[Bio] / DrugTargets / find_homologs_in.pl Repository:
ViewVC logotype

Log of /DrugTargets/find_homologs_in.pl

Parent Directory Parent Directory

Links to HEAD: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 23 03:32:58 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
Added new algorithm for computing degree of sequence conservation.

The algorithm looks for the homologs of one peg in 10 fixed organisms,
and uses clustalw to align the 10 sequences. Conservation value is then
calculated based on the aligned fasta file.

The algorithm decides which 10 organisms to compare based on whether
this peg belongs to a gram positive bacteria or not.

cons_orgs_list1.txt: Firmicutes
cons_orgs_list2.txt: Proteobacteria

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3