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Revision 1.6 - (download) (annotate)
Thu Mar 3 17:17:31 2011 UTC (9 years, 3 months ago) by tharriso
Branch: MAIN
CVS Tags: mgrast_dev_03052011, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_dev_06072011, mgrast_release_3_0, mgrast_dev_03252011, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_dev_04052011
Changes since 1.5: +1 -0 lines
fixed braoken search and sequence retrieval, added exact or regex search

NCBI	ftp://ftp.ncbi.nih.gov/refseq/release/complete/	*.genomic.gbff.gz	2011-2-22
NCBI	ftp://ftp.ncbi.nih.gov/blast/db/FASTA/ nr.gz	2011-2-22
KEGG	ftp://ftp.genome.jp//pub/kegg/genes/	genome	2011-2-22
KEGG	ftp://ftp.genome.jp/pub/kegg/release/current/	genes.tar.gz	2011-2-22
KEGG	ftp://ftp.genome.jp/pub/kegg/brite/ko/	*.keg	2011-2-22
UniProt	ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/	uniprot_sprot.dat.gz	2011-2-22
UniProt	ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/	uniprot_trembl.dat.gz	2011-2-22
SEED	ftp://ftp.theseed.org/AnnotationClearingHouse/	md52id2func.gz	2011-2-22
SEED	ftp://ftp.theseed.org/subsystems/	subsystems2role.gz	2011-2-22
VBI	http://brcdownloads.vbi.vt.edu/patric2/genomes/	*.PATRIC.gbf	2011-2-22
JGI	ftp://ftp.jgi-psf.org/pub/IMG/img_w_v330	*.tar.gz	2011-2-22
eggNOG	http://eggnog.embl.de/download/	protein.sequences.v2.fa.gz	2011-2-22
eggNOG	http://eggnog.embl.de/download/	COG.mapping.txt.gz	2011-2-22
eggNOG	http://eggnog.embl.de/download/	NOG.mapping.txt.gz	2011-2-22
GO	ftp://ftp.geneontology.org/pub/go/ontology/obo_format_1_2/	gene_ontology.1_2.obo	2011-2-22
RDP	http://rdp.cme.msu.edu/download/	release10_22_unaligned.gb.gz	2011-2-22
Greengenes	http://greengenes.lbl.gov/Download/Sequence_Data/Fasta_data_files/	current_GREENGENES_unaligned.fasta.gz	2011-2-22
Greengenes	http://greengenes.lbl.gov/Download/Sequence_Data/Greengenes_format/	greengenes16SrRNAgenes.txt.gz	2011-2-22
SILVA	http://www.arb-silva.de/no_cache/download/archive/release_104/Exports/	lsu-parc.fasta.tgz	2011-2-22
SILVA	http://www.arb-silva.de/no_cache/download/archive/release_104/Exports/	lsu-parc.rast	2011-2-22
SILVA	http://www.arb-silva.de/no_cache/download/archive/release_104/Exports/	ssu-parc.fasta.tgz	2011-2-22
SILVA	http://www.arb-silva.de/no_cache/download/archive/release_104/Exports/	ssu-parc.rast	2011-2-22

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