_08112011
NCBI_sequence.pm (dead) No revisions exist on mgrast_dev_08112011
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on mgrast_dev_08112011
P3Contigs.pm (dead) No revisions exist on mgrast_dev_08112011
P3DataAPI.pm (dead) No revisions exist on mgrast_dev_08112011
P3Sequences.pm (dead) No revisions exist on mgrast_dev_08112011
P3Signatures.pm (dead) No revisions exist on mgrast_dev_08112011
P3Utils.pm (dead) No revisions exist on mgrast_dev_08112011
P3WorkspaceClient.pm (dead) No revisions exist on mgrast_dev_08112011
PG.pm (dead) No revisions exist on mgrast_dev_08112011
ParseDate.pm (dead) No revisions exist on mgrast_dev_08112011
ParseSIBEnzyme.pm (dead) No revisions exist on mgrast_dev_08112011
PersistentSets.pm (dead) No revisions exist on mgrast_dev_08112011
PredictTaxonID.pm (dead) No revisions exist on mgrast_dev_08112011
Prodigal.pm (dead) No revisions exist on mgrast_dev_08112011
PropagateGBMetadata.pm (dead) No revisions exist on mgrast_dev_08112011
Prot_reps_drug_resistance.pm (dead) No revisions exist on mgrast_dev_08112011
RASTlib.pm (dead) No revisions exist on mgrast_dev_08112011
RNA_reps_5S_rRNA.pm (dead) No revisions exist on mgrast_dev_08112011
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on mgrast_dev_08112011
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on mgrast_dev_08112011
RepGenome.pm (dead) No revisions exist on mgrast_dev_08112011
RiboProtQC.pm (dead) No revisions exist on mgrast_dev_08112011
RoleParse.pm (dead) No revisions exist on mgrast_dev_08112011
SEED.spec (dead) No revisions exist on mgrast_dev_08112011
SEEDClient.pm (dead) No revisions exist on mgrast_dev_08112011
SEEDImpl.pm (dead) No revisions exist on mgrast_dev_08112011
SEEDServer.pm (dead) No revisions exist on mgrast_dev_08112011
SRAlib.pm (dead) No revisions exist on mgrast_dev_08112011
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on mgrast_dev_08112011
SaplingCodonUsage.pm (dead) No revisions exist on mgrast_dev_08112011
SaplingGenomeData.pm (dead) No revisions exist on mgrast_dev_08112011
ScriptUtils.pm (dead) No revisions exist on mgrast_dev_08112011
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on mgrast_dev_08112011
SeedCodonUsage.pm (dead) No revisions exist on mgrast_dev_08112011
SeedCodonUsageToKBase.pm (dead) No revisions exist on mgrast_dev_08112011
SeedURLs.pm (dead) No revisions exist on mgrast_dev_08112011
SeqStore.pm (dead) No revisions exist on mgrast_dev_08112011
ServComplex.pm (dead) No revisions exist on mgrast_dev_08112011
ServFIGfam.pm (dead) No revisions exist on mgrast_dev_08112011
ServFeature.pm (dead) No revisions exist on mgrast_dev_08112011
ServGenome.pm (dead) No revisions exist on mgrast_dev_08112011
ServIndex.pm (dead) No revisions exist on mgrast_dev_08112011
ServOTU.pm (dead) No revisions exist on mgrast_dev_08112011
ServReaction.pm (dead) No revisions exist on mgrast_dev_08112011
ServRole.pm (dead) No revisions exist on mgrast_dev_08112011
ServSubsysRow.pm (dead) No revisions exist on mgrast_dev_08112011
ServicesUtils.pm (dead) No revisions exist on mgrast_dev_08112011
SimCompute.pm (dead) No revisions exist on mgrast_dev_08112011
SimsTable.pm (dead) No revisions exist on mgrast_dev_08112011
StrepRepeats.pm (dead) No revisions exist on mgrast_dev_08112011
SubsystemPrimer.pm (dead) No revisions exist on mgrast_dev_08112011
SubsystemPrimer2SS.pm (dead) No revisions exist on mgrast_dev_08112011
SubsystemProjector.pm (dead) No revisions exist on mgrast_dev_08112011
SwissProtUtils.pm (dead) No revisions exist on mgrast_dev_08112011
TabFile.pm (dead) No revisions exist on mgrast_dev_08112011
TableCell.pm (dead) No revisions exist on mgrast_dev_08112011
TaxUtils.pm (dead) No revisions exist on mgrast_dev_08112011
TetraMap.pm (dead) No revisions exist on mgrast_dev_08112011
TetraProfile.pm (dead) No revisions exist on mgrast_dev_08112011
TimeZone.pm (dead) No revisions exist on mgrast_dev_08112011
Tpn_Int_Reps.pm (dead) No revisions exist on mgrast_dev_08112011
TraceObject.pm (dead) No revisions exist on mgrast_dev_08112011
TreeFC.pm (dead) No revisions exist on mgrast_dev_08112011
Universal_Seqs.pm (dead) No revisions exist on mgrast_dev_08112011
UpdateServer.pm (dead) No revisions exist on mgrast_dev_08112011
bidir_best_hits.pm (dead) No revisions exist on mgrast_dev_08112011
crispr.pm (dead) No revisions exist on mgrast_dev_08112011
find_tRNAs.pm (dead) No revisions exist on mgrast_dev_08112011
genome_frequencies.pm (dead) No revisions exist on mgrast_dev_08112011
gjoavllib.pm (dead) No revisions exist on mgrast_dev_08112011
gjocluster.pm (dead) No revisions exist on mgrast_dev_08112011
gjocontigmap.pm (dead) No revisions exist on mgrast_dev_08112011
gjocontigs.pm (dead) No revisions exist on mgrast_dev_08112011
high_expression_ref_ab.pm (dead) No revisions exist on mgrast_dev_08112011
make_close_strain_family_tabs.pl (dead) No revisions exist on mgrast_dev_08112011
make_subsys_based_families.pl (dead) No revisions exist on mgrast_dev_08112011
match_to_axes.pm (dead) No revisions exist on mgrast_dev_08112011
merge_families.pl (dead) No revisions exist on mgrast_dev_08112011
overlap_resolution.pm (dead) No revisions exist on mgrast_dev_08112011
pubmed.tt (dead) No revisions exist on mgrast_dev_08112011

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