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File Rev. Age Author Last log entry
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ACH.pm  1.7  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
ACHserver.pm  1.16  10 years  parrello  Removed from the SAS distribution.
ALITRE.pm  1.1  8 years  parrello  New alignment/tree server stuff.
ALITREserver.pm  1.1  8 years  parrello  New alignment/tree server stuff.
ANNO.pm  1.9  8 years  parrello  Fixed missing method problem.
ANNOserver.pm  1.20  9 years  parrello  Fixed a POD error.
AT.pm  1.6  8 years  fangfang  add blast function
ATserver.pm  1.2  9 years  fangfang  default url set to biobig
AliTree.pm  1.5  12 years  overbeek  FIGfams are now broadened to include PEGs with mismatching functions
AliTreeIdConvert.pm  1.1  8 years  golsen  Functions for interconverting MD5 and peg ids of alignments and trees in the SEE...
AliTreeSims.pm  1.6  8 years  fangfang  remove old code
AliTrees.pm  1.4  12 years  overbeek  fix AliTrees.pm to fail gracefully
AliasAnalysis.pm  1.11  9 years  parrello  Updates for single-genome loader.
AlignTree.pm  1.37  8 years  fangfang  update
AlignsAndTrees.pm  1.4  8 years  overbeek  debugged
AlignsAndTreesServer.pm  1.3  8 years  overbeek  debugged
AnnoClearinghouse.pm  1.44  10 years  wilke  Modified sql query to ? syntax
Annotation.pm  1.4  12 years  parrello  Added a TITLE statement for the Wiki.
ApplyTransactions.pm  1.7  12 years  parrello  Changed POD format for better compatability with Wiki.
Assignments.pm  1.17  11 years  overbeek  remove impact of our annotations on making assignments using auto_assign
BadCall.pm  1.4  12 years  parrello  Replaced obsolete AddToListMap method.
BasicLocation.pm  1.19  10 years  parrello  Updated to Sapling Server for Berkeley.
BerkTable.pm  1.2  9 years  olson  fix arg
BinarySearch.pm  1.1  12 years  overbeek  just add a binary search so I do not have to recode it again
Blast.pm  1.5  12 years  overbeek  close TMP files in Blast.pm
ButtonArray.pm  1.1  12 years  golsen  Two subroutines to support a user ordering of items. Created for the compare ge...
CO.pm  1.6  10 years  disz  changed doc to say XXserver->new() insetad of XX->new
COPYING.TXT  1.1  14 years  olson  add license file
COserver.pm  1.13  10 years  parrello  Removed from the SAS distribution.
ChromosomalClusters.pm  1.10  12 years  olson  fix typoe
Classes.pm  1.1  14 years  mkubal  added Organism class
Clearinghouse.pm  1.5  11 years  olson  fix clearinghouse urls.
Clearinghouse.py  1.11  11 years  olson  Fix now-broken MCS URLs.
ClientThing.pm  1.23  8 years  olson  alternate fix :-) pull the initialization of the list to the constructor, ensure...
ClosestGenomes.pm  1.2  12 years  overbeek  fix AliTrees.pm to fail gracefully
Cluster.pm  1.11  14 years  olson  Added license words.
ClusterWorker.pm  1.2  14 years  olson  Added license words.
Clustering.pm  1.6  9 years  overbeek  added double and triple linkage
CompareMR.pm  1.8  11 years  paczian  cutting comments off of functional roles
ComparedRegions.pm  1.6  12 years  parrello  Updated to improve performance.
Construct.pm  1.2  14 years  olson  Added license words.
ContigMD5.pm  1.3  12 years  olson  clone the digest so that checksum() may be called multiple times
Contigs.pm  1.1  10 years  overbeek  new Contigs.pm and compare_coding.pm
CorrTableEntry.pm  1.4  9 years  olson  Add num_matching_functions for column 19
Correspondence.pm  1.4  9 years  overbeek  correct the identity check
CorrespondenceCache.pm  1.2  9 years  parrello  Added experiment filter to "fid_experiments". Fixed correspondence cache to work...
DBKernel.pm  1.65  9 years  olson  Caching / FCGI speedup modifications.
DBrtns.pm  1.27  13 years  overbeek  Fix extra-args option to go at teh start of the list.
Diagram.pm  1.19  8 years  redwards  fixing jpeg images
DocUtils.pm  1.18  10 years  parrello  Added documentation functions to the Sapling server.
ErrorMessage.pm  1.2  9 years  olson  remove unused use CGI.
ExpressionDir.pm  1.10  8 years  olson  Support for duplicate match removal. Support for using Subsystems/{bindings,subs...
FC.pm  1.21  10 years  parrello  Fixed a bug in "co_occurrence_evidence".
FF.pm  1.35  9 years  disz  FigFam 6 digit fix
FFs.pm  1.49  9 years  olson  Clean up errors.
FFserver.pm  1.23  10 years  parrello  Removed from the SAS distribution.
FIG.pm  1.838  8 years  olson  add features_in_atomic_regulon
FIG.py  1.13  14 years  olson  Added license words.
FIG2.py  1.2  14 years  olson  Added license words.
FIGAttributes.pm  1.4  10 years  overbeek  get rid of something
FIGGenDB.pm  1.6  14 years  olson  Added license words.
FIGM.pm  1.18  9 years  olson  Add FIGV and FIGM function_of_bulk
FIGO.pm  1.34  11 years  gdpusch  Streamlined FIGV handling, and conditioning of stray debugging statements on $EN...
FIGRules.pm  1.54  10 years  olson  Optimize to_structured_english.
FIGStatisticalModels.pm  1.7  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
FIGUtilities.pm  1.2  14 years  olson  Added license words.
FIGV.pm  1.97  8 years  olson  Fix the long-standing bug where all_contigs returned the number of contigs with ...
FIG_CGI.pm  1.11  11 years  olson  Add annotation support to FIGV. Add FIGM.
FIGgjo.pm  1.3  12 years  golsen  Improve handling of multidomain query sequences in coloring of sims matches (do ...
FIGjs.pm  1.15  11 years  parrello  Fixed URL references.
FIGnet.pm  1.2  14 years  olson  Added license words.
FIGrpc.pm  1.3  14 years  olson  Added license words.
FIGtree.pm  1.3  14 years  olson  Added license words.
FS_RAST.pm  1.35  9 years  overbeek  minor updates
FigGFF.pm  1.22  12 years  redwards  Rewritten gff2tab and updated FigGFF POD/methods
FileLocking.pm  1.4  9 years  olson  Changes for DesktopRast. CVHnS: ------------------------------------------------...
FudgeTransactions.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
FullLocation.pm  1.25  10 years  parrello  Added a method to compute the total location length.
GenoGraphics.pm  1.24  10 years  golsen  Back pedal on the attempt to diagnose jpeg and png availability in GenoGraphics
GenomeIDMap.pm  1.4  14 years  olson  Added license words.
GenomeLists.pm  1.2  12 years  bartels  put in verify_dir so that the directory is produced automatically if you access ...
GenomeMeta.pm  1.16  10 years  olson  Add lock retries; probably not needed now that I think I've fixed FileLocking bu...
GenomeMetaDB.pm  1.5  10 years  jared  added update_path
GenomeMetaDatabase.pm  1.1  10 years  jared  *** empty log message ***
HTML.pm  1.130  10 years  arodri7  added links to set_prot_links
HTML.py  1.6  14 years  olson  Added license words.
HtmlPageParser.pm  1.2  14 years  olson  Added license words.
InsertIntoTree.pm  1.15  12 years  overbeek  check figfams fixes
InterfaceRoutines.pm  1.12  13 years  olson  readonly fixes; seed-run-job update to run from input file
JobScheduler.pm  1.10  8 years  olson  Put. The Scheduler. Back.
KGML.pm  1.4  12 years  olson  Hope college modifications.
KGMLData.pm  1.4  12 years  dejongh  Hope College updates
Kmers.pm  1.28  9 years  olson  fix off-by-one
KmersOld.pm  1.1  10 years  olson  version of Kmers.pm before the argument changes; made to go with figfam_server_2...
ListServerScripts.pm  1.2  8 years  parrello  Fixed to point to PUBSEED server for documentation.
LogReader.pm  1.1  11 years  parrello  Added to facilitate reading the error log.
Makefile  1.13  9 years  gdpusch  Initial checkin of module to facilitate writeing GenBank output.
MapIDs.pm  1.1  12 years  wilke  Initial version of functions to map different ids
Markups.pm  1.2  12 years  parrello  Changed POD format for better compatability with Wiki.
MergeTransactions.pm  1.3  12 years  parrello  Changed POD format for better compatability with Wiki.
MetaSubsystem.pm  1.4  11 years  bartels  added functions for genome manipulation
MgRastSims.pm  1.1  10 years  redwards  a new package for getting sims for the mg-rast
MinimalTracer.pm  1.1  9 years  olson  More FS_RAST modes & supporting code for SAS use.
NCBI_genetic_code.pm  1.3  9 years  olson  add SAS header
NCBI_taxonomy.pm  1.4  9 years  golsen  Add more formats in which abbreviated lineages can be returned. Add long form of...
NRTools.pm  1.4  10 years  olson  update to new metadata standard
NewGenome.pm  1.80  10 years  parrello  Protected a "new FIG" in open code with an eval. THIS MUST BE FIXED.
Observation.pm  1.83  9 years  redwards  correcting web links
OddStarts_ref.pm  1.1  11 years  overbeek  add the ability to find TIF3
Overlap.pm  1.4  12 years  parrello  Changed POD format for better compatability with Wiki.
P2P.pm  1.31  14 years  olson  Added license words.
P2Pupdate.pm  1.62  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
PHOB.pm  1.15  10 years  overbeek  switch from clustalw to muscle
PageBuilder.pm  1.14  12 years  parrello  Changed POD format for better compatability with Wiki.
ParalogResolution.pm  1.5  10 years  golsen  Modifications to support line-drawing character set in tree printer plots.
PartitionSeqs.pm  1.3  10 years  overbeek  return either scalar or list
Phage.pm  1.3  9 years  redwards  minor correction
PickFeatureSet.pm  1.2  10 years  overbeek  add .html to HTML files
PinnedRegions.pm  1.34  9 years  olson  fix unlink here too
ProtFamLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtFams.pm  1.3  10 years  arodri7  added functions and made functions work
ProtFamsLite.pm  1.2  10 years  arodri7  added functions and made functions work
ProtSims.pm  1.19  9 years  overbeek  turn off debugging print
Quality.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
RAST_submission.pm  1.28  9 years  olson  typofix
RASTserver.pm  1.23  9 years  gdpusch  Fixed bugs in and added more support for Viral and Euk jobs.
RC.pm  1.2  14 years  olson  Added license words.
README  1.1.1.1  16 years  efrank   import
RemoteCustomAttributes.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
SAP.pm  1.155  8 years  parrello  New method for features expressed in a given fraction of the experiments.
SAPserver.pm  1.14  9 years  parrello  Support for local SQLite servers.
SAPtutorial.pm  1.10  10 years  parrello  Fixed some errors in examples of ID types.
SFXlate.pm  1.119  10 years  parrello  Added "families_containing_peg".
SS.pm  1.13  10 years  parrello  More documentation cleanup.
SSU_rRNA_reps.pm  1.3  9 years  golsen  Adjust end of one reference sequence by padding it slightly.
SSserver.pm  1.17  10 years  parrello  Removed from the SAS distribution.
SUP.pm  1.2  9 years  parrello  New methods for alignment data.
SUPserver.pm  1.1  9 years  parrello  New Sapling update support.
SameFunc.pm  1.17  12 years  overbeek  fix to SameFunc.pm
SampleDir.pm  1.4  9 years  olson  More analysis fixes; user-agent setting.
SapCompareRegions.pm  1.3  9 years  olson  Change to output format; outer hash with fid => results, rows are now hashes wit...
Scenario.pm  1.10  9 years  dejongh  change scenario handling to use path_info.txt
ScriptThing.pm  1.8  9 years  parrello  Expression vector support methods.
SeedAware.pm  1.7  8 years  olson  add win32 support to executable_For
SeedDas.pm  1.22  12 years  parrello  Removed a FIG dependency that was causing duplicate-method warnings.
SeedEnv.pm  1.4  8 years  olson  Use new path to FBAModelSerer
SeedHTML.pm  1.3  10 years  olson  More distro fixes.
SeedSims.pm  1.1  11 years  overbeek  additions to support partitioning of sims
SeedUtils.pm  1.60  9 years  parrello  Adjustments to loader utilities.
SeedV.pm  1.9  9 years  gdpusch  Changed a debugging line to print to STDERR, not STDOUT; print only if VERBOSE.
ServerScripts.pm  1.5  9 years  overbeek  add summarize_MG_output
ServerThing.pm  1.73  8 years  parrello  New method for features expressed in a given fraction of the experiments.
Signatures.pm  1.2  9 years  parrello  Various POD fixes.
Sim.pm  1.14  10 years  olson  Distro fixups
Sim2.pm  1.1  8 years  overbeek  tree sims
SimFC.pm  1.3  10 years  overbeek  handle deleted FIDs and failure to get translations
SproutFIG.pm  1.10  14 years  olson  Added license words.
SproutSearch.pm  1.11  14 years  olson  Added license words.
StandaloneSims.pm  1.1  11 years  olson  FIGM/FIGV changes for sims between RAST orgs.
Stats.pm  1.8  10 years  parrello  Added a method to extract saved messages.
Subsystem.pm  1.149  9 years  olson  Subsystem speedup fixes.
TBLstuff.pm  1.2  10 years  overbeek  minor fixes
TemplateObject.pm  1.8  12 years  parrello  Changed POD format for better compatability with Wiki.
TestUtils.pm  1.11  10 years  parrello  Fixed display glitch for pure white space.
ToCall.pm  1.11  10 years  gdpusch  Major rewrite to prevent already-found PEGs from being re-called by every stage ...
Tracer.pm  1.132  8 years  parrello  Added an option to display configuration data to the command-line setup utility....
TransactionProcessor.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
UnvSubsys.pm  1.20  11 years  paczian  added missing "use HTML;"
UserDB.pm  1.2  14 years  olson  Added license words.
UserData.pm  1.6  12 years  parrello  Changed POD format for better compatability with Wiki.
WebColors.pm  1.16  9 years  paczian  re-added circle color scheme
WikiTools.pm  1.8  10 years  parrello  Fixed a glitch in list rendering.
WriteGenbank.pm  1.2  9 years  gdpusch  Forgot trailing "1;" :(
__init__.py  1.2  14 years  olson  Added license words.
clustaltree.pm  1.3  10 years  golsen  New super duper ala Peter T. Hooper paralog resolution interface.
collect_related_sequences.pm  1.6  9 years  golsen  Update to use SeedAware.pm (and do some general clean-up).
compare_coding.pm  1.10  9 years  golsen  Integrate use of SeedAware.pm
display_related_genomes.pm  1.2  9 years  golsen  Minor documentation changes in code.
fastDNAml.pm  1.2  14 years  olson  Added license words.
ffxtree.pm  1.23  8 years  fangfang  replace newick_subtree with rooted_newick_subtree
find_homologs.pm  1.4  9 years  golsen  use SeedAware Many changes in details of code.
find_special_proteins.pm  1.12  9 years  olson  typod the declaration
gd_tree_0.pm  1.5  9 years  golsen  Extensive reworking of color management.
gjoalign2html.pm  1.5  9 years  fangfang  SAS component
gjoalignandtree.pm  1.16  9 years  golsen  Minor consistency improvements in options, and remove redundancy in getting the ...
gjoalignment.pm  1.38  8 years  fangfang  update align_with_mafft
gjocodonlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjocolorlib.pm  1.7  9 years  golsen  Added support for luma (HSY color definitions). Changed all code so that html co...
gjogenbank.pm  1.9  8 years  golsen  Some sites do not include a blank space after "ORIGIN".
gjogff.pm  1.2  9 years  golsen  Changes to fix some bugs in GenBank format reading and writing. Changes to deal ...
gjolib.pm  1.3  10 years  olson  Add more modules to the SAS toolkit.
gjolists.pm  1.2  13 years  golsen  Updates for cleaner faster code.
gjonativecodonlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjonewicklib.pm  1.25  9 years  golsen  Change behavior of reroot_tree() to ignore distance if there is only one node.
gjoparseblast.pm  1.8  9 years  golsen  Fix two minor typographical errors in the documentation.
gjophylip.pm  1.9  9 years  golsen  Fix a cosmetic issue in the cleaning of sequences for PHYLIP.
gjosegmentlib.pm  1.2  9 years  golsen  Forgot the SAS component lines.
gjoseqlib.pm  1.25  9 years  golsen  Just some additions to the function descriptions.
gjostat.pm  1.3  9 years  golsen  Convert die to confess.
model.pm  1.36  9 years  dejongh  change scenario handling to use path_info.txt
proml.pm  1.9  10 years  golsen  Minor updates to SEED awareness.
protdist_neighbor.pm  1.1  13 years  golsen  A package for protdist and neighbor PHYLIP trees.
pyrrolysylprotein_ref_seq.pm  1.1  12 years  golsen  Add support for pyrrolysyl proteins. Also, major revision and clean-up of the t...
raedraw.pm  1.14  12 years  parrello  Changed POD heading levels.
raelib.pm  1.45  9 years  redwards  adding a pegs in order method (should probably be in FIG.pm cos way useful)
representative_sequences.pm  1.18  9 years  golsen  Huge restructuring of the rep_seq() and rep_seq2() functions. Better performanc...
selenoprotein_ref_seq.pm  1.5  10 years  golsen  Add some reference sequences and replace ; with @ in functions.
set_utilities.pm  1.3  9 years  overbeek  make SAS components
tree_neighborhood.pm  1.1  13 years  overbeek  add tree_neighbors and latest phylogeny stuff
tree_utilities.pm  1.20  10 years  olson  Add more modules to the SAS toolkit.
5S_rRNA_reps.pm (dead) No revisions exist on mgrast_dev_04012011
AdaboostClassifierAMRv1.pm (dead) No revisions exist on mgrast_dev_04012011
AdaboostClassify.pm (dead) No revisions exist on mgrast_dev_04012011
AminoAcidMatrix.pm (dead) No revisions exist on mgrast_dev_04012011
AnnotateTransactions.pm (dead) No revisions exist on mgrast_dev_04012011
AttributeTransactions.pm (dead) No revisions exist on mgrast_dev_04012011
BBasicLocation.pm (dead) No revisions exist on mgrast_dev_04012011
Bin.pm (dead) No revisions exist on mgrast_dev_04012011
BinningReports.pm (dead) No revisions exist on mgrast_dev_04012011
Biochemistry.pm (dead) No revisions exist on mgrast_dev_04012011
BlankSVP.pm (dead) No revisions exist on mgrast_dev_04012011
BlastInterface.pm (dead) No revisions exist on mgrast_dev_04012011
Boolean.pm (dead) No revisions exist on mgrast_dev_04012011
CGIAlignTreeViewer.pm (dead) No revisions exist on mgrast_dev_04012011
CallBlast.pm (dead) No revisions exist on mgrast_dev_04012011
CallByProjection.pm (dead) No revisions exist on mgrast_dev_04012011
CallScanner.pm (dead) No revisions exist on mgrast_dev_04012011
Category.pm (dead) No revisions exist on mgrast_dev_04012011
CloseGenomes.pm (dead) No revisions exist on mgrast_dev_04012011
CloseStrains.pm (dead) No revisions exist on mgrast_dev_04012011
ClusterPairs.pm (dead) No revisions exist on mgrast_dev_04012011
Cmd2HTML.pm (dead) No revisions exist on mgrast_dev_04012011
CodonUsageTable.pm (dead) No revisions exist on mgrast_dev_04012011
CommonCGI.pm (dead) No revisions exist on mgrast_dev_04012011
ConservedDomainSearch.pm (dead) No revisions exist on mgrast_dev_04012011
Corresponds.pm (dead) No revisions exist on mgrast_dev_04012011
CountTransactions.pm (dead) No revisions exist on mgrast_dev_04012011
CrossSeedLinks.pm (dead) No revisions exist on mgrast_dev_04012011
Dlits.pm (dead) No revisions exist on mgrast_dev_04012011
DrugResistanceDB.pm (dead) No revisions exist on mgrast_dev_04012011
EvalCom.pm (dead) No revisions exist on mgrast_dev_04012011
EvalCon.pm (dead) No revisions exist on mgrast_dev_04012011
EvalHelper.pm (dead) No revisions exist on mgrast_dev_04012011
FBAMODEL.pm (dead) No revisions exist on mgrast_dev_04012011
FBAMODELserver.pm (dead) No revisions exist on mgrast_dev_04012011
FBasicLocation.pm (dead) No revisions exist on mgrast_dev_04012011
FFB3.pm (dead) No revisions exist on mgrast_dev_04012011
FIGMODEL.pm (dead) No revisions exist on mgrast_dev_04012011
FIGMODELObject.pm (dead) No revisions exist on mgrast_dev_04012011
FIGMODELTable.pm (dead) No revisions exist on mgrast_dev_04012011
FIGMODELdatabase.pm (dead) No revisions exist on mgrast_dev_04012011
FIGMODELmodel.pm (dead) No revisions exist on mgrast_dev_04012011
FIGMODELweb.pm (dead) No revisions exist on mgrast_dev_04012011
FIG_Config.pm (dead) No revisions exist on mgrast_dev_04012011
FIG_Config.py (dead) No revisions exist on mgrast_dev_04012011
FQUtils.pm (dead) No revisions exist on mgrast_dev_04012011
FastA.pm (dead) No revisions exist on mgrast_dev_04012011
FastQ.pm (dead) No revisions exist on mgrast_dev_04012011
FigFam.pm (dead) No revisions exist on mgrast_dev_04012011
FigFams.pm (dead) No revisions exist on mgrast_dev_04012011
FigSubsystem.pm (dead) No revisions exist on mgrast_dev_04012011
FigSubsystemMaster.pm (dead) No revisions exist on mgrast_dev_04012011
FileIOFunctions.pm (dead) No revisions exist on mgrast_dev_04012011
Find_RNAs.pm (dead) No revisions exist on mgrast_dev_04012011
FixTransactions.pm (dead) No revisions exist on mgrast_dev_04012011
GEO.pm (dead) No revisions exist on mgrast_dev_04012011
GPUtils.pm (dead) No revisions exist on mgrast_dev_04012011
GenBankToGTO.pm (dead) No revisions exist on mgrast_dev_04012011
GenerateClusters.pm (dead) No revisions exist on mgrast_dev_04012011
GenomeChecker.pm (dead) No revisions exist on mgrast_dev_04012011
GenomeCodonUsages.pm (dead) No revisions exist on mgrast_dev_04012011
GenomeSelector.pm (dead) No revisions exist on mgrast_dev_04012011
GenomeSet.spec (dead) No revisions exist on mgrast_dev_04012011
GenomeSetClient.pm (dead) No revisions exist on mgrast_dev_04012011
GenomeSetImpl.pm (dead) No revisions exist on mgrast_dev_04012011
GenomeSetServer.pm (dead) No revisions exist on mgrast_dev_04012011
GenomeTypeObject.pm (dead) No revisions exist on mgrast_dev_04012011
Hsp.pm (dead) No revisions exist on mgrast_dev_04012011
IC50.pm (dead) No revisions exist on mgrast_dev_04012011
IDclient.pm (dead) No revisions exist on mgrast_dev_04012011
IS_Data.pm (dead) No revisions exist on mgrast_dev_04012011
IS_Subroutines.pm (dead) No revisions exist on mgrast_dev_04012011
JulianDay.pm (dead) No revisions exist on mgrast_dev_04012011
KBASE.pm (dead) No revisions exist on mgrast_dev_04012011
KBIDUtils.pm (dead) No revisions exist on mgrast_dev_04012011
KBInvoke.pm (dead) No revisions exist on mgrast_dev_04012011
KBRpcContext.pm (dead) No revisions exist on mgrast_dev_04012011
KBaseCodonUsage.pm (dead) No revisions exist on mgrast_dev_04012011
KmerClassifier.pm (dead) No revisions exist on mgrast_dev_04012011
KmerClient.pm (dead) No revisions exist on mgrast_dev_04012011
KmerDb.pm (dead) No revisions exist on mgrast_dev_04012011
KmerGutsNet.pm (dead) No revisions exist on mgrast_dev_04012011
KmerMgr.pm (dead) No revisions exist on mgrast_dev_04012011
KmerRepGenomes.pm (dead) No revisions exist on mgrast_dev_04012011
Kmers2013.pm (dead) No revisions exist on mgrast_dev_04012011
LinksUI.pm (dead) No revisions exist on mgrast_dev_04012011
MD5Computer.pm (dead) No revisions exist on mgrast_dev_04012011
MODELserv.pm (dead) No revisions exist on mgrast_dev_04012011
MODELserv_client.pm (dead) No revisions exist on mgrast_dev_04012011
MSSeedSupport.pm (dead) No revisions exist on mgrast_dev_04012011
MapToRef.pm (dead) No revisions exist on mgrast_dev_04012011
MissingRoles.pm (dead) No revisions exist on mgrast_dev_04012011
MoveAliases.pm (dead) No revisions exist on mgrast_dev_04012011
NCBI_sequence.pm (dead) No revisions exist on mgrast_dev_04012011
Nov_2016_AMR_Classifiers.pm (dead) No revisions exist on mgrast_dev_04012011
P3Contigs.pm (dead) No revisions exist on mgrast_dev_04012011
P3DataAPI.pm (dead) No revisions exist on mgrast_dev_04012011
P3Sequences.pm (dead) No revisions exist on mgrast_dev_04012011
P3Signatures.pm (dead) No revisions exist on mgrast_dev_04012011
P3Utils.pm (dead) No revisions exist on mgrast_dev_04012011
P3WorkspaceClient.pm (dead) No revisions exist on mgrast_dev_04012011
PG.pm (dead) No revisions exist on mgrast_dev_04012011
ParseDate.pm (dead) No revisions exist on mgrast_dev_04012011
ParseSIBEnzyme.pm (dead) No revisions exist on mgrast_dev_04012011
PersistentSets.pm (dead) No revisions exist on mgrast_dev_04012011
PredictTaxonID.pm (dead) No revisions exist on mgrast_dev_04012011
Prodigal.pm (dead) No revisions exist on mgrast_dev_04012011
PropagateGBMetadata.pm (dead) No revisions exist on mgrast_dev_04012011
Prot_reps_drug_resistance.pm (dead) No revisions exist on mgrast_dev_04012011
RASTlib.pm (dead) No revisions exist on mgrast_dev_04012011
RNA_reps_5S_rRNA.pm (dead) No revisions exist on mgrast_dev_04012011
RNA_reps_LSU_rRNA.pm (dead) No revisions exist on mgrast_dev_04012011
RNA_reps_SSU_rRNA.pm (dead) No revisions exist on mgrast_dev_04012011
ReactionPath.pm (dead) No revisions exist on mgrast_dev_04012011
RepGenome.pm (dead) No revisions exist on mgrast_dev_04012011
RiboProtQC.pm (dead) No revisions exist on mgrast_dev_04012011
RoleParse.pm (dead) No revisions exist on mgrast_dev_04012011
RoleRule.pm (dead) No revisions exist on mgrast_dev_04012011
RoleRuleSubstring.pm (dead) No revisions exist on mgrast_dev_04012011
SEED.spec (dead) No revisions exist on mgrast_dev_04012011
SEEDClient.pm (dead) No revisions exist on mgrast_dev_04012011
SEEDImpl.pm (dead) No revisions exist on mgrast_dev_04012011
SEEDServer.pm (dead) No revisions exist on mgrast_dev_04012011
SRAlib.pm (dead) No revisions exist on mgrast_dev_04012011
SaplingAlignmentPsiBLAST.pm (dead) No revisions exist on mgrast_dev_04012011
SaplingCodonUsage.pm (dead) No revisions exist on mgrast_dev_04012011
SaplingGenomeData.pm (dead) No revisions exist on mgrast_dev_04012011
ScriptUtils.pm (dead) No revisions exist on mgrast_dev_04012011
SeedAlignAndTreeToKBase.pm (dead) No revisions exist on mgrast_dev_04012011
SeedCodonUsage.pm (dead) No revisions exist on mgrast_dev_04012011
SeedCodonUsageToKBase.pm (dead) No revisions exist on mgrast_dev_04012011
SeedSearch.pm (dead) No revisions exist on mgrast_dev_04012011
SeedURLs.pm (dead) No revisions exist on mgrast_dev_04012011
SeqStore.pm (dead) No revisions exist on mgrast_dev_04012011
ServComplex.pm (dead) No revisions exist on mgrast_dev_04012011
ServFIGfam.pm (dead) No revisions exist on mgrast_dev_04012011
ServFeature.pm (dead) No revisions exist on mgrast_dev_04012011
ServGenome.pm (dead) No revisions exist on mgrast_dev_04012011
ServIndex.pm (dead) No revisions exist on mgrast_dev_04012011
ServOTU.pm (dead) No revisions exist on mgrast_dev_04012011
ServReaction.pm (dead) No revisions exist on mgrast_dev_04012011
ServRole.pm (dead) No revisions exist on mgrast_dev_04012011
ServSubsysRow.pm (dead) No revisions exist on mgrast_dev_04012011
ServicesUtils.pm (dead) No revisions exist on mgrast_dev_04012011
SimCompute.pm (dead) No revisions exist on mgrast_dev_04012011
SimsTable.pm (dead) No revisions exist on mgrast_dev_04012011
StrepRepeats.pm (dead) No revisions exist on mgrast_dev_04012011
SubsystemPrimer.pm (dead) No revisions exist on mgrast_dev_04012011
SubsystemPrimer2SS.pm (dead) No revisions exist on mgrast_dev_04012011
SubsystemProjector.pm (dead) No revisions exist on mgrast_dev_04012011
SwissProtUtils.pm (dead) No revisions exist on mgrast_dev_04012011
TabFile.pm (dead) No revisions exist on mgrast_dev_04012011
TableCell.pm (dead) No revisions exist on mgrast_dev_04012011
TaxUtils.pm (dead) No revisions exist on mgrast_dev_04012011
TetraMap.pm (dead) No revisions exist on mgrast_dev_04012011
TetraProfile.pm (dead) No revisions exist on mgrast_dev_04012011
TimeZone.pm (dead) No revisions exist on mgrast_dev_04012011
Tpn_Int_Reps.pm (dead) No revisions exist on mgrast_dev_04012011
TraceObject.pm (dead) No revisions exist on mgrast_dev_04012011
TreeFC.pm (dead) No revisions exist on mgrast_dev_04012011
Universal_Seqs.pm (dead) No revisions exist on mgrast_dev_04012011
UpdateServer.pm (dead) No revisions exist on mgrast_dev_04012011
WriteEMBL.pm (dead) No revisions exist on mgrast_dev_04012011
align_and_tree_test.pm (dead) No revisions exist on mgrast_dev_04012011
bidir_best_hits.pm (dead) No revisions exist on mgrast_dev_04012011
crispr.pm (dead) No revisions exist on mgrast_dev_04012011
find_tRNAs.pm (dead) No revisions exist on mgrast_dev_04012011
genome_frequencies.pm (dead) No revisions exist on mgrast_dev_04012011
gjoavllib.pm (dead) No revisions exist on mgrast_dev_04012011
gjocluster.pm (dead) No revisions exist on mgrast_dev_04012011
gjocontigmap.pm (dead) No revisions exist on mgrast_dev_04012011
gjocontigs.pm (dead) No revisions exist on mgrast_dev_04012011
high_expression_ref_ab.pm (dead) No revisions exist on mgrast_dev_04012011
make_close_strain_family_tabs.pl (dead) No revisions exist on mgrast_dev_04012011
make_subsys_based_families.pl (dead) No revisions exist on mgrast_dev_04012011
match_to_axes.pm (dead) No revisions exist on mgrast_dev_04012011
merge_families.pl (dead) No revisions exist on mgrast_dev_04012011
overlap_resolution.pm (dead) No revisions exist on mgrast_dev_04012011
pubmed.tt (dead) No revisions exist on mgrast_dev_04012011

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