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Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 25 23:15:41 2009 UTC (10 years, 7 months ago) by olson
Branch: MAIN
CVS Tags: HEAD, myrast_33
Changes since 1.33: +68 -39 lines
Diff to previous 1.33
Rework genome and metagenome registration code to make transactions work properly.

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Oct 17 15:03:07 2008 UTC (10 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.32: +17 -0 lines
Diff to previous 1.32
Add ping() method.

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 12 17:16:35 2008 UTC (11 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.31: +21 -0 lines
Diff to previous 1.31
Add lookup_subsystem_by_id

Revision 1.31 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 12 16:54:16 2008 UTC (11 years, 4 months ago) by olson
Branch: MAIN
Changes since 1.30: +36 -0 lines
Diff to previous 1.30
Add subsystem registry.

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 16 21:41:14 2008 UTC (11 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.29: +27 -0 lines
Diff to previous 1.29
Add metagenome taxon id registry

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 5 17:15:58 2007 UTC (12 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.28: +18 -0 lines
Diff to previous 1.28
changes for batch registration

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 9 16:43:48 2006 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.27: +3 -2 lines
Diff to previous 1.27
some minor fixes.

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 11 22:57:15 2006 UTC (13 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.26: +16 -9 lines
Diff to previous 1.26
Add_feature code

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 11 21:19:21 2006 UTC (13 years, 9 months ago) by olson
Branch: MAIN
Changes since 1.25: +118 -27 lines
Diff to previous 1.25
Collected clearinghouse updates.

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 10 16:33:03 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.24: +11 -0 lines
Diff to previous 1.24
Added Duplicate recod checking to subsystems and genome uploads

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 6 18:06:46 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.23: +24 -4 lines
Diff to previous 1.23
Added count to browser heading

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 5 16:58:31 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.22: +29 -97 lines
Diff to previous 1.22
More cleanup to services

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Thu May 5 14:07:11 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.21: +22 -64 lines
Diff to previous 1.21
Clean up services

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 3 20:18:57 2005 UTC (14 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.20: +2 -0 lines
Diff to previous 1.20
Add validation on subsystems.

Move validation code into utils::validate_package($package_file, $package_type).

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 2 21:31:43 2005 UTC (14 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.19: +7 -35 lines
Diff to previous 1.19
Factor some stuff out to utils.pm
Misc cleanup.
add 1-SUBSYSTEM type.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 29 20:41:21 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.18: +17 -0 lines
Diff to previous 1.18
added is_genome_registered

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 29 19:57:37 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.17: +13 -2 lines
Diff to previous 1.17
Fixed feature registration

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 29 18:38:14 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.16: +17 -4 lines
Diff to previous 1.16
CH fixes

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 28 20:34:32 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.15: +30 -5 lines
Diff to previous 1.15
CH

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 28 18:24:26 2005 UTC (14 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.14: +106 -146 lines
Diff to previous 1.14
Fix indentation; remove extra conflict code.

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 28 18:16:53 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.13: +171 -28 lines
Diff to previous 1.13
CH CHANGES

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 27 17:55:59 2005 UTC (14 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
make the what_is_there_by_key query also use distinct.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 27 17:46:10 2005 UTC (14 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.11: +222 -209 lines
Diff to previous 1.11
Pull the db stuff out into Clearinghouse::ch_database. This module exports db_init(). It also initializes the
contents of CH_Config to have the database stuff from FIG_Config if it's not already set. This gives us
a good default behavior while allowing modification. For instance, on my laptop which has a mysql
database for the normal SEED, the CH_Config looks like this:

package CH_Config;

$dbms = "Pg";
$db = "clearinghouse";
$dbuser = "olson";
$dbpass = "";
$dbport = "10101";
$service_url = "http://localhost/FIG/clearinghouse_services.cgi";
$dir = "/Users/olson/chdir";

Do some misc cleanup on the services.

Add gen_seed_tables, which generates a postgres input file (suitable for loading with
'psql -f load_seed.sql') for the genomes in the current seed.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 21 15:38:38 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.10: +2 -2 lines
Diff to previous 1.10
added date to browser

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 20 19:54:31 2005 UTC (14 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.9: +7 -0 lines
Diff to previous 1.9
Replace hardcoded service url with $CH_Config::service_url.

Unset HTTP_HOST in the service so that FIG::cgi_url  works.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 19 20:55:08 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.8: +89 -42 lines
Diff to previous 1.8
Many changes in code walkthrough

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 18 16:10:46 2005 UTC (14 years, 5 months ago) by disz
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7
*** empty log message ***

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 15 21:07:55 2005 UTC (14 years, 6 months ago) by disz
Branch: MAIN
Changes since 1.6: +54 -0 lines
Diff to previous 1.6
More work on upload

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 13 21:17:28 2005 UTC (14 years, 6 months ago) by disz
Branch: MAIN
Changes since 1.5: +7 -1 lines
Diff to previous 1.5
Added upload capability

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 13 19:08:46 2005 UTC (14 years, 6 months ago) by disz
Branch: MAIN
Changes since 1.4: +29 -20 lines
Diff to previous 1.4
Added vanilla browser capability

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 13:21:25 2005 UTC (14 years, 6 months ago) by disz
Branch: MAIN
Changes since 1.3: +43 -11 lines
Diff to previous 1.3
misc fixes

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Apr 8 08:32:21 2005 UTC (14 years, 6 months ago) by disz
Branch: MAIN
Changes since 1.2: +11 -9 lines
Diff to previous 1.2
fixed blank preceding select statement

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 7 17:31:34 2005 UTC (14 years, 6 months ago) by olson
Branch: MAIN
Changes since 1.1: +54 -76 lines
Diff to previous 1.1
Move over to new DBrtns stuff.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 7 16:21:54 2005 UTC (14 years, 6 months ago) by disz
Branch: MAIN
testing routines for clearinghouse code

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