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Revision 1.1 - (download) (as text) (annotate)
Fri Apr 9 14:48:10 2004 UTC (15 years, 6 months ago) by efrank
Branch: MAIN
CVS Tags: post-st-migration2, mass-spec-01, sc2004-3, mass-spec-02, post-st-migration, forRick-14Jul04-1, forRick-14Jul04-0, sc2004-4, sc04-finalDay, sc2004-2, sc2004-1, sc2004-0, HEAD
Modified files:
	adjustments in data sizes and little details
	destroyBss can probably be simplified.

Added files:
	ReloadBssData loads data into an empty database.  It calls
	the other guys to do the work:  Aiba*, glyc*, loadbuchnera*, testCas*

	buildNewBssCatalog.py:  copies data from old style catalog to new.


1. destroyBss                   deletes EVERYTHING
2. sqlplus
        @Rebuild                rebuilds schema.  reloads some reactions etc.
3. ReloadBssData                puts some data back in...OLD style catalog
4. buildNewBssCatalog.py        copies data from old style catalog to new.

import loadBss
b=loadBss.bss()
b.addReco( "KEGG Buchnera", "KEGG Buchnera")
b.addREChild( "Glycolysis / Gluconeogenesis","KEGG Buchnera")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 2R-2-Hydroxy-3-phosphonooxy-propanal <-> 1 3-Phospho-D-glyceroylphosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 2R-2-Hydroxy-3-phosphonooxy-propanal <-> 1 3-Phospho-D-glyceroylphosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 2-Phospho-D-glycerate <-> 1 Phosphoenolpyruvate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 2R-2-Hydroxy-3-phosphonooxy-propanal <-> 1 Glyceronephosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 alpha-D-Glucose6-phosphate <-> 1 beta-D-Fructose6-phosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 alpha-D-Glucose6-phosphate <-> 1 beta-D-Glucose6-phosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 beta-D-Glucose6-phosphate <-> 1 beta-D-Fructose6-phosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 2-Phospho-D-glycerate <-> 1 3-Phospho-D-glycerate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 Pyruvate + 1 Thiamindiphosphate <-> 1 2-alpha-Hydroxyethylthiaminediphosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 2-alpha-Hydroxyethylthiaminediphosphate + 1 Lipoamide -> 1 Thiamindiphosphate + 1 S-Acetyldihydrolipoamide")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 Dihydrolipoamide -> 1 Lipoamide")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 Acetyl-CoA + 1 Dihydrolipoamide <-> 1 S-Acetyldihydrolipoamide")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 beta-D-Fructose6-phosphate -> 1 beta-D-Fructose16-bisphosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 Pyruvate <-> 1 Phosphoenolpyruvate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 3-Phospho-D-glycerate <-> 1 3-Phospho-D-glyceroylphosphate")
b.addRx( "Glycolysis / Gluconeogenesis"," 1 beta-D-Fructose16-bisphosphate <-> 1 2R-2-Hydroxy-3-phosphonooxy-propanal + 1 Glyceronephosphate")
b.addREChild( "Citrate cycle (TCA cycle)","KEGG Buchnera")
b.addRx( "Citrate cycle (TCA cycle)"," 1 2-Oxoglutarate + 1 Thiamindiphosphate <-> 1 3-Carboxy-1-hydroxypropyl-ThPP + 1 CO2")
b.addRx( "Citrate cycle (TCA cycle)"," 1 3-Carboxy-1-hydroxypropyl-ThPP + 1 Lipoamide <-> 1 S-Succinyldihydrolipoamide + 1 Thiamindiphosphate")
b.addRx( "Citrate cycle (TCA cycle)"," 1 Dihydrolipoamide <-> 1 Lipoamide")
b.addRx( "Citrate cycle (TCA cycle)"," 1 S-Succinyldihydrolipoamide <-> 1 Succinyl-CoA + 1 Dihydrolipoamide")
b.addRx( "Citrate cycle (TCA cycle)"," 1 Citrate + 1 CoA <-> 1 Acetyl-CoA + 1 Oxaloacetate")
b.addREChild( "Pentose phosphate pathway","KEGG Buchnera")
b.addRx( "Pentose phosphate pathway"," 1 6-Phospho-D-gluconate <-> 1 D-Ribulose5-phosphate + 1 CO2")
b.addRx( "Pentose phosphate pathway"," 1 alpha-D-Glucose6-phosphate -> 1 D-Glucono-15-lactone6-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 alpha-D-Glucose6-phosphate <-> 1 beta-D-Fructose6-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 D-Ribose5-phosphate <-> 1 D-Ribose1-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 2-Deoxy-D-ribose1-phosphate <-> 1 2-Deoxy-D-ribose5-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 D-Sedoheptulose7-phosphate + 1 2R-2-Hydroxy-3-phosphonooxy-propanal <-> 1 D-Ribose5-phosphate + 1 D-Xylulose5-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 beta-D-Fructose6-phosphate + 1 2R-2-Hydroxy-3-phosphonooxy-propanal <-> 1 D-Erythrose4-phosphate + 1 D-Xylulose5-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 D-Sedoheptulose7-phosphate + 1 2R-2-Hydroxy-3-phosphonooxy-propanal <-> 1 D-Erythrose4-phosphate + 1 D-Fructose6-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 beta-D-Fructose6-phosphate <-> 1 beta-D-Fructose16-bisphosphate")
b.addRx( "Pentose phosphate pathway"," 1 D-Ribose5-phosphate <-> 1 5-Phospho-alpha-D-ribose1-diphosphate")
b.addRx( "Pentose phosphate pathway"," 1 beta-D-Fructose16-bisphosphate <-> 1 2R-2-Hydroxy-3-phosphonooxy-propanal")
b.addRx( "Pentose phosphate pathway"," 1 D-Ribulose5-phosphate <-> 1 D-Xylulose5-phosphate")
b.addRx( "Pentose phosphate pathway"," 1 D-Ribose5-phosphate <-> 1 D-Ribulose5-phosphate")
b.addREChild( "Galactose metabolism","KEGG Buchnera")
b.addRx( "Galactose metabolism"," 1 3-Keto-beta-D-galactose <-> 1 beta-D-Galactose")
b.addRx( "Galactose metabolism"," 1 D-Tagatose6-phosphate <-> 1 D-Tagatose16-bisphosphate")
b.addRx( "Galactose metabolism"," 1 D-Tagatose6-phosphate <-> 1 D-Tagatose16-bisphosphate")
b.addRx( "Galactose metabolism"," 1 D-Tagatose6-phosphate <-> 1 D-Tagatose16-bisphosphate")
b.addRx( "Galactose metabolism"," 1 D-Tagatose6-phosphate <-> 1 D-Tagatose16-bisphosphate")
b.addREChild( "Fatty acid biosynthesis (path 1)","KEGG Buchnera")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 3R-3-Hydroxybutanoyl-acyl-carrierprotein <-> 1 Acetoacetyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 3-Oxohexanoyl-acp <-> 1 R-3-Hydroxyhexanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 trans-Dec-2-enoyl-acp <-> 1 Decanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 trans-Dodec-2-enoyl-acp <-> 1 Dodecanoyl-acyl-carrierprotein")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 trans-Tetradec-2-enoyl-acp <-> 1 Tetradecanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 trans-Hexadec-2-enoyl-acp <-> 1 Hexadecanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Acetyl-CoA + 1 Acyl-carrierprotein -> 1 Acetyl-acyl-carrierprotein")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Acetyl-acyl-carrierprotein + 1 Malonyl-acyl-carrierprotein -> 1 Acetoacetyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Butyryl-acp + 1 Malonyl-acyl-carrierprotein -> 1 3-Oxohexanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Hexanoyl-acp + 1 Malonyl-acyl-carrierprotein -> 1 3-Oxooctanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Octanoyl-acp + 1 Malonyl-acyl-carrierprotein -> 1 3-Oxodecanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Decanoyl-acp + 1 Malonyl-acyl-carrierprotein -> 1 3-Oxododecanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 3-Oxooctanoyl-acp <-> 1 3R-3-Hydroxyoctanoyl-acyl-carrierprotein")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Dodecanoyl-acyl-carrierprotein + 1 Malonyl-acyl-carrierprotein -> 1 3-Oxotetradecanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 Tetradecanoyl-acp + 1 Malonyl-acyl-carrierprotein -> 1 3-Oxohexadecanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 3-Oxodecanoyl-acp <-> 1 3R-3-Hydroxydecanoyl-acyl-carrierprotein")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 3-Oxododecanoyl-acp <-> 1 R-3-Hydroxydodecanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 3-Oxotetradecanoyl-acp <-> 1 3R-3-Hydroxytetradecanoyl-acyl-carrierprotein")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 3-Oxohexadecanoyl-acp <-> 1 3R-3-Hydroxypalmitoyl-acyl-carrierprotein")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 But-2-enoyl-acyl-carrierprotein <-> 1 Butyryl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 trans-Hex-2-enoyl-acp <-> 1 Hexanoyl-acp")
b.addRx( "Fatty acid biosynthesis (path 1)"," 1 trans-Oct-2-enoyl-acp <-> 1 Octanoyl-acp")
b.addREChild( "Oxidative phosphorylation","KEGG Buchnera")
b.addRx( "Oxidative phosphorylation"," 1 NADH <-> 1 NAD_plus_")
b.addRx( "Oxidative phosphorylation"," 1 Pyrophosphate -> 1 Orthophosphate")
b.addREChild( "Urea cycle and metabolism of amino groups","KEGG Buchnera")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 N-Acetyl-L-glutamate5-semialdehyde <-> 1 N-Acetyl-L-glutamate5-phosphate")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 Carbamoylphosphate + 1 L-Ornithine -> 1 L-Citrulline")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 L-Glutamate -> 1 N-Acetyl-L-glutamate")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 Putrescine -> 1 Spermidine")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 N2-Acetyl-L-ornithine <-> 1 N-Acetyl-L-glutamate5-semialdehyde")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 N-Acetyl-L-glutamate -> 1 N-Acetyl-L-glutamate5-phosphate")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 N2-Acetyl-L-ornithine -> 1 L-Ornithine")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 N-L-Argininosuccinate -> 1 Fumarate + 1 L-Arginine")
b.addRx( "Urea cycle and metabolism of amino groups"," 1 L-Citrulline + 1 L-Aspartate -> 1 N-L-Argininosuccinate")
b.addREChild( "Purine metabolism","KEGG Buchnera")
b.addRx( "Purine metabolism"," 1 GMP -> 1 IMP")
b.addRx( "Purine metabolism"," 1 dGDP -> 1 GDP")
b.addRx( "Purine metabolism"," 1 Deoxyinosine -> 1 Hypoxanthine")
b.addRx( "Purine metabolism"," 1 Hypoxanthine <-> 1 IMP")
b.addRx( "Purine metabolism"," 1 IMP <-> 1 Hypoxanthine")
b.addRx( "Purine metabolism"," 1 GMP <-> 1 Guanine")
b.addRx( "Purine metabolism"," 1 Xanthine <-> 1 Xanthosine5-phosphate")
b.addRx( "Purine metabolism"," 1 AMP <-> 1 Adenine")
b.addRx( "Purine metabolism"," 1 Guanine <-> 1 GMP")
b.addRx( "Purine metabolism"," 1 Xanthine <-> 1 Xanthosine5-phosphate")
b.addRx( "Purine metabolism"," 1 Adenylylsulfate -> 1 3-Phosphoadenylylsulfate")
b.addRx( "Purine metabolism"," 1 GTP <-> 1 GDP")
b.addRx( "Purine metabolism"," 1 dADP -> 1 ADP")
b.addRx( "Purine metabolism"," 1 ATP <-> 1 ADP")
b.addRx( "Purine metabolism"," 1 dATP <-> 1 dADP")
b.addRx( "Purine metabolism"," 1 dGTP -> 1 dGDP")
b.addRx( "Purine metabolism"," 1 AMP <-> 1 ADP")
b.addRx( "Purine metabolism"," 1 dAMP <-> 1 dADP")
b.addRx( "Purine metabolism"," 1 GMP <-> 1 GDP")
b.addRx( "Purine metabolism"," 1 dGMP <-> 1 dGDP")
b.addRx( "Purine metabolism"," 1 D-Ribose5-phosphate -> 1 5-Phospho-alpha-D-ribose1-diphosphate")
b.addRx( "Purine metabolism"," 1 Sulfate -> 1 Adenylylsulfate")
b.addRx( "Purine metabolism"," 1 RNA <-> 1 GDP")
b.addRx( "Purine metabolism"," 1 1-5-Phosphoribosyl-5-amino-4-imidazolecarboxamide -> 1 1-5-Phosphoribosyl-5-formamido-4-imidazolecarboxamide")
b.addRx( "Purine metabolism"," 1 RNA <-> 1 ADP")
b.addRx( "Purine metabolism"," 1 1-5-Phosphoribosyl-5-formamido-4-imidazolecarboxamide <-> 1 IMP")
b.addRx( "Purine metabolism"," 1 ADP -> 1 P1P4-Bis5-adenosyltetraphosphate")
b.addRx( "Purine metabolism"," 1 1-5-Phosphoribosyl-5-amino-4-N-succinocarboxamide-imidazole <-> 1 1-5-Phosphoribosyl-5-amino-4-imidazolecarboxamide")
b.addRx( "Purine metabolism"," 1 N6-12-Dicarboxyethyl-AMP -> 1 AMP")
b.addRx( "Purine metabolism"," 1 D-Ribose5-phosphate -> 1 D-Ribose1-phosphate")
b.addRx( "Purine metabolism"," 1 IMP -> 1 N6-12-Dicarboxyethyl-AMP")
b.addRx( "Purine metabolism"," 1 Adenosine <-> 1 Adenine")
b.addRx( "Purine metabolism"," 1 Adenine <-> 1 Deoxyadenosine")
b.addRx( "Purine metabolism"," 1 Inosine <-> 1 Hypoxanthine")
b.addRx( "Purine metabolism"," 1 Xanthosine <-> 1 Xanthine")
b.addRx( "Purine metabolism"," 1 Guanosine <-> 1 Guanine")
b.addRx( "Purine metabolism"," 1 Deoxyguanosine <-> 1 Guanine")
b.addREChild( "Pyrimidine metabolism","KEGG Buchnera")
b.addRx( "Pyrimidine metabolism"," 1 S-Dihydroorotate <-> 1 Orotate")
b.addRx( "Pyrimidine metabolism"," 1 Oxidizedthioredoxin -> 1 Reducedthioredoxin")
b.addRx( "Pyrimidine metabolism"," 1 Thymidine -> 1 dTMP")
b.addRx( "Pyrimidine metabolism"," 1 RNA <-> 1 UDP")
b.addRx( "Pyrimidine metabolism"," 1 RNA <-> 1 CDP")
b.addRx( "Pyrimidine metabolism"," 1 S-Dihydroorotate <-> 1 N-Carbamoyl-L-aspartate")
b.addRx( "Pyrimidine metabolism"," 1 CTP -> 1 UTP")
b.addRx( "Pyrimidine metabolism"," 1 dCTP -> 1 dUTP")
b.addRx( "Pyrimidine metabolism"," 1 dUTP -> 1 dUMP")
b.addRx( "Pyrimidine metabolism"," 1 Orotidine5-phosphate -> 1 UMP")
b.addRx( "Pyrimidine metabolism"," 1 Uracil <-> 1 Pseudouridine5-phosphate")
b.addRx( "Pyrimidine metabolism"," 1 UTP -> 1 CTP")
b.addRx( "Pyrimidine metabolism"," 1 dCDP + 1 Oxidizedthioredoxin -> 1 CDP + 1 Reducedthioredoxin")
b.addRx( "Pyrimidine metabolism"," 1 L-Glutamine -> 1 Carbamoylphosphate")
b.addRx( "Pyrimidine metabolism"," 1 dUDP + 1 Oxidizedthioredoxin -> 1 UDP + 1 Reducedthioredoxin")
b.addRx( "Pyrimidine metabolism"," 1 dUMP -> 1 dTMP")
b.addRx( "Pyrimidine metabolism"," 1 Carbamoylphosphate -> 1 N-Carbamoyl-L-aspartate")
b.addRx( "Pyrimidine metabolism"," 1 Uracil <-> 1 Deoxyuridine")
b.addRx( "Pyrimidine metabolism"," 1 Orotidine5-phosphate <-> 1 Orotate + 1 5-Phospho-alpha-D-ribose1-diphosphate")
b.addRx( "Pyrimidine metabolism"," 1 dTMP <-> 1 dTDP")
b.addRx( "Pyrimidine metabolism"," 1 dUMP <-> 1 dUDP")
b.addREChild( "Glutamate metabolism","KEGG Buchnera")
b.addRx( "Glutamate metabolism"," 1 L-Glutamine -> 1 D-Glucosamine6-phosphate")
b.addRx( "Glutamate metabolism"," 1 L-Glutamate <-> 1 D-Glutamate")
b.addRx( "Glutamate metabolism"," 1 L-Glutamate -> 1 L-Glutamyl-tRNAGlu")
b.addRx( "Glutamate metabolism"," 1 L-Glutamine -> 1 Glutaminyl-tRNA")
b.addRx( "Glutamate metabolism"," 1 L-Glutamate -> 1 L-Glutamyl-tRNAGln")
b.addRx( "Glutamate metabolism"," 1 L-Glutamate -> 1 gamma-L-Glutamyl-L-cysteine")
b.addRx( "Glutamate metabolism"," 1 gamma-L-Glutamyl-L-cysteine -> 1 Glutathione")
b.addRx( "Glutamate metabolism"," 1 L-Glutamine -> 1 NAD_plus_")
b.addRx( "Glutamate metabolism"," 1 L-Glutamine + 1 CO2 -> 1 Carbamoylphosphate")
b.addREChild( "Alanine and aspartate metabolism","KEGG Buchnera")
b.addRx( "Alanine and aspartate metabolism"," 1 L-Aspartate -> 1 N-Carbamoyl-L-aspartate")
b.addRx( "Alanine and aspartate metabolism"," 1 N-L-Argininosuccinate <-> 1 Fumarate")
b.addRx( "Alanine and aspartate metabolism"," 1 N6-12-Dicarboxyethyl-AMP <-> 1 Fumarate")
b.addRx( "Alanine and aspartate metabolism"," 1 L-Alanine <-> 1 L-Alanyl-tRNA")
b.addRx( "Alanine and aspartate metabolism"," 1 L-Aspartate -> 1 L-Aspartyl-tRNAAsp")
b.addRx( "Alanine and aspartate metabolism"," 1 L-Asparagine -> 1 L-Asparaginyl-tRNAAsn")
b.addRx( "Alanine and aspartate metabolism"," 1 L-Aspartate -> 1 L-Aspartyl-tRNAAsn")
b.addRx( "Alanine and aspartate metabolism"," 1 L-Aspartate <-> 1 N6-12-Dicarboxyethyl-AMP")
b.addRx( "Alanine and aspartate metabolism"," 1 L-Aspartate <-> 1 N-L-Argininosuccinate")
b.addREChild( "Glycine, serine and threonine metabolism","KEGG Buchnera")
b.addRx( "Glycine, serine and threonine metabolism"," 1 L-Homoserine <-> 1 L-Aspartate4-semialdehyde")
b.addRx( "Glycine, serine and threonine metabolism"," 1 Methylglyoxal -> 1 Hydroxyacetone")
b.addRx( "Glycine, serine and threonine metabolism"," 1 L-Serine -> 1 L-Seryl-tRNASer")
b.addRx( "Glycine, serine and threonine metabolism"," 1 Glycine -> 1 Glycyl-tRNAGly")
b.addRx( "Glycine, serine and threonine metabolism"," 1 L-Aspartate4-semialdehyde <-> 1 4-Phospho-L-aspartate")
b.addRx( "Glycine, serine and threonine metabolism"," 1 Dihydrolipoylprotein -> 1 Lipoylprotein")
b.addRx( "Glycine, serine and threonine metabolism"," 1 510-Methylenetetrahydrofolate + 1 Glycine <-> 1 L-Serine")
b.addRx( "Glycine, serine and threonine metabolism"," 1 3-Phosphoserine <-> 1 3-Phosphonooxypyruvate")
b.addRx( "Glycine, serine and threonine metabolism"," 1 L-Homoserine -> 1 O-Phospho-L-homoserine")
b.addRx( "Glycine, serine and threonine metabolism"," 1 L-Aspartate -> 1 4-Phospho-L-aspartate")
b.addRx( "Glycine, serine and threonine metabolism"," 1 O-Phospho-L-homoserine -> 1 L-Threonine")
b.addRx( "Glycine, serine and threonine metabolism"," 1 L-Threonine -> 1 L-Threonyl-tRNAThr")
b.addREChild( "Methionine metabolism","KEGG Buchnera")
b.addRx( "Methionine metabolism"," 1 L-Homocysteine -> 1 L-Methionine")
b.addRx( "Methionine metabolism"," 1 L-Methionyl-tRNA -> 1 N-Formylmethionyl-tRNA")
b.addRx( "Methionine metabolism"," 1 L-Methionine -> 1 S-Adenosyl-L-methionine")
b.addRx( "Methionine metabolism"," 1 S-Adenosyl-L-homocysteine <-> 1 S-Ribosyl-L-homocysteine")
b.addRx( "Methionine metabolism"," 1 N-Formyl-L-methionine <-> 1 L-Methionine")
b.addRx( "Methionine metabolism"," 1 L-Methionine -> 1 L-Methionyl-tRNA")
b.addREChild( "Cysteine metabolism","KEGG Buchnera")
b.addRx( "Cysteine metabolism"," 1 L-Serine <-> 1 O-Acetyl-L-serine")
b.addRx( "Cysteine metabolism"," 1 O-Acetyl-L-serine + 1 Sulfide -> 1 L-Cysteine")
b.addRx( "Cysteine metabolism"," 1 O-Acetyl-L-serine + 1 Thiosulfate -> 1 S-Sulfo-L-cysteine")
b.addRx( "Cysteine metabolism"," 1 O-Acetyl-L-serine -> 1 L-Cysteine")
b.addRx( "Cysteine metabolism"," 1 L-Cysteine -> 1 L-Cysteinyl-tRNACys")
b.addREChild( "Lysine biosynthesis","KEGG Buchnera")
b.addRx( "Lysine biosynthesis"," 1 L-Homoserine <-> 1 L-Aspartate4-semialdehyde")
b.addRx( "Lysine biosynthesis"," 1 L-Aspartate4-semialdehyde -> 1 4-Phospho-L-aspartate")
b.addRx( "Lysine biosynthesis"," 1 meso-26-Diaminoheptanedioate -> 1 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-26-diaminopimelate")
b.addRx( "Lysine biosynthesis"," 1 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-26-diaminopimelate -> 1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine")
b.addRx( "Lysine biosynthesis"," 1 2345-Tetrahydrodipicolinate <-> 1 23-Dihydrodipicolinate")
b.addRx( "Lysine biosynthesis"," 1 2345-Tetrahydrodipicolinate -> 1 N-Succinyl-2-L-amino-6-oxoheptanedioate")
b.addRx( "Lysine biosynthesis"," 1 L-Aspartate -> 1 4-Phospho-L-aspartate")
b.addRx( "Lysine biosynthesis"," 1 N-Succinyl-LL-26-diaminoheptanedioate -> 1 LL-26-Diaminoheptanedioate")
b.addRx( "Lysine biosynthesis"," 1 meso-26-Diaminoheptanedioate -> 1 L-Lysine")
b.addRx( "Lysine biosynthesis"," 1 L-Aspartate4-semialdehyde -> 1 23-Dihydrodipicolinate")
b.addRx( "Lysine biosynthesis"," 1 LL-26-Diaminoheptanedioate <-> 1 meso-26-Diaminoheptanedioate")
b.addRx( "Lysine biosynthesis"," 1 L-Lysine -> 1 L-Lysyl-tRNA")
b.addREChild( "Arginine and proline metabolism","KEGG Buchnera")
b.addRx( "Arginine and proline metabolism"," 1 Carbamoylphosphate + 1 L-Ornithine <-> 1 L-Citrulline")
b.addRx( "Arginine and proline metabolism"," 1 S-Adenosylmethioninamine + 1 Putrescine -> 1 5-Methylthioadenosine + 1 Spermidine")
b.addRx( "Arginine and proline metabolism"," 1 5-Methylthioadenosine -> 1 Adenine")
b.addRx( "Arginine and proline metabolism"," 1 S-Adenosyl-L-methionine -> 1 S-Adenosylmethioninamine")
b.addRx( "Arginine and proline metabolism"," 1 N-L-Argininosuccinate <-> 1 Fumarate + 1 L-Arginine")
b.addRx( "Arginine and proline metabolism"," 1 L-Proline -> 1 L-Prolyl-tRNAPro")
b.addRx( "Arginine and proline metabolism"," 1 L-Arginine -> 1 L-Arginyl-tRNAArg")
b.addRx( "Arginine and proline metabolism"," 1 L-Citrulline + 1 L-Aspartate <-> 1 N-L-Argininosuccinate")
b.addREChild( "Histidine metabolism","KEGG Buchnera")
b.addRx( "Histidine metabolism"," 1 L-Histidinol -> 1 L-Histidinal")
b.addRx( "Histidine metabolism"," 1 L-Histidinal -> 1 L-Histidine")
b.addRx( "Histidine metabolism"," 1 Npai-Methyl-L-histidine -> 1 L-Histidine")
b.addRx( "Histidine metabolism"," 1 N-5-Phospho-D-1-ribulosylformimino-5-amino-1-5-phospho-D-ribosyl-4-imidazolecarboxamide -> 1 D-erythro-1-Imidazol-4-ylglycerol3-phosphate")
b.addRx( "Histidine metabolism"," 1 Phosphoribosyl-ATP <-> 1 5-Phospho-alpha-D-ribose1-diphosphate")
b.addRx( "Histidine metabolism"," 1 L-Histidinolphosphate <-> 1 3-Imidazol-4-yl-2-oxopropylphosphate")
b.addRx( "Histidine metabolism"," 1 L-Histidinolphosphate -> 1 L-Histidinol")
b.addRx( "Histidine metabolism"," 1 Phosphoribosyl-AMP -> 1 5-5-Phospho-D-ribosylaminoformimino-1-5-phosphoribosyl-imidazole-4-carboxamide")
b.addRx( "Histidine metabolism"," 1 Phosphoribosyl-ATP -> 1 Phosphoribosyl-AMP")
b.addRx( "Histidine metabolism"," 1 D-erythro-1-Imidazol-4-ylglycerol3-phosphate -> 1 3-Imidazol-4-yl-2-oxopropylphosphate")
b.addRx( "Histidine metabolism"," 1 5-5-Phospho-D-ribosylaminoformimino-1-5-phosphoribosyl-imidazole-4-carboxamide -> 1 N-5-Phospho-D-1-ribulosylformimino-5-amino-1-5-phospho-D-ribosyl-4-imidazolecarboxamide")
b.addRx( "Histidine metabolism"," 1 L-Histidine -> 1 L-Histidyl-tRNAHis")
b.addREChild( "Tyrosine metabolism","KEGG Buchnera")
b.addRx( "Tyrosine metabolism"," 1 N-Methyltyramine -> 1 Hordenine")
b.addRx( "Tyrosine metabolism"," 1 L-Tyrosine <-> 1 3-4-Hydroxyphenylpyruvate")
b.addREChild( "Phenylalanine metabolism","KEGG Buchnera")
b.addRx( "Phenylalanine metabolism"," 1 S-Mandelate -> 1 alpha-Oxo-benzeneaceticacid")
b.addRx( "Phenylalanine metabolism"," 1 Phenylpyruvate <-> 1 L-Phenylalanine")
b.addREChild( "Tryptophan metabolism","KEGG Buchnera")
b.addRx( "Tryptophan metabolism"," 1 2-Oxoadipate -> 1 Glutaryl-CoA")
b.addRx( "Tryptophan metabolism"," 1 L-Tryptophan -> 1 L-Tryptophanyl-tRNATrp")
b.addRx( "Tryptophan metabolism"," 1 3-2-Aminoethyl-1H-indol-5-ol -> 1 5-Methoxytryptamine")
b.addRx( "Tryptophan metabolism"," 1 Xanthurenicacid -> 1 8-Methoxykynurenate")
b.addRx( "Tryptophan metabolism"," 1 3-Hydroxyanthranilate -> 1 3-Methoxyanthranilate")
b.addREChild( "beta-Alanine metabolism","KEGG Buchnera")
b.addRx( "beta-Alanine metabolism"," 1 Spermidine -> 1 Spermine")
b.addRx( "beta-Alanine metabolism"," 1 beta-Alanine -> 1 R-Pantothenate")
b.addREChild( "Aminophosphonate metabolism","KEGG Buchnera")
b.addRx( "Aminophosphonate metabolism"," 1 Phosphonoacetaldehyde -> 1 2-Hydroxypropylphosphonate")
b.addRx( "Aminophosphonate metabolism"," 1 Ceramide2-aminoethylphosphonate -> 1 CMP-2-aminoethylphosphonate")
b.addREChild( "Selenoamino acid metabolism","KEGG Buchnera")
b.addRx( "Selenoamino acid metabolism"," 1 Selenide -> 1 Selenite")
b.addRx( "Selenoamino acid metabolism"," 1 Selenomethionine -> 1 Se-Adenosylselenomethionine")
b.addRx( "Selenoamino acid metabolism"," 1 Adenylylselenate -> 1 3-Phosphoadenylylselenate")
b.addRx( "Selenoamino acid metabolism"," 1 Selenate <-> 1 Adenylylselenate")
b.addRx( "Selenoamino acid metabolism"," 1 O-Acetyl-L-serine + 1 Selenide -> 1 Selenocysteine + 1 Acetate")
b.addRx( "Selenoamino acid metabolism"," 1 Selenomethionine -> 1 Selenomethionyl-tRNAMet")
b.addREChild( "D-Glutamine and D-glutamate metabolism","KEGG Buchnera")
b.addRx( "D-Glutamine and D-glutamate metabolism"," 1 L-Glutamate <-> 1 D-Glutamate")
b.addRx( "D-Glutamine and D-glutamate metabolism"," 1 UDP-N-acetylmuramate -> 1 UDP-N-acetylmuramoyl-L-alanine")
b.addRx( "D-Glutamine and D-glutamate metabolism"," 1 UDP-N-acetylmuramoyl-L-alanine + 1 D-Glutamate -> 1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate")
b.addREChild( "Glutathione metabolism","KEGG Buchnera")
b.addRx( "Glutathione metabolism"," 1 NADP_plus_ -> 1 NADPH")
b.addRx( "Glutathione metabolism"," 1 L-Glutamate + 1 L-Cysteine -> 1 gamma-L-Glutamyl-L-cysteine")
b.addRx( "Glutathione metabolism"," 1 gamma-L-Glutamyl-L-cysteine + 1 Glycine -> 1 Glutathione")
b.addREChild( "Starch and sucrose metabolism","KEGG Buchnera")
b.addRx( "Starch and sucrose metabolism"," 1 Isomaltose -> 1 Isomaltose")
b.addREChild( "Nucleotide sugars metabolism","KEGG Buchnera")
b.addRx( "Nucleotide sugars metabolism"," 1 UDP-D-galactose -> 1 UDP-D-galacturonate")
b.addRx( "Nucleotide sugars metabolism"," 1 dTDPglucose -> 1 dTDP-D-glucuronate")
b.addRx( "Nucleotide sugars metabolism"," 1 Pentosans -> 1 L-Arabinose")
b.addRx( "Nucleotide sugars metabolism"," 1 Pentosans -> 1 D-Xylose")
b.addREChild( "Aminosugars metabolism","KEGG Buchnera")
b.addRx( "Aminosugars metabolism"," 1 UDP-N-acetylmuramate -> 1 UDP-N-acetyl-3-1-carboxyvinyl-D-glucosamine")
b.addRx( "Aminosugars metabolism"," 1 UDP-N-acetyl-D-glucosamine <-> 1 UDP-N-acetyl-3-1-carboxyvinyl-D-glucosamine")
b.addRx( "Aminosugars metabolism"," 1 D-Fructose6-phosphate <-> 1 D-Glucosamine6-phosphate")
b.addRx( "Aminosugars metabolism"," 1 N-Acetyl-D-glucosamine1-phosphate <-> 1 UDP-N-acetyl-D-glucosamine")
b.addRx( "Aminosugars metabolism"," 1 UDP-N-acetyl-D-mannosamine <-> 1 N-Acetyl-D-mannosamine")
b.addRx( "Aminosugars metabolism"," 1 D-Glucosaminide -> 1 D-Glucosamine")
b.addREChild( "Glycerolipid metabolism","KEGG Buchnera")
b.addRx( "Glycerolipid metabolism"," 1 O-Alkylglyceronephosphate -> 1 1-Alkyl-sn-glycero-3-phosphate")
b.addRx( "Glycerolipid metabolism"," 1 Phosphatidylglycerol + 1 CDPdiacylglycerol <-> 1 Cardiolipin")
b.addRx( "Glycerolipid metabolism"," 1 2R-2-Hydroxy-3-phosphonooxy-propanal <-> 1 Glyceronephosphate")
b.addRx( "Glycerolipid metabolism"," 1 O-Alkylglyceronephosphate -> 1 1-Alkyl-sn-glycero-3-phosphate")
b.addREChild( "Inositol phosphate metabolism","KEGG Buchnera")
b.addRx( "Inositol phosphate metabolism"," 1 Phosphatidylinositol-345-trisphosphate -> 1 1-Phosphatidyl-D-myo-inositol45-bisphosphate")
b.addRx( "Inositol phosphate metabolism"," 1 1D-myo-Inositol13456-pentakisphosphate -> 1 myo-Inositolhexakisphosphate")
b.addRx( "Inositol phosphate metabolism"," 1 myo-Inositol4-phosphate -> 1 myo-Inositol")
b.addRx( "Inositol phosphate metabolism"," 1 1D-myo-Inositol3-phosphate -> 1 myo-Inositol")
b.addRx( "Inositol phosphate metabolism"," 1 1L-myo-Inositol1-phosphate -> 1 myo-Inositol")
b.addREChild( "Pyruvate metabolism","KEGG Buchnera")
b.addRx( "Pyruvate metabolism"," 1 Pyruvate -> 1 Acetyl-CoA")
b.addRx( "Pyruvate metabolism"," 1 Pyruvate -> 1 Acetyl-CoA")
b.addRx( "Pyruvate metabolism"," 1 Acetyl-CoA <-> 1 Acetylphosphate")
b.addRx( "Pyruvate metabolism"," 1 Pyruvate -> 1 Acetyl-CoA")
b.addRx( "Pyruvate metabolism"," 1 Pyruvate <-> 1 Phosphoenolpyruvate")
b.addRx( "Pyruvate metabolism"," 1 Acetate <-> 1 Acetylphosphate")
b.addRx( "Pyruvate metabolism"," 1 R-S-Lactoylglutathione -> 1 R-Lactate")
b.addRx( "Pyruvate metabolism"," 1 2-Isopropylmalate -> 1 Acetyl-CoA")
b.addREChild( "Glyoxylate and dicarboxylate metabolism","KEGG Buchnera")
b.addRx( "Glyoxylate and dicarboxylate metabolism"," 1 510-Methylenetetrahydrofolate -> 1 510-Methenyltetrahydrofolate")
b.addRx( "Glyoxylate and dicarboxylate metabolism"," 1 Formate <-> 1 10-Formyltetrahydrofolate")
b.addRx( "Glyoxylate and dicarboxylate metabolism"," 1 Citrate <-> 1 Acetyl-CoA + 1 Oxaloacetate")
b.addREChild( "Butanoate metabolism","KEGG Buchnera")
b.addRx( "Butanoate metabolism"," 1 Butanal <-> 1 1-Butanol")
b.addRx( "Butanoate metabolism"," 1 Pyruvate + 1 Thiamindiphosphate -> 1 2-alpha-Hydroxyethylthiaminediphosphate")
b.addRx( "Butanoate metabolism"," 1 Pyruvate + 1 Thiamindiphosphate -> 1 2-alpha-Hydroxyethylthiaminediphosphate")
b.addRx( "Butanoate metabolism"," 1 2-Acetolactate + 1 Thiamindiphosphate -> 1 2-alpha-Hydroxyethylthiaminediphosphate")
b.addREChild( "One carbon pool by folate","KEGG Buchnera")
b.addRx( "One carbon pool by folate"," 1 Tetrahydrofolate -> 1 Dihydrofolate")
b.addRx( "One carbon pool by folate"," 1 Tetrahydrofolate -> 1 Dihydrofolate")
b.addRx( "One carbon pool by folate"," 1 510-Methenyltetrahydrofolate <-> 1 10-Formyltetrahydrofolate")
b.addRx( "One carbon pool by folate"," 1 Folicacid <-> 1 Dihydrofolate")
b.addRx( "One carbon pool by folate"," 1 510-Methylenetetrahydrofolate <-> 1 510-Methenyltetrahydrofolate")
b.addRx( "One carbon pool by folate"," 1 5-Methyltetrahydrofolate -> 1 510-Methylenetetrahydrofolate")
b.addRx( "One carbon pool by folate"," 1 510-Methylenetetrahydrofolate <-> 1 Dihydrofolate")
b.addRx( "One carbon pool by folate"," 1 510-Methylenetetrahydrofolate <-> 1 Tetrahydrofolate")
b.addRx( "One carbon pool by folate"," 1 10-Formyltetrahydrofolate <-> 1 Tetrahydrofolate")
b.addRx( "One carbon pool by folate"," 1 10-Formyltetrahydrofolate -> 1 Tetrahydrofolate")
b.addRx( "One carbon pool by folate"," 1 510-Methylenetetrahydrofolate <-> 1 Tetrahydrofolate")
b.addREChild( "Methane metabolism","KEGG Buchnera")
b.addRx( "Methane metabolism"," 1 5-Methyltetrahydrofolate -> 1 510-Methylenetetrahydrofolate")
b.addRx( "Methane metabolism"," 1 510-Methylenetetrahydrofolate + 1 Glycine -> 1 L-Serine")
b.addREChild( "Carbon fixation","KEGG Buchnera")
b.addRx( "Carbon fixation"," 1 Sedoheptulose7-phosphate + 1 2R-2-Hydroxy-3-phosphonooxy-propanal -> 1 D-Ribose5-phosphate + 1 D-Xylulose5-phosphate")
b.addRx( "Carbon fixation"," 1 Pyruvate -> 1 Phosphoenolpyruvate")
b.addRx( "Carbon fixation"," 1 3-Phospho-D-glycerate -> 1 3-Phospho-D-glyceroylphosphate")
b.addRx( "Carbon fixation"," 1 D-Ribulose5-phosphate -> 1 D-Xylulose5-phosphate")
b.addRx( "Carbon fixation"," 1 2R-2-Hydroxy-3-phosphonooxy-propanal -> 1 Glyceronephosphate")
b.addRx( "Carbon fixation"," 1 D-Ribose5-phosphate -> 1 D-Ribulose5-phosphate")
b.addREChild( "Riboflavin metabolism","KEGG Buchnera")
b.addRx( "Riboflavin metabolism"," 1 5-Amino-6-5-phosphoribitylaminouracil -> 1 5-Amino-6-5-phosphoribosylaminouracil")
b.addRx( "Riboflavin metabolism"," 1 5-Amino-6-5-phosphoribitylaminouracil -> 1 67-Dimethyl-8-1-D-ribityllumazine")
b.addRx( "Riboflavin metabolism"," 1 67-Dimethyl-8-1-D-ribityllumazine -> 1 Riboflavin + 1 4-1-D-Ribitylamino-5-amino-26-dihydroxypyrimidine")
b.addRx( "Riboflavin metabolism"," 1 Riboflavin -> 1 FMN")
b.addRx( "Riboflavin metabolism"," 1 FMN -> 1 FAD")
b.addRx( "Riboflavin metabolism"," 1 GTP -> 1 25-Diamino-6-hydroxy-4-5-phosphoribosylamino-pyrimidine")
b.addRx( "Riboflavin metabolism"," 1 25-Diamino-6-hydroxy-4-5-phosphoribosylamino-pyrimidine -> 1 5-Amino-6-5-phosphoribosylaminouracil")
b.addREChild( "Nicotinate and nicotinamide metabolism","KEGG Buchnera")
b.addRx( "Nicotinate and nicotinamide metabolism"," 1 NicotinateD-ribonucleoside <-> 1 Nicotinate")
b.addRx( "Nicotinate and nicotinamide metabolism"," 1 N-Ribosylnicotinamide -> 1 Nicotinamide")
b.addRx( "Nicotinate and nicotinamide metabolism"," 1 NicotinateD-ribonucleotide -> 1 Nicotinate")
b.addRx( "Nicotinate and nicotinamide metabolism"," 1 NAD_plus_ -> 1 NADP_plus_")
b.addRx( "Nicotinate and nicotinamide metabolism"," 1 NicotinateD-ribonucleotide <-> 1 Deamino-NAD_plus_")
b.addRx( "Nicotinate and nicotinamide metabolism"," 1 NicotinamideD-ribonucleotide <-> 1 NAD_plus_")
b.addRx( "Nicotinate and nicotinamide metabolism"," 1 Deamino-NAD_plus_ -> 1 NAD_plus_")
b.addREChild( "Pantothenate and CoA biosynthesis","KEGG Buchnera")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 23-Dihydroxy-3-methylbutanoate -> 1 2-Acetolactate")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 3-Methyl-2-oxobutanoate -> 1 2-Dehydropantoate")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 Dephospho-CoA -> 1 CoA")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 Pantetheine4-phosphate <-> 1 Dephospho-CoA")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 CoA + 1 Apo-acyl-carrierprotein -> 1 Adenosine35-bisphosphate + 1 Acyl-carrierprotein")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 2-Acetolactate -> 1 Pyruvate")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 23-Dihydroxy-3-methylbutanoate -> 1 3-Methyl-2-oxobutanoate")
b.addRx( "Pantothenate and CoA biosynthesis"," 1 R-Pantoate + 1 beta-Alanine -> 1 R-Pantothenate")
b.addREChild( "Biotin metabolism","KEGG Buchnera")
b.addRx( "Biotin metabolism"," 1 8-Amino-7-oxononanoate -> 1 78-Diaminononanoate")
b.addRx( "Biotin metabolism"," 1 Dethiobiotin -> 1 Biotin")
b.addRx( "Biotin metabolism"," 1 78-Diaminononanoate -> 1 Dethiobiotin")
b.addRx( "Biotin metabolism"," 1 Holo-carboxylase -> 1 N6-D-Biotinyl-L-lysine")
b.addREChild( "Folate biosynthesis","KEGG Buchnera")
b.addRx( "Folate biosynthesis"," 1 Tetrahydrofolate <-> 1 Dihydrofolate")
b.addRx( "Folate biosynthesis"," 1 Folicacid <-> 1 Dihydrofolate")
b.addRx( "Folate biosynthesis"," 1 Dihydropteroate -> 1 Dihydrofolate")
b.addRx( "Folate biosynthesis"," 1 Tetrahydrofolate <-> 1 Tetrahydrofolyl-Glun")
b.addRx( "Folate biosynthesis"," 1 Tetrahydrofolyl-Glun <-> 1 Tetrahydrofolyl-Glun")
b.addRx( "Folate biosynthesis"," 1 10-Formyltetrahydrofolate <-> 1 10-FormyltetrahydrofolylL-glutamate")
b.addRx( "Folate biosynthesis"," 1 10-FormyltetrahydrofolylL-glutamate <-> 1 10-Formyltetrahydrofolylpolyglutamate")
b.addRx( "Folate biosynthesis"," 1 Formamidopyrimidinenucleosidetriphosphate -> 1 25-Diaminopyrimidinenucleosidetriphosphate")
b.addRx( "Folate biosynthesis"," 1 25-Diaminopyrimidinenucleosidetriphosphate -> 1 25-Diamino-6-5-triphosphoryl-34-trihydroxy-2-oxopentyl-amino-4-oxopyrimidine")
b.addRx( "Folate biosynthesis"," 1 Folicacid <-> 1 Dihydrofolate")
b.addRx( "Folate biosynthesis"," 1 Folicacid -> 1 Tetrahydrofolate")
b.addRx( "Folate biosynthesis"," 1 Folicacid -> 1 Tetrahydrofolate")
b.addRx( "Folate biosynthesis"," 1 Dihydropteroate -> 1 Dihydrofolate")
b.addRx( "Folate biosynthesis"," 1 2-Amino-4-hydroxy-6-erythro-123-trihydroxypropyldihydropteridinetriphosphate -> 1 Dihydroneopterinphosphate")
b.addRx( "Folate biosynthesis"," 1 Dihydroneopterinphosphate -> 1 2-Amino-4-hydroxy-6-D-erythro-123-trihydroxypropyl-78-dihydropteridine")
b.addRx( "Folate biosynthesis"," 1 Dihydropteroate -> 1 Dihydrofolate")
b.addRx( "Folate biosynthesis"," 1 10-Formyltetrahydrofolate <-> 1 10-FormyltetrahydrofolylL-glutamate")
b.addREChild( "Porphyrin and chlorophyll metabolism","KEGG Buchnera")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Precorrin3A -> 1 Precorrin3B")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Biliverdin -> 1 Phytochromobilin")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 L-Glutamate -> 1 L-Glutamyl-tRNAGlu")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 UroporphyrinogenIII -> 1 Sirohydrochlorin")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Sirohydrochlorin -> 1 Sirochlorin")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Sirochlorin -> 1 Siroheme")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Porphobilinogen -> 1 Hydroxymethylbilane")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Sirohydrochlorin -> 1 Sirochlorin")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Sirochlorin -> 1 Siroheme")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Hydrogenobyrinateacdiamide -> 1 CobIIyrinateacdiamide")
b.addRx( "Porphyrin and chlorophyll metabolism"," 1 Protoporphyrin -> 1 Magnesiumprotoporphyrin")
b.addREChild( "Sulfur metabolism","KEGG Buchnera")
b.addRx( "Sulfur metabolism"," 1 Hydrogensulfide -> 1 Sulfite")
b.addRx( "Sulfur metabolism"," 1 3-Phosphoadenylylsulfate -> 1 Sulfite")
b.addRx( "Sulfur metabolism"," 1 L-Serine -> 1 O-Acetyl-L-serine")
b.addRx( "Sulfur metabolism"," 1 Adenylylsulfate <-> 1 3-Phosphoadenylylsulfate")
b.addRx( "Sulfur metabolism"," 1 Sulfate -> 1 Adenylylsulfate")
b.addRx( "Sulfur metabolism"," 1 O-Acetyl-L-serine + 1 Hydrogensulfide -> 1 L-Cysteine + 1 Acetate")
b.addREChild( "Aminoacyl-tRNA biosynthesis","KEGG Buchnera")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 L-Methionyl-tRNA + 1 10-Formyltetrahydrofolate -> 1 N-Formylmethionyl-tRNA + 1 Tetrahydrofolate")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNATyr + 1 L-Tyrosine -> 1 L-Tyrosyl-tRNATyr")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNASer + 1 L-Serine -> 1 L-Seryl-tRNASer")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAAsp + 1 L-Aspartate -> 1 L-Aspartyl-tRNAAsp")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAGly + 1 Glycine -> 1 Glycyl-tRNAGly")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAPro + 1 L-Proline -> 1 L-Prolyl-tRNAPro")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNACys + 1 L-Cysteine -> 1 L-Cysteinyl-tRNACys")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAGlu + 1 L-Glutamate -> 1 L-Glutamyl-tRNAGlu")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAGln + 1 L-Glutamine -> 1 Glutaminyl-tRNA")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAArg + 1 L-Arginine -> 1 L-Arginyl-tRNAArg")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAPhe + 1 L-Phenylalanine -> 1 L-Phenylalanyl-tRNAPhe")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAHis + 1 L-Histidine -> 1 L-Histidyl-tRNAHis")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNATrp + 1 L-Tryptophan -> 1 L-Tryptophanyl-tRNATrp")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAAsn + 1 L-Asparagine -> 1 L-Asparaginyl-tRNAAsn")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAThr + 1 L-Threonine -> 1 L-Threonyl-tRNAThr")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNALeu + 1 L-Leucine -> 1 L-Leucyl-tRNA")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAIle + 1 L-Isoleucine -> 1 L-Isoleucyl-tRNAIle")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNALys + 1 L-Lysine -> 1 L-Lysyl-tRNA")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAAla + 1 L-Alanine -> 1 L-Alanyl-tRNA")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAVal + 1 L-Valine -> 1 L-Valyl-tRNAVal")
b.addRx( "Aminoacyl-tRNA biosynthesis"," 1 tRNAMet + 1 L-Methionine -> 1 L-Methionyl-tRNA")
b.addMetabolite('1-5-Phosphoribosyl-5-amino-4-N-succinocarboxamide-imidazole', '1-5-Phosphoribosyl-5-amino-4-N-succinocarboxamide-imidazole')
b.addMetabolite('1-5-Phosphoribosyl-5-amino-4-imidazolecarboxamide', '1-5-Phosphoribosyl-5-amino-4-imidazolecarboxamide')
b.addMetabolite('1-5-Phosphoribosyl-5-formamido-4-imidazolecarboxamide', '1-5-Phosphoribosyl-5-formamido-4-imidazolecarboxamide')
b.addMetabolite('1-Alkyl-sn-glycero-3-phosphate', '1-Alkyl-sn-glycero-3-phosphate')
b.addMetabolite('1-Butanol', '1-Butanol')
b.addMetabolite('1-Phosphatidyl-D-myo-inositol45-bisphosphate', '1-Phosphatidyl-D-myo-inositol45-bisphosphate')
b.addMetabolite('10-Formyltetrahydrofolate', '10-Formyltetrahydrofolate')
b.addMetabolite('10-FormyltetrahydrofolylL-glutamate', '10-FormyltetrahydrofolylL-glutamate')
b.addMetabolite('10-Formyltetrahydrofolylpolyglutamate', '10-Formyltetrahydrofolylpolyglutamate')
b.addMetabolite('1D-myo-Inositol13456-pentakisphosphate', '1D-myo-Inositol13456-pentakisphosphate')
b.addMetabolite('1D-myo-Inositol3-phosphate', '1D-myo-Inositol3-phosphate')
b.addMetabolite('1L-myo-Inositol1-phosphate', '1L-myo-Inositol1-phosphate')
b.addMetabolite('2-Acetolactate', '2-Acetolactate')
b.addMetabolite('2-Amino-4-hydroxy-6-D-erythro-123-trihydroxypropyl-78-dihydropteridine', '2-Amino-4-hydroxy-6-D-erythro-123-trihydroxypropyl-78-dihydropteridine')
b.addMetabolite('2-Amino-4-hydroxy-6-erythro-123-trihydroxypropyldihydropteridinetriphosphate', '2-Amino-4-hydroxy-6-erythro-123-trihydroxypropyldihydropteridinetriphosphate')
b.addMetabolite('2-Dehydropantoate', '2-Dehydropantoate')
b.addMetabolite('2-Deoxy-D-ribose1-phosphate', '2-Deoxy-D-ribose1-phosphate')
b.addMetabolite('2-Deoxy-D-ribose5-phosphate', '2-Deoxy-D-ribose5-phosphate')
b.addMetabolite('2-Hydroxypropylphosphonate', '2-Hydroxypropylphosphonate')
b.addMetabolite('2-Isopropylmalate', '2-Isopropylmalate')
b.addMetabolite('2-Oxoadipate', '2-Oxoadipate')
b.addMetabolite('2-Oxoglutarate', '2-Oxoglutarate')
b.addMetabolite('2-Phospho-D-glycerate', '2-Phospho-D-glycerate')
b.addMetabolite('2-alpha-Hydroxyethylthiaminediphosphate', '2-alpha-Hydroxyethylthiaminediphosphate')
b.addMetabolite('23-Dihydrodipicolinate', '23-Dihydrodipicolinate')
b.addMetabolite('23-Dihydroxy-3-methylbutanoate', '23-Dihydroxy-3-methylbutanoate')
b.addMetabolite('2345-Tetrahydrodipicolinate', '2345-Tetrahydrodipicolinate')
b.addMetabolite('25-Diamino-6-5-triphosphoryl-34-trihydroxy-2-oxopentyl-amino-4-oxopyrimidine', '25-Diamino-6-5-triphosphoryl-34-trihydroxy-2-oxopentyl-amino-4-oxopyrimidine')
b.addMetabolite('25-Diamino-6-hydroxy-4-5-phosphoribosylamino-pyrimidine', '25-Diamino-6-hydroxy-4-5-phosphoribosylamino-pyrimidine')
b.addMetabolite('25-Diaminopyrimidinenucleosidetriphosphate', '25-Diaminopyrimidinenucleosidetriphosphate')
b.addMetabolite('2R-2-Hydroxy-3-phosphonooxy-propanal', '2R-2-Hydroxy-3-phosphonooxy-propanal')
b.addMetabolite('3-2-Aminoethyl-1H-indol-5-ol', '3-2-Aminoethyl-1H-indol-5-ol')
b.addMetabolite('3-4-Hydroxyphenylpyruvate', '3-4-Hydroxyphenylpyruvate')
b.addMetabolite('3-Carboxy-1-hydroxypropyl-ThPP', '3-Carboxy-1-hydroxypropyl-ThPP')
b.addMetabolite('3-Hydroxyanthranilate', '3-Hydroxyanthranilate')
b.addMetabolite('3-Imidazol-4-yl-2-oxopropylphosphate', '3-Imidazol-4-yl-2-oxopropylphosphate')
b.addMetabolite('3-Keto-beta-D-galactose', '3-Keto-beta-D-galactose')
b.addMetabolite('3-Methoxyanthranilate', '3-Methoxyanthranilate')
b.addMetabolite('3-Methyl-2-oxobutanoate', '3-Methyl-2-oxobutanoate')
b.addMetabolite('3-Oxodecanoyl-acp', '3-Oxodecanoyl-acp')
b.addMetabolite('3-Oxododecanoyl-acp', '3-Oxododecanoyl-acp')
b.addMetabolite('3-Oxohexadecanoyl-acp', '3-Oxohexadecanoyl-acp')
b.addMetabolite('3-Oxohexanoyl-acp', '3-Oxohexanoyl-acp')
b.addMetabolite('3-Oxooctanoyl-acp', '3-Oxooctanoyl-acp')
b.addMetabolite('3-Oxotetradecanoyl-acp', '3-Oxotetradecanoyl-acp')
b.addMetabolite('3-Phospho-D-glycerate', '3-Phospho-D-glycerate')
b.addMetabolite('3-Phospho-D-glyceroylphosphate', '3-Phospho-D-glyceroylphosphate')
b.addMetabolite('3-Phosphoadenylylselenate', '3-Phosphoadenylylselenate')
b.addMetabolite('3-Phosphoadenylylsulfate', '3-Phosphoadenylylsulfate')
b.addMetabolite('3-Phosphonooxypyruvate', '3-Phosphonooxypyruvate')
b.addMetabolite('3-Phosphoserine', '3-Phosphoserine')
b.addMetabolite('3R-3-Hydroxybutanoyl-acyl-carrierprotein', '3R-3-Hydroxybutanoyl-acyl-carrierprotein')
b.addMetabolite('3R-3-Hydroxydecanoyl-acyl-carrierprotein', '3R-3-Hydroxydecanoyl-acyl-carrierprotein')
b.addMetabolite('3R-3-Hydroxyoctanoyl-acyl-carrierprotein', '3R-3-Hydroxyoctanoyl-acyl-carrierprotein')
b.addMetabolite('3R-3-Hydroxypalmitoyl-acyl-carrierprotein', '3R-3-Hydroxypalmitoyl-acyl-carrierprotein')
b.addMetabolite('3R-3-Hydroxytetradecanoyl-acyl-carrierprotein', '3R-3-Hydroxytetradecanoyl-acyl-carrierprotein')
b.addMetabolite('4-1-D-Ribitylamino-5-amino-26-dihydroxypyrimidine', '4-1-D-Ribitylamino-5-amino-26-dihydroxypyrimidine')
b.addMetabolite('4-Phospho-L-aspartate', '4-Phospho-L-aspartate')
b.addMetabolite('5-5-Phospho-D-ribosylaminoformimino-1-5-phosphoribosyl-imidazole-4-carboxamide', '5-5-Phospho-D-ribosylaminoformimino-1-5-phosphoribosyl-imidazole-4-carboxamide')
b.addMetabolite('5-Amino-6-5-phosphoribitylaminouracil', '5-Amino-6-5-phosphoribitylaminouracil')
b.addMetabolite('5-Amino-6-5-phosphoribosylaminouracil', '5-Amino-6-5-phosphoribosylaminouracil')
b.addMetabolite('5-Methoxytryptamine', '5-Methoxytryptamine')
b.addMetabolite('5-Methyltetrahydrofolate', '5-Methyltetrahydrofolate')
b.addMetabolite('5-Methylthioadenosine', '5-Methylthioadenosine')
b.addMetabolite('5-Phospho-alpha-D-ribose1-diphosphate', '5-Phospho-alpha-D-ribose1-diphosphate')
b.addMetabolite('510-Methenyltetrahydrofolate', '510-Methenyltetrahydrofolate')
b.addMetabolite('510-Methylenetetrahydrofolate', '510-Methylenetetrahydrofolate')
b.addMetabolite('6-Phospho-D-gluconate', '6-Phospho-D-gluconate')
b.addMetabolite('67-Dimethyl-8-1-D-ribityllumazine', '67-Dimethyl-8-1-D-ribityllumazine')
b.addMetabolite('78-Diaminononanoate', '78-Diaminononanoate')
b.addMetabolite('8-Amino-7-oxononanoate', '8-Amino-7-oxononanoate')
b.addMetabolite('8-Methoxykynurenate', '8-Methoxykynurenate')
b.addMetabolite('ADP', 'ADP')
b.addMetabolite('AMP', 'AMP')
b.addMetabolite('ATP', 'ATP')
b.addMetabolite('Acetate', 'Acetate')
b.addMetabolite('Acetoacetyl-acp', 'Acetoacetyl-acp')
b.addMetabolite('Acetyl-CoA', 'Acetyl-CoA')
b.addMetabolite('Acetyl-acyl-carrierprotein', 'Acetyl-acyl-carrierprotein')
b.addMetabolite('Acetylphosphate', 'Acetylphosphate')
b.addMetabolite('Acyl-carrierprotein', 'Acyl-carrierprotein')
b.addMetabolite('Adenine', 'Adenine')
b.addMetabolite('Adenosine', 'Adenosine')
b.addMetabolite('Adenosine35-bisphosphate', 'Adenosine35-bisphosphate')
b.addMetabolite('Adenylylselenate', 'Adenylylselenate')
b.addMetabolite('Adenylylsulfate', 'Adenylylsulfate')
b.addMetabolite('Apo-acyl-carrierprotein', 'Apo-acyl-carrierprotein')
b.addMetabolite('Biliverdin', 'Biliverdin')
b.addMetabolite('Biotin', 'Biotin')
b.addMetabolite('But-2-enoyl-acyl-carrierprotein', 'But-2-enoyl-acyl-carrierprotein')
b.addMetabolite('Butanal', 'Butanal')
b.addMetabolite('Butyryl-acp', 'Butyryl-acp')
b.addMetabolite('CDP', 'CDP')
b.addMetabolite('CDPdiacylglycerol', 'CDPdiacylglycerol')
b.addMetabolite('CMP-2-aminoethylphosphonate', 'CMP-2-aminoethylphosphonate')
b.addMetabolite('CO2', 'CO2')
b.addMetabolite('CTP', 'CTP')
b.addMetabolite('Carbamoylphosphate', 'Carbamoylphosphate')
b.addMetabolite('Cardiolipin', 'Cardiolipin')
b.addMetabolite('Ceramide2-aminoethylphosphonate', 'Ceramide2-aminoethylphosphonate')
b.addMetabolite('Citrate', 'Citrate')
b.addMetabolite('CoA', 'CoA')
b.addMetabolite('CobIIyrinateacdiamide', 'CobIIyrinateacdiamide')
b.addMetabolite('D-Erythrose4-phosphate', 'D-Erythrose4-phosphate')
b.addMetabolite('D-Fructose6-phosphate', 'D-Fructose6-phosphate')
b.addMetabolite('D-Glucono-15-lactone6-phosphate', 'D-Glucono-15-lactone6-phosphate')
b.addMetabolite('D-Glucosamine', 'D-Glucosamine')
b.addMetabolite('D-Glucosamine6-phosphate', 'D-Glucosamine6-phosphate')
b.addMetabolite('D-Glucosaminide', 'D-Glucosaminide')
b.addMetabolite('D-Glutamate', 'D-Glutamate')
b.addMetabolite('D-Ribose1-phosphate', 'D-Ribose1-phosphate')
b.addMetabolite('D-Ribose5-phosphate', 'D-Ribose5-phosphate')
b.addMetabolite('D-Ribulose5-phosphate', 'D-Ribulose5-phosphate')
b.addMetabolite('D-Sedoheptulose7-phosphate', 'D-Sedoheptulose7-phosphate')
b.addMetabolite('D-Tagatose16-bisphosphate', 'D-Tagatose16-bisphosphate')
b.addMetabolite('D-Tagatose6-phosphate', 'D-Tagatose6-phosphate')
b.addMetabolite('D-Xylose', 'D-Xylose')
b.addMetabolite('D-Xylulose5-phosphate', 'D-Xylulose5-phosphate')
b.addMetabolite('D-erythro-1-Imidazol-4-ylglycerol3-phosphate', 'D-erythro-1-Imidazol-4-ylglycerol3-phosphate')
b.addMetabolite('Deamino-NAD_plus_', 'Deamino-NAD_plus_')
b.addMetabolite('Decanoyl-acp', 'Decanoyl-acp')
b.addMetabolite('Deoxyadenosine', 'Deoxyadenosine')
b.addMetabolite('Deoxyguanosine', 'Deoxyguanosine')
b.addMetabolite('Deoxyinosine', 'Deoxyinosine')
b.addMetabolite('Deoxyuridine', 'Deoxyuridine')
b.addMetabolite('Dephospho-CoA', 'Dephospho-CoA')
b.addMetabolite('Dethiobiotin', 'Dethiobiotin')
b.addMetabolite('Dihydrofolate', 'Dihydrofolate')
b.addMetabolite('Dihydrolipoamide', 'Dihydrolipoamide')
b.addMetabolite('Dihydrolipoylprotein', 'Dihydrolipoylprotein')
b.addMetabolite('Dihydroneopterinphosphate', 'Dihydroneopterinphosphate')
b.addMetabolite('Dihydropteroate', 'Dihydropteroate')
b.addMetabolite('Dodecanoyl-acyl-carrierprotein', 'Dodecanoyl-acyl-carrierprotein')
b.addMetabolite('FAD', 'FAD')
b.addMetabolite('FMN', 'FMN')
b.addMetabolite('Folicacid', 'Folicacid')
b.addMetabolite('Formamidopyrimidinenucleosidetriphosphate', 'Formamidopyrimidinenucleosidetriphosphate')
b.addMetabolite('Formate', 'Formate')
b.addMetabolite('Fumarate', 'Fumarate')
b.addMetabolite('GDP', 'GDP')
b.addMetabolite('GMP', 'GMP')
b.addMetabolite('GTP', 'GTP')
b.addMetabolite('Glutaminyl-tRNA', 'Glutaminyl-tRNA')
b.addMetabolite('Glutaryl-CoA', 'Glutaryl-CoA')
b.addMetabolite('Glutathione', 'Glutathione')
b.addMetabolite('Glyceronephosphate', 'Glyceronephosphate')
b.addMetabolite('Glycine', 'Glycine')
b.addMetabolite('Glycyl-tRNAGly', 'Glycyl-tRNAGly')
b.addMetabolite('Guanine', 'Guanine')
b.addMetabolite('Guanosine', 'Guanosine')
b.addMetabolite('Hexadecanoyl-acp', 'Hexadecanoyl-acp')
b.addMetabolite('Hexanoyl-acp', 'Hexanoyl-acp')
b.addMetabolite('Holo-carboxylase', 'Holo-carboxylase')
b.addMetabolite('Hordenine', 'Hordenine')
b.addMetabolite('Hydrogenobyrinateacdiamide', 'Hydrogenobyrinateacdiamide')
b.addMetabolite('Hydrogensulfide', 'Hydrogensulfide')
b.addMetabolite('Hydroxyacetone', 'Hydroxyacetone')
b.addMetabolite('Hydroxymethylbilane', 'Hydroxymethylbilane')
b.addMetabolite('Hypoxanthine', 'Hypoxanthine')
b.addMetabolite('IMP', 'IMP')
b.addMetabolite('Inosine', 'Inosine')
b.addMetabolite('Isomaltose', 'Isomaltose')
b.addMetabolite('L-Alanine', 'L-Alanine')
b.addMetabolite('L-Alanyl-tRNA', 'L-Alanyl-tRNA')
b.addMetabolite('L-Arabinose', 'L-Arabinose')
b.addMetabolite('L-Arginine', 'L-Arginine')
b.addMetabolite('L-Arginyl-tRNAArg', 'L-Arginyl-tRNAArg')
b.addMetabolite('L-Asparagine', 'L-Asparagine')
b.addMetabolite('L-Asparaginyl-tRNAAsn', 'L-Asparaginyl-tRNAAsn')
b.addMetabolite('L-Aspartate', 'L-Aspartate')
b.addMetabolite('L-Aspartate4-semialdehyde', 'L-Aspartate4-semialdehyde')
b.addMetabolite('L-Aspartyl-tRNAAsn', 'L-Aspartyl-tRNAAsn')
b.addMetabolite('L-Aspartyl-tRNAAsp', 'L-Aspartyl-tRNAAsp')
b.addMetabolite('L-Citrulline', 'L-Citrulline')
b.addMetabolite('L-Cysteine', 'L-Cysteine')
b.addMetabolite('L-Cysteinyl-tRNACys', 'L-Cysteinyl-tRNACys')
b.addMetabolite('L-Glutamate', 'L-Glutamate')
b.addMetabolite('L-Glutamine', 'L-Glutamine')
b.addMetabolite('L-Glutamyl-tRNAGln', 'L-Glutamyl-tRNAGln')
b.addMetabolite('L-Glutamyl-tRNAGlu', 'L-Glutamyl-tRNAGlu')
b.addMetabolite('L-Histidinal', 'L-Histidinal')
b.addMetabolite('L-Histidine', 'L-Histidine')
b.addMetabolite('L-Histidinol', 'L-Histidinol')
b.addMetabolite('L-Histidinolphosphate', 'L-Histidinolphosphate')
b.addMetabolite('L-Histidyl-tRNAHis', 'L-Histidyl-tRNAHis')
b.addMetabolite('L-Homocysteine', 'L-Homocysteine')
b.addMetabolite('L-Homoserine', 'L-Homoserine')
b.addMetabolite('L-Isoleucine', 'L-Isoleucine')
b.addMetabolite('L-Isoleucyl-tRNAIle', 'L-Isoleucyl-tRNAIle')
b.addMetabolite('L-Leucine', 'L-Leucine')
b.addMetabolite('L-Leucyl-tRNA', 'L-Leucyl-tRNA')
b.addMetabolite('L-Lysine', 'L-Lysine')
b.addMetabolite('L-Lysyl-tRNA', 'L-Lysyl-tRNA')
b.addMetabolite('L-Methionine', 'L-Methionine')
b.addMetabolite('L-Methionyl-tRNA', 'L-Methionyl-tRNA')
b.addMetabolite('L-Ornithine', 'L-Ornithine')
b.addMetabolite('L-Phenylalanine', 'L-Phenylalanine')
b.addMetabolite('L-Phenylalanyl-tRNAPhe', 'L-Phenylalanyl-tRNAPhe')
b.addMetabolite('L-Proline', 'L-Proline')
b.addMetabolite('L-Prolyl-tRNAPro', 'L-Prolyl-tRNAPro')
b.addMetabolite('L-Serine', 'L-Serine')
b.addMetabolite('L-Seryl-tRNASer', 'L-Seryl-tRNASer')
b.addMetabolite('L-Threonine', 'L-Threonine')
b.addMetabolite('L-Threonyl-tRNAThr', 'L-Threonyl-tRNAThr')
b.addMetabolite('L-Tryptophan', 'L-Tryptophan')
b.addMetabolite('L-Tryptophanyl-tRNATrp', 'L-Tryptophanyl-tRNATrp')
b.addMetabolite('L-Tyrosine', 'L-Tyrosine')
b.addMetabolite('L-Tyrosyl-tRNATyr', 'L-Tyrosyl-tRNATyr')
b.addMetabolite('L-Valine', 'L-Valine')
b.addMetabolite('L-Valyl-tRNAVal', 'L-Valyl-tRNAVal')
b.addMetabolite('LL-26-Diaminoheptanedioate', 'LL-26-Diaminoheptanedioate')
b.addMetabolite('Lipoamide', 'Lipoamide')
b.addMetabolite('Lipoylprotein', 'Lipoylprotein')
b.addMetabolite('Magnesiumprotoporphyrin', 'Magnesiumprotoporphyrin')
b.addMetabolite('Malonyl-acyl-carrierprotein', 'Malonyl-acyl-carrierprotein')
b.addMetabolite('Methylglyoxal', 'Methylglyoxal')
b.addMetabolite('N-5-Phospho-D-1-ribulosylformimino-5-amino-1-5-phospho-D-ribosyl-4-imidazolecarboxamide', 'N-5-Phospho-D-1-ribulosylformimino-5-amino-1-5-phospho-D-ribosyl-4-imidazolecarboxamide')
b.addMetabolite('N-Acetyl-D-glucosamine1-phosphate', 'N-Acetyl-D-glucosamine1-phosphate')
b.addMetabolite('N-Acetyl-D-mannosamine', 'N-Acetyl-D-mannosamine')
b.addMetabolite('N-Acetyl-L-glutamate', 'N-Acetyl-L-glutamate')
b.addMetabolite('N-Acetyl-L-glutamate5-phosphate', 'N-Acetyl-L-glutamate5-phosphate')
b.addMetabolite('N-Acetyl-L-glutamate5-semialdehyde', 'N-Acetyl-L-glutamate5-semialdehyde')
b.addMetabolite('N-Carbamoyl-L-aspartate', 'N-Carbamoyl-L-aspartate')
b.addMetabolite('N-Formyl-L-methionine', 'N-Formyl-L-methionine')
b.addMetabolite('N-Formylmethionyl-tRNA', 'N-Formylmethionyl-tRNA')
b.addMetabolite('N-L-Argininosuccinate', 'N-L-Argininosuccinate')
b.addMetabolite('N-Methyltyramine', 'N-Methyltyramine')
b.addMetabolite('N-Ribosylnicotinamide', 'N-Ribosylnicotinamide')
b.addMetabolite('N-Succinyl-2-L-amino-6-oxoheptanedioate', 'N-Succinyl-2-L-amino-6-oxoheptanedioate')
b.addMetabolite('N-Succinyl-LL-26-diaminoheptanedioate', 'N-Succinyl-LL-26-diaminoheptanedioate')
b.addMetabolite('N2-Acetyl-L-ornithine', 'N2-Acetyl-L-ornithine')
b.addMetabolite('N6-12-Dicarboxyethyl-AMP', 'N6-12-Dicarboxyethyl-AMP')
b.addMetabolite('N6-D-Biotinyl-L-lysine', 'N6-D-Biotinyl-L-lysine')
b.addMetabolite('NADH', 'NADH')
b.addMetabolite('NADPH', 'NADPH')
b.addMetabolite('NADP_plus_', 'NADP_plus_')
b.addMetabolite('NAD_plus_', 'NAD_plus_')
b.addMetabolite('Nicotinamide', 'Nicotinamide')
b.addMetabolite('NicotinamideD-ribonucleotide', 'NicotinamideD-ribonucleotide')
b.addMetabolite('Nicotinate', 'Nicotinate')
b.addMetabolite('NicotinateD-ribonucleoside', 'NicotinateD-ribonucleoside')
b.addMetabolite('NicotinateD-ribonucleotide', 'NicotinateD-ribonucleotide')
b.addMetabolite('Npai-Methyl-L-histidine', 'Npai-Methyl-L-histidine')
b.addMetabolite('O-Acetyl-L-serine', 'O-Acetyl-L-serine')
b.addMetabolite('O-Alkylglyceronephosphate', 'O-Alkylglyceronephosphate')
b.addMetabolite('O-Phospho-L-homoserine', 'O-Phospho-L-homoserine')
b.addMetabolite('Octanoyl-acp', 'Octanoyl-acp')
b.addMetabolite('Orotate', 'Orotate')
b.addMetabolite('Orotidine5-phosphate', 'Orotidine5-phosphate')
b.addMetabolite('Orthophosphate', 'Orthophosphate')
b.addMetabolite('Oxaloacetate', 'Oxaloacetate')
b.addMetabolite('Oxidizedthioredoxin', 'Oxidizedthioredoxin')
b.addMetabolite('P1P4-Bis5-adenosyltetraphosphate', 'P1P4-Bis5-adenosyltetraphosphate')
b.addMetabolite('Pantetheine4-phosphate', 'Pantetheine4-phosphate')
b.addMetabolite('Pentosans', 'Pentosans')
b.addMetabolite('Phenylpyruvate', 'Phenylpyruvate')
b.addMetabolite('Phosphatidylglycerol', 'Phosphatidylglycerol')
b.addMetabolite('Phosphatidylinositol-345-trisphosphate', 'Phosphatidylinositol-345-trisphosphate')
b.addMetabolite('Phosphoenolpyruvate', 'Phosphoenolpyruvate')
b.addMetabolite('Phosphonoacetaldehyde', 'Phosphonoacetaldehyde')
b.addMetabolite('Phosphoribosyl-AMP', 'Phosphoribosyl-AMP')
b.addMetabolite('Phosphoribosyl-ATP', 'Phosphoribosyl-ATP')
b.addMetabolite('Phytochromobilin', 'Phytochromobilin')
b.addMetabolite('Porphobilinogen', 'Porphobilinogen')
b.addMetabolite('Precorrin3A', 'Precorrin3A')
b.addMetabolite('Precorrin3B', 'Precorrin3B')
b.addMetabolite('Protoporphyrin', 'Protoporphyrin')
b.addMetabolite('Pseudouridine5-phosphate', 'Pseudouridine5-phosphate')
b.addMetabolite('Putrescine', 'Putrescine')
b.addMetabolite('Pyrophosphate', 'Pyrophosphate')
b.addMetabolite('Pyruvate', 'Pyruvate')
b.addMetabolite('R-3-Hydroxydodecanoyl-acp', 'R-3-Hydroxydodecanoyl-acp')
b.addMetabolite('R-3-Hydroxyhexanoyl-acp', 'R-3-Hydroxyhexanoyl-acp')
b.addMetabolite('R-Lactate', 'R-Lactate')
b.addMetabolite('R-Pantoate', 'R-Pantoate')
b.addMetabolite('R-Pantothenate', 'R-Pantothenate')
b.addMetabolite('R-S-Lactoylglutathione', 'R-S-Lactoylglutathione')
b.addMetabolite('RNA', 'RNA')
b.addMetabolite('Reducedthioredoxin', 'Reducedthioredoxin')
b.addMetabolite('Riboflavin', 'Riboflavin')
b.addMetabolite('S-Acetyldihydrolipoamide', 'S-Acetyldihydrolipoamide')
b.addMetabolite('S-Adenosyl-L-homocysteine', 'S-Adenosyl-L-homocysteine')
b.addMetabolite('S-Adenosyl-L-methionine', 'S-Adenosyl-L-methionine')
b.addMetabolite('S-Adenosylmethioninamine', 'S-Adenosylmethioninamine')
b.addMetabolite('S-Dihydroorotate', 'S-Dihydroorotate')
b.addMetabolite('S-Mandelate', 'S-Mandelate')
b.addMetabolite('S-Ribosyl-L-homocysteine', 'S-Ribosyl-L-homocysteine')
b.addMetabolite('S-Succinyldihydrolipoamide', 'S-Succinyldihydrolipoamide')
b.addMetabolite('S-Sulfo-L-cysteine', 'S-Sulfo-L-cysteine')
b.addMetabolite('Se-Adenosylselenomethionine', 'Se-Adenosylselenomethionine')
b.addMetabolite('Sedoheptulose7-phosphate', 'Sedoheptulose7-phosphate')
b.addMetabolite('Selenate', 'Selenate')
b.addMetabolite('Selenide', 'Selenide')
b.addMetabolite('Selenite', 'Selenite')
b.addMetabolite('Selenocysteine', 'Selenocysteine')
b.addMetabolite('Selenomethionine', 'Selenomethionine')
b.addMetabolite('Selenomethionyl-tRNAMet', 'Selenomethionyl-tRNAMet')
b.addMetabolite('Sirochlorin', 'Sirochlorin')
b.addMetabolite('Siroheme', 'Siroheme')
b.addMetabolite('Sirohydrochlorin', 'Sirohydrochlorin')
b.addMetabolite('Spermidine', 'Spermidine')
b.addMetabolite('Spermine', 'Spermine')
b.addMetabolite('Succinyl-CoA', 'Succinyl-CoA')
b.addMetabolite('Sulfate', 'Sulfate')
b.addMetabolite('Sulfide', 'Sulfide')
b.addMetabolite('Sulfite', 'Sulfite')
b.addMetabolite('Tetradecanoyl-acp', 'Tetradecanoyl-acp')
b.addMetabolite('Tetrahydrofolate', 'Tetrahydrofolate')
b.addMetabolite('Tetrahydrofolyl-Glun', 'Tetrahydrofolyl-Glun')
b.addMetabolite('Thiamindiphosphate', 'Thiamindiphosphate')
b.addMetabolite('Thiosulfate', 'Thiosulfate')
b.addMetabolite('Thymidine', 'Thymidine')
b.addMetabolite('UDP', 'UDP')
b.addMetabolite('UDP-D-galactose', 'UDP-D-galactose')
b.addMetabolite('UDP-D-galacturonate', 'UDP-D-galacturonate')
b.addMetabolite('UDP-N-acetyl-3-1-carboxyvinyl-D-glucosamine', 'UDP-N-acetyl-3-1-carboxyvinyl-D-glucosamine')
b.addMetabolite('UDP-N-acetyl-D-glucosamine', 'UDP-N-acetyl-D-glucosamine')
b.addMetabolite('UDP-N-acetyl-D-mannosamine', 'UDP-N-acetyl-D-mannosamine')
b.addMetabolite('UDP-N-acetylmuramate', 'UDP-N-acetylmuramate')
b.addMetabolite('UDP-N-acetylmuramoyl-L-alanine', 'UDP-N-acetylmuramoyl-L-alanine')
b.addMetabolite('UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-26-diaminopimelate', 'UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-26-diaminopimelate')
b.addMetabolite('UDP-N-acetylmuramoyl-L-alanyl-D-glutamate', 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamate')
b.addMetabolite('UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine', 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine')
b.addMetabolite('UMP', 'UMP')
b.addMetabolite('UTP', 'UTP')
b.addMetabolite('Uracil', 'Uracil')
b.addMetabolite('UroporphyrinogenIII', 'UroporphyrinogenIII')
b.addMetabolite('Xanthine', 'Xanthine')
b.addMetabolite('Xanthosine', 'Xanthosine')
b.addMetabolite('Xanthosine5-phosphate', 'Xanthosine5-phosphate')
b.addMetabolite('Xanthurenicacid', 'Xanthurenicacid')
b.addMetabolite('alpha-D-Glucose6-phosphate', 'alpha-D-Glucose6-phosphate')
b.addMetabolite('alpha-Oxo-benzeneaceticacid', 'alpha-Oxo-benzeneaceticacid')
b.addMetabolite('beta-Alanine', 'beta-Alanine')
b.addMetabolite('beta-D-Fructose16-bisphosphate', 'beta-D-Fructose16-bisphosphate')
b.addMetabolite('beta-D-Fructose6-phosphate', 'beta-D-Fructose6-phosphate')
b.addMetabolite('beta-D-Galactose', 'beta-D-Galactose')
b.addMetabolite('beta-D-Glucose6-phosphate', 'beta-D-Glucose6-phosphate')
b.addMetabolite('dADP', 'dADP')
b.addMetabolite('dAMP', 'dAMP')
b.addMetabolite('dATP', 'dATP')
b.addMetabolite('dCDP', 'dCDP')
b.addMetabolite('dCTP', 'dCTP')
b.addMetabolite('dGDP', 'dGDP')
b.addMetabolite('dGMP', 'dGMP')
b.addMetabolite('dGTP', 'dGTP')
b.addMetabolite('dTDP', 'dTDP')
b.addMetabolite('dTDP-D-glucuronate', 'dTDP-D-glucuronate')
b.addMetabolite('dTDPglucose', 'dTDPglucose')
b.addMetabolite('dTMP', 'dTMP')
b.addMetabolite('dUDP', 'dUDP')
b.addMetabolite('dUMP', 'dUMP')
b.addMetabolite('dUTP', 'dUTP')
b.addMetabolite('gamma-L-Glutamyl-L-cysteine', 'gamma-L-Glutamyl-L-cysteine')
b.addMetabolite('meso-26-Diaminoheptanedioate', 'meso-26-Diaminoheptanedioate')
b.addMetabolite('myo-Inositol', 'myo-Inositol')
b.addMetabolite('myo-Inositol4-phosphate', 'myo-Inositol4-phosphate')
b.addMetabolite('myo-Inositolhexakisphosphate', 'myo-Inositolhexakisphosphate')
b.addMetabolite('tRNAAla', 'tRNAAla')
b.addMetabolite('tRNAArg', 'tRNAArg')
b.addMetabolite('tRNAAsn', 'tRNAAsn')
b.addMetabolite('tRNAAsp', 'tRNAAsp')
b.addMetabolite('tRNACys', 'tRNACys')
b.addMetabolite('tRNAGln', 'tRNAGln')
b.addMetabolite('tRNAGlu', 'tRNAGlu')
b.addMetabolite('tRNAGly', 'tRNAGly')
b.addMetabolite('tRNAHis', 'tRNAHis')
b.addMetabolite('tRNAIle', 'tRNAIle')
b.addMetabolite('tRNALeu', 'tRNALeu')
b.addMetabolite('tRNALys', 'tRNALys')
b.addMetabolite('tRNAMet', 'tRNAMet')
b.addMetabolite('tRNAPhe', 'tRNAPhe')
b.addMetabolite('tRNAPro', 'tRNAPro')
b.addMetabolite('tRNASer', 'tRNASer')
b.addMetabolite('tRNAThr', 'tRNAThr')
b.addMetabolite('tRNATrp', 'tRNATrp')
b.addMetabolite('tRNATyr', 'tRNATyr')
b.addMetabolite('tRNAVal', 'tRNAVal')
b.addMetabolite('trans-Dec-2-enoyl-acp', 'trans-Dec-2-enoyl-acp')
b.addMetabolite('trans-Dodec-2-enoyl-acp', 'trans-Dodec-2-enoyl-acp')
b.addMetabolite('trans-Hex-2-enoyl-acp', 'trans-Hex-2-enoyl-acp')
b.addMetabolite('trans-Hexadec-2-enoyl-acp', 'trans-Hexadec-2-enoyl-acp')
b.addMetabolite('trans-Oct-2-enoyl-acp', 'trans-Oct-2-enoyl-acp')
b.addMetabolite('trans-Tetradec-2-enoyl-acp', 'trans-Tetradec-2-enoyl-acp')
b.writeAndClear()

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