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Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 31 15:31:29 2005 UTC (14 years, 3 months ago) by hwang
Branch: MAIN
CVS Tags: HEAD
Changes since 1.14: +36 -1 lines
Diff to previous 1.14
Changed files to incorporate fangfang's and kaitlyn's script.
ShowTable.pl
	Shows and edits the tables in the archives

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 20 20:47:53 2005 UTC (14 years, 4 months ago) by xshi
Branch: MAIN
Changes since 1.13: +54 -2 lines
Diff to previous 1.13
Add attribute PDB_LIGAND_CLiBE to the table

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 6 06:45:06 2005 UTC (14 years, 5 months ago) by fangfang
Branch: MAIN
Changes since 1.12: +6 -2 lines
Diff to previous 1.12
Added a new column of "Conservation of Seqs"

The conservation value is between 0 and 1 (maximum conservation). Values > 0.8 are in highlighted in bold font.
For each peg sequence, we look for the top 20 similar sequences from different Gram Positive organisms and align them via clustal. Degree of conservation is calculated for each aligned column using a simple measure, and the final conservation value is their weighted average.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 5 16:51:28 2005 UTC (14 years, 5 months ago) by fangfang
Branch: MAIN
Changes since 1.11: +3 -2 lines
Diff to previous 1.11
PEGs that have no PDB entry hit would have "NONE" in the text columns
and "-" in the number columns.

For the "PDB SeqLen" column, cells are highlighted in bold font if the PDB
SeqLen and the PEG SeqLen are not very different. ( |a - b| < min{a, b} / 2 )

For the "ProtDist" column, cells are in bold font if the protdist value < 0.3

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 5 06:21:43 2005 UTC (14 years, 5 months ago) by fangfang
Branch: MAIN
Changes since 1.10: +2 -1 lines
Diff to previous 1.10
*** empty log message ***

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 4 04:31:24 2005 UTC (14 years, 5 months ago) by fangfang
Branch: MAIN
Changes since 1.9: +78 -57 lines
Diff to previous 1.9
*** empty log message ***

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 1 20:00:02 2005 UTC (14 years, 5 months ago) by hwang
Branch: MAIN
Changes since 1.8: +28 -15 lines
Diff to previous 1.8
Changed DrugTargetsWebDetails to have data to be taken from $FIG_Config::fig

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 1 02:09:42 2005 UTC (14 years, 5 months ago) by hwang
Branch: MAIN
Changes since 1.7: +13 -11 lines
Diff to previous 1.7
kaitlyn hwang - the fasta.free data was faulty. So needed to change all data
associated with pdbs after fasta.free data was fixed.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 19:10:24 2005 UTC (14 years, 5 months ago) by xshi
Branch: MAIN
Changes since 1.6: +10 -5 lines
Diff to previous 1.6
Add url links to uni and gi numbers

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 18:01:33 2005 UTC (14 years, 5 months ago) by xshi
Branch: MAIN
Changes since 1.5: +5 -1 lines
Diff to previous 1.5
Add one column GeneBank ID(gi number)

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 17:52:56 2005 UTC (14 years, 5 months ago) by hwang
Branch: MAIN
Changes since 1.4: +5 -8 lines
Diff to previous 1.4
Deleted columns that are not relevant

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 17:40:57 2005 UTC (14 years, 5 months ago) by xshi
Branch: MAIN
Changes since 1.3: +13 -2 lines
Diff to previous 1.3
Add two columns: GeneId and UniProt ID

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 29 19:58:43 2005 UTC (14 years, 5 months ago) by hwang
Branch: MAIN
Changes since 1.2: +3 -2 lines
Diff to previous 1.2
Added length of the peg sequence to a column in DrugTargetsWebDetails.pl

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 29 19:47:59 2005 UTC (14 years, 5 months ago) by hgao
Branch: MAIN
Changes since 1.1: +5 -2 lines
Diff to previous 1.1
The fig function of is added to the column of DrugTargets table.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 29 18:22:13 2005 UTC (14 years, 5 months ago) by hwang
Branch: MAIN
Added a new file - DrugTargetsWebDetails

Makefile: added the file

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