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Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 25 23:22:54 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
CVS Tags: HEAD
Changes since 1.2: +6 -1 lines
Diff to previous 1.2
Fixed the conservation script bug thanks to Bob.
Added category codes instructions page.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 23 03:32:58 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
Changes since 1.1: +63 -14 lines
Diff to previous 1.1
Added new algorithm for computing degree of sequence conservation.

The algorithm looks for the homologs of one peg in 10 fixed organisms,
and uses clustalw to align the 10 sequences. Conservation value is then
calculated based on the aligned fasta file.

The algorithm decides which 10 organisms to compare based on whether
this peg belongs to a gram positive bacteria or not.

cons_orgs_list1.txt: Firmicutes
cons_orgs_list2.txt: Proteobacteria

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 10 21:24:19 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
Pipeline for generating a DrugTargets table based on user input gene search keys.

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