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Revision 1.8 - (download) (annotate)
Thu Mar 3 17:17:31 2011 UTC (9 years, 3 months ago) by tharriso
Branch: MAIN
CVS Tags: mgrast_dev_03052011, mgrast_dev_04082011, mgrast_release_3_0, mgrast_dev_03252011, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_dev_04052011
Changes since 1.7: +1 -1 lines
fixed braoken search and sequence retrieval, added exact or regex search

RefSeq	NCBI	Release 43	NCBI Reference Sequences Database	National Center for Biotechnology Information	protein	http://www.ncbi.nlm.nih.gov
GenBank	NCBI		NIH Genetic Sequence Database	National Center for Biotechnology Information	protein	http://www.ncbi.nlm.nih.gov
KEGG	KEGG	Release 56	Kyoto Encyclopedia of Genes and Genomes		protein	http://www.genome.jp/kegg
SwissProt	UniProt	Release 2010_10	Swiss-Prot UniProt Knowledgebase	UniProt Knowledgebase	protein	http://www.uniprot.org
TrEMBL	UniProt	Release 2010_10	TrEMBL UniProt Knowledgebase	UniProt Knowledgebase	protein	http://www.uniprot.org
IMG	JGI	3.3	Integrated Microbial Genomes at the Joint Genome Institute	Joint Genome Institute	protein	http://img.jgi.doe.gov
SEED	SEED		The SEED Project		protein	http://www.theseed.org
PATRIC	VBI	August 2010	Pathosystems Resource Integration Center	Virginia Bioinformatics Institute	protein	http://patric.vbi.vt.edu
eggNOG	eggNOG	2.0	evolutionary genealogy of genes: Non-supervised Orthologous Groups		protein	http://eggnog.embl.de
GO	GO		Gene Ontology	Gene Ontology	ontology	http://www.geneontology.org
KO	KEGG	Release 56	KEGG Orthology	Kyoto Encyclopedia of Genes and Genomes	ontology	http://www.genome.jp/kegg
Subsystems	SEED		SEED Subsystems Annotation	The SEED Project	ontology	http://www.theseed.org
COG	eggNOG	2.0	eggNOG: Clusters of Orthologous Groups	evolutionary genealogy of genes: Non-supervised Orthologous Groups	ontology	http://eggnog.embl.de
NOG	eggNOG	2.0	eggNOG: Non-supervised Orthologous Groups	evolutionary genealogy of genes: Non-supervised Orthologous Groups	ontology	http://eggnog.embl.de
RDP	RDP	10.22	Ribosomal Database Project		rna	http://rdp.cme.msu.edu
Greengenes	Greengenes		16S rRNA Gene Database		rna	http://greengenes.lbl.gov
SSU	SILVA	Release 104	SILVA Small Subunit rRNA Database	SILVA rRNA Database Project	rna	http://www.arb-silva.de
LSU	SILVA	Release 104	SILVA Large Subunit rRNA Database	SILVA rRNA database project	rna	http://www.arb-silva.de

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