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Revision 1.8 - (view) (download) (annotate) - [select for diffs]
Thu Nov 4 02:19:58 2004 UTC (15 years ago) by efrank
Branch: MAIN
CVS Tags: HEAD, post-st-migration, post-st-migration2, sc04-finalDay, sc2004-3, sc2004-4
Changes since 1.7: +6 -6 lines
Diff to previous 1.7
cleanAGEntry:		removes stale state from sharedApp

DDL related: 		increased size of varchars for names of chemistry stuff
			to handle big fat seed stuff

SeedDataFactory		turn off mapping of assignments to chemistry.

KahCatAGCfgMgr		remmoveKey() to support cleanAGEntry

StringReaction:		allow multiple : in strings being parsed to handle
			junk from seed with lots of colons.  ONly the final
			is treated as deliminting the end of the enzyme name

ModelEditor		signal handling, but commentd back out.

RXpanel			duh

Revision 1.7 - (view) (download) (annotate) - [select for diffs]
Tue Oct 5 19:37:35 2004 UTC (15 years, 1 month ago) by efrank
Branch: MAIN
CVS Tags: sc2004-0, sc2004-1, sc2004-2
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
change stoichiometry to floats rathe than ints to accomodate
flux analysis

Revision 1.6 - (view) (download) (annotate) - [select for diffs]
Tue Jul 13 21:15:07 2004 UTC (15 years, 4 months ago) by efrank
Branch: MAIN
CVS Tags: forRick-14Jul04-0, forRick-14Jul04-1, mass-spec-01, mass-spec-02
Changes since 1.5: +1 -1 lines
Diff to previous 1.5
	o change size of Function column from 64 to 128.
	  More reasonable size and avoids a crash.
	o RebuldDb...runs all the steps of rebuilding the database.
	o biuldNewBssCatalog:  go to new BssFactory ctor

	o remove setFoundryId from DataFactoryBase.  Now expect that info
	  to be in the DB itself and for ctor of derivative to set it.

	o Migrate to new DbManager from DBconnect.  Includes moving to
	  new nextSeqVal().
	o Now get fid from database
	o Changed to follow mods above.

Revision 1.5 - (view) (download) (annotate) - [select for diffs]
Wed May 5 23:22:39 2004 UTC (15 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.4: +8 -6 lines
Diff to previous 1.4
	remove uniqueness constraint (Rxid, MetabShortName) from RxInputs
	and RxOutputs.  Some KEGG/Seed reactions do X + X rather than 2X.

	Get the writing to work for real.  You can now read from Seed in
	ModelEditor and write to Bss.  The Reaction_py parser now requires
	the + in a reaction to have spaces around it and changes all '
 	in a reaction to '' to escape them for writing to oracle.

	changed doCommit to commit in various placess.  affects name of named arg

	match name change for docommit to commit

	didn't think i changed it.  hmmmm

Revision 1.4 - (view) (download) (annotate) - [select for diffs]
Thu Jul 31 02:59:25 2003 UTC (16 years, 3 months ago) by efrank
Branch: MAIN
Changes since 1.3: +3 -3 lines
Diff to previous 1.3
	modify lenght of short name to 128chars
	modify so that metabolites names can have '-' in them.  really this has to
        do with a hack of looking for "-" as meaning the reaction arrow.  now  look
        for "<->"  "<-" and "->" explicitly

Revision 1.3 - (view) (download) (annotate) - [select for diffs]
Sun May 18 00:12:16 2003 UTC (16 years, 6 months ago) by efrank
Branch: MAIN
CVS Tags: ldrd-2003-01
Changes since 1.2: +1 -2 lines
Diff to previous 1.2
	remove a constraint

	too much for words. :-)

Revision 1.2 - (view) (download) (annotate) - [select for diffs]
Fri May 9 17:52:54 2003 UTC (16 years, 6 months ago) by efrank
Branch: MAIN
Changes since 1.1: +15 -5 lines
Diff to previous 1.1
   two classes, bss and Reaction_py.
   bss() represents the biosimscratch schema and has methods to load
	data into it.  the methods are guesses at basic operations
	on the database for building models and will stand behind
	a gui at some point.
   Reaction_py: a class that holds info for a reacction.  its got this
	name to distinguish it from RecoReadout/Reaction.hh.  they
        should probably be meged but that takes a language mix.  this
	one knows how to parse a simple ascii rep of a reaction

Revision - (view) (download) (annotate) - [select for diffs] (vendor branch)
Fri Dec 20 20:16:23 2002 UTC (16 years, 10 months ago) by efrank
Branch: local
CVS Tags: baseline
Changes since 1.1: +0 -0 lines
Diff to previous 1.1 , to next main 1.8

Import baseline version

Revision 1.1 - (view) (download) (annotate) - [select for diffs]
Fri Dec 20 20:16:23 2002 UTC (16 years, 10 months ago) by efrank
Branch: MAIN
Branch point for: local
Initial revision

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