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Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 27 20:12:03 2005 UTC (14 years, 8 months ago) by hwang
Branch: MAIN
CVS Tags: HEAD
Changes since 1.2: +1 -0 lines
Diff to previous 1.2
For the 9/18 week demo changes...

ShowTableKey.pl  -- we updated to address Rick's comments (Tag,Category explainations)
cat_coding.pl -- updated to be essential projected
ShowTable.pl -- changed *not a good pdb* to *poor pdb hit*

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 6 16:53:03 2005 UTC (14 years, 8 months ago) by jzinner
Branch: MAIN
Changes since 1.1: +3 -0 lines
Diff to previous 1.1
In ShowTable.pl -- only PDB's with e Values of less than 1e-20 are shown on screen.  Because e Values for PDB's are calculated in a manner similar to how e Values are calcalculated in the SEED we were confident that 1e-20 will return only well matching PDB's.
Many other items are derived from the PDB values so those items are not shown when the PDB match is bad.
When the PDB Free is higher than 1e-20, Don't show:  PDB Free, e Value Free, PDB Free Title, PASS ASP, PASS Wt of Largest Pocket, PDB Seq Lenght, ProtDist Score
When PDB Bound is higher than 1e-20, Don't show: PDB Bound, e Value Bound, PDB Ligand CLiBE, Total E, Van der Waals, Hydrogen Bond, EI, Solvation Energy

To cat_coding.pl I added three extra categrory types SE-K, SE-P, ES-P.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 25 23:22:54 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
Fixed the conservation script bug thanks to Bob.
Added category codes instructions page.

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