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Revision 1.20 - (view) (download) (annotate) - [select for diffs]
Mon Oct 2 21:56:15 2006 UTC (13 years, 8 months ago) by hwang
Branch: MAIN
CVS Tags: HEAD
Changes since 1.19: +1 -1 lines
Diff to previous 1.19
take out a file that no longer exists

Revision 1.19 - (view) (download) (annotate) - [select for diffs]
Tue May 16 19:06:36 2006 UTC (14 years ago) by hwang
Branch: MAIN
Changes since 1.18: +1 -1 lines
Diff to previous 1.18
Files were changed to separate the links from the text. Links need to be separated because links are out of date after awhile.
The saved text in drug_targets.pl is in a format recognized by ShowTable.pl

Revision 1.18 - (view) (download) (annotate) - [select for diffs]
Sat Sep 10 20:24:03 2005 UTC (14 years, 8 months ago) by hwang
Branch: MAIN
Changes since 1.17: +1 -5 lines
Diff to previous 1.17
ShowTableKey is a key of the categories.
ShowTable - added numerical sort, fixed getPDBs

Revision 1.17 - (view) (download) (annotate) - [select for diffs]
Sat Sep 10 15:17:51 2005 UTC (14 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.16: +4 -1 lines
Diff to previous 1.16
COmment out target for missing file.

Revision 1.16 - (view) (download) (annotate) - [select for diffs]
Tue Sep 6 19:30:45 2005 UTC (14 years, 8 months ago) by hwang
Branch: MAIN
Changes since 1.15: +1 -2 lines
Diff to previous 1.15
ShowTable.pl - changed syntax so that is won't break for "".
             - Added print statements to show user for the website what (s)he is searching for

Revision 1.15 - (view) (download) (annotate) - [select for diffs]
Tue Sep 6 16:53:03 2005 UTC (14 years, 8 months ago) by jzinner
Branch: MAIN
Changes since 1.14: +2 -0 lines
Diff to previous 1.14
In ShowTable.pl -- only PDB's with e Values of less than 1e-20 are shown on screen.  Because e Values for PDB's are calculated in a manner similar to how e Values are calcalculated in the SEED we were confident that 1e-20 will return only well matching PDB's.
Many other items are derived from the PDB values so those items are not shown when the PDB match is bad.
When the PDB Free is higher than 1e-20, Don't show:  PDB Free, e Value Free, PDB Free Title, PASS ASP, PASS Wt of Largest Pocket, PDB Seq Lenght, ProtDist Score
When PDB Bound is higher than 1e-20, Don't show: PDB Bound, e Value Bound, PDB Ligand CLiBE, Total E, Van der Waals, Hydrogen Bond, EI, Solvation Energy

To cat_coding.pl I added three extra categrory types SE-K, SE-P, ES-P.

Revision 1.14 - (view) (download) (annotate) - [select for diffs]
Fri Sep 2 02:05:06 2005 UTC (14 years, 9 months ago) by hwang
Branch: MAIN
Changes since 1.13: +1 -1 lines
Diff to previous 1.13
Added a button to allow user to save customized query to the master list. The master list can be view
by ShowTable.cgi

Revision 1.13 - (view) (download) (annotate) - [select for diffs]
Wed Aug 31 15:31:29 2005 UTC (14 years, 9 months ago) by hwang
Branch: MAIN
Changes since 1.12: +2 -1 lines
Diff to previous 1.12
Changed files to incorporate fangfang's and kaitlyn's script.
ShowTable.pl
	Shows and edits the tables in the archives

Revision 1.12 - (view) (download) (annotate) - [select for diffs]
Thu Aug 25 23:22:54 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
Changes since 1.11: +1 -1 lines
Diff to previous 1.11
Fixed the conservation script bug thanks to Bob.
Added category codes instructions page.

Revision 1.11 - (view) (download) (annotate) - [select for diffs]
Tue Aug 23 04:30:13 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Fixed a bug in Makefile

Revision 1.10 - (view) (download) (annotate) - [select for diffs]
Wed Aug 10 21:24:19 2005 UTC (14 years, 9 months ago) by fangfang
Branch: MAIN
Changes since 1.9: +2 -2 lines
Diff to previous 1.9
Pipeline for generating a DrugTargets table based on user input gene search keys.

Revision 1.9 - (view) (download) (annotate) - [select for diffs]
Tue Jul 5 16:13:18 2005 UTC (14 years, 10 months ago) by fangfang
Branch: MAIN
Changes since 1.8: +2 -2 lines
Diff to previous 1.8
*** empty log message ***

Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Tue Jul 5 15:25:20 2005 UTC (14 years, 10 months ago) by hwang
Branch: MAIN
Changes since 1.7: +2 -2 lines
Diff to previous 1.7
Took out files that are not associated with drugtargets

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Tue Jul 5 06:21:54 2005 UTC (14 years, 10 months ago) by fangfang
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
*** empty log message ***

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Fri Jul 1 20:00:02 2005 UTC (14 years, 11 months ago) by hwang
Branch: MAIN
Changes since 1.5: +1 -0 lines
Diff to previous 1.5
Changed DrugTargetsWebDetails to have data to be taken from $FIG_Config::fig

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Thu Jun 30 21:09:25 2005 UTC (14 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.4: +2 -4 lines
Diff to previous 1.4
Makefile fix.

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Wed Jun 29 19:58:43 2005 UTC (14 years, 11 months ago) by hwang
Branch: MAIN
Changes since 1.3: +1 -1 lines
Diff to previous 1.3
Added length of the peg sequence to a column in DrugTargetsWebDetails.pl

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Wed Jun 29 19:47:59 2005 UTC (14 years, 11 months ago) by hgao
Branch: MAIN
Changes since 1.2: +3 -1 lines
Diff to previous 1.2
The fig function of is added to the column of DrugTargets table.

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Wed Jun 29 18:22:13 2005 UTC (14 years, 11 months ago) by hwang
Branch: MAIN
Changes since 1.1: +2 -2 lines
Diff to previous 1.1
Added a new file - DrugTargetsWebDetails

Makefile: added the file

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Tue Jun 28 21:02:31 2005 UTC (14 years, 11 months ago) by hwang
Branch: MAIN
kaitlyn
adding files

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